Non-Coding RNA Search

Ss1.1-Pig4-TMW8067B09.3

Sequence:


               
               TTTTCCTTTTCTGTTTGGGTGAAAGTGGTTCTAGAACCTGCACTGAATAGTAGTAAAGCA
ATAAGGCCCAATTCATCCCACAGCACTGATCATCTTTTAATGTCCCACCCTAAGCGAACG
GTAAGAAGGCCTCACTTCAGAAGGGGAGACAGATGGCCCTTAACTACTCAATGACAGAGG
CAGTTACTGTGAGAGACTTCTAGGAATCTTTCTTCTCATAGCGAGTCAAAGCTCTCTGAA
TGTACTGTGTGATGATACATCATGCATGAACCTTTGGTCAGGGATGTCATTGGTGAAGTG
ATTTCAAAAAGTATTCAAAATTTGATATGCTGTTTAGTCACTACAGTGCCCTCAAAGGGC
AGAAGTTGCAGCCTTTTTTATATTGCCTGCCAAAATTTGAAGTATTAGAAGTGTGCCATG
AGAGAAAAACTTAACAAGGAATTTTGAAAAGTAATGCAAAGAACAGAACTGCAACACTAT
TTTTAAAATAATAAATATCTGAGTTAAAATTACTGAACCTTTATTTTACACCTCCTTTAA
AAAATATACGAGAACAAGGTACATGCATTATGTGTCACATTACTGGGCAAACTGTTCAAA
TATTTTTTTTAAACCTCCCTGTATAGAAAAAAATCATTAAGGATGTAAAAGCCATGCTTG
CCTATTTGCTGTATACATGTAATGAAATTGTAGATAAAGTGTAGTGCATTGAAACAAATG
AACAAAAAGTAGATACTTTTACTATACAAGGGTGCTGGTGCAGAAAAAATATATATATTT
TTGGAAATGTAGCATTTTATACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTCCTTTTCTGTTTGGGTGAAAGTGGTTCTAGAACCTGCACTGAATAGTAGTAAAGCA
ATAAGGCCCAATTCATCCCACAGCACTGATCATCTTTTAATGTCCCACCCTAAGCGAACG
GTAAGAAGGCCTCACTTCAGAAGGGGAGACAGATGGCCCTTAACTACTCAATGACAGAGG
CAGTTACTGTGAGAGACTTCTAGGAATCTTTCTTCTCATAGCGAGTCAAAGCTCTCTGAA
TGTACTGTGTGATGATACATCATGCATGAACCTTTGGTCAGGGATGTCATTGGTGAAGTG
ATTTCAAAAAGTATTCAAAATTTGATATGCTGTTTAGTCACTACAGTGCCCTCAAAGGGC
AGAAGTTGCAGCCTTTTTTATATTGCCTGCCAAAATTTGAAGTATTAGAAGTGTGCCATG
AGAGAAAAACTTAACAAGGAATTTTGAAAAGTAATGCAAAGAACAGAACTGCAACACTAT
TTTTAAAATAATAAATATCTGAGTTAAAATTACTGAACCTTTATTTTACACCTCCTTTAA
AAAATATACGAGAACAAGGTACATGCATTATGTGTCACATTACTGGGCAAACTGTTCAAA
TATTTTTTTTAAACCTCCCTGTATAGAAAAAAATCATTAAGGATGTAAAAGCCATGCTTG
CCTATTTGCTGTATACATGTAATGAAATTGTAGATAAAGTGTAGTGCATTGAAACAAATG
AACAAAAAGTAGATACTTTTACTATACAAGGGTGCTGGTGCAGAAAAAATATATATATTT
TTGGAAATGTAGCATTTTATACTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               237-350, + strand, RNAz p=0.829658

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               237-350, + strand, RNAz p=0.829658

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC019917, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC019917, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-804, gnl|bosTau2|chr9 (61798405-61797602)
               

               
               1-804, gnl|Hg17|chr6 (163962346-163963151)
               

               
               1-804, gnl|Mm7|chr17 (8928156-8927342)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-804, gnl|bosTau2|chr9 (61798405-61797602)
               

               
               1-804, gnl|Hg17|chr6 (163962346-163963151)
               

               
               1-804, gnl|Mm7|chr17 (8928156-8927342)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               sme (0.610874)
               

               
               isp (0.300752)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               sin (0.174948)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.610874)
               

               
               isp (0.300752)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               sin (0.174948)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	1-804, gnl\|bosTau2\|chr9 (61798405-61797602)
	1-804, gnl\|Hg17\|chr6 (163962346-163963151)
	1-804, gnl\|Mm7\|chr17 (8928156-8927342)

	sme (0.610874)
	isp (0.300752)
	ret (0.257467)
	mgp (0.230681)
	sin (0.174948)
	cst (0.140036)
	ste (0.135208)
	kid (0.129735)
	ova (0.129132)
	thg (0.126791)
	ese (0.126502)
	tra (0.123092)
	spc (0.113366)
	ldo (0.0970026)