Non-Coding RNA Search

Ss1.1-Pig4-TMW8067B19.3

Sequence:


               
               CCCTCCTCCTTGGCCAGTCCCACAATTTATTCCTGAAAATTAGAAAGAACTTAATAGGAT
CAGGATGAAGTTTTTTTTCAAATAATTAAGGCTGTTTGAAACCCCTTCCTTGGGCAAGGA
CTTGCCCACTTCAGCCCCTGTGCTGGAGCCCCAGCCTGACTGTTACTTGATTCAGTGTGT
GTCAGACACCTACAGCATCTATGTCTTTTTCAAGGGAATTTGTCAAATAATGGTGTTGAG
CTAATTGTTGCAAGCAATTGCATATTGACAGCTGTGATTTTTTTGGATAGCAAATATTAT
GGCCAAAGCCAGTTTCTTGGCATTTCAAAAATAATGCAATAAAACCTAGTCGAGGTTAGC
TGAGACTGGAAATGGAAATGCCTTTTCTCATGGTAAAATGATTCATTTCTGGGTTTGTTT
TTTTTTTTGTTTGTTTATTTAGTTTTTTGGGTTTTTTTGTTTTGTTTTGTTTTGTTTTTC
ATCCTGGATTCATTCCCTGATCTTGTATCAAGAGATCAGATCAATGAAATATGAACTAGA
GTATTTTTCTTAAGCCTATTGAGTGATTTATTTTTTAAAAATGTTTAAACGTGTATGCTT
TTCTTTCAGCACATACAACAGCAAAACTTTTGTATTAACGAACTTACCTTTGCATGTATA
GAGAACTGAAAATCATTTATTTCCCTAACTTATTCCTCTTTCAAATAACAGATGGCAGAT
CTGAATCCGAAATTCTTTGTTGTATCTGCACAGTCCACATTCTTTACTGTGTCCTACGAC
TGTATCTTGGCTCTCTGCTGTATTAAATACCATCCTAAGAACTTGTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTCCTCCTTGGCCAGTCCCACAATTTATTCCTGAAAATTAGAAAGAACTTAATAGGAT
CAGGATGAAGTTTTTTTTCAAATAATTAAGGCTGTTTGAAACCCCTTCCTTGGGCAAGGA
CTTGCCCACTTCAGCCCCTGTGCTGGAGCCCCAGCCTGACTGTTACTTGATTCAGTGTGT
GTCAGACACCTACAGCATCTATGTCTTTTTCAAGGGAATTTGTCAAATAATGGTGTTGAG
CTAATTGTTGCAAGCAATTGCATATTGACAGCTGTGATTTTTTTGGATAGCAAATATTAT
GGCCAAAGCCAGTTTCTTGGCATTTCAAAAATAATGCAATAAAACCTAGTCGAGGTTAGC
TGAGACTGGAAATGGAAATGCCTTTTCTCATGGTAAAATGATTCATTTCTGGGTTTGTTT
TTTTTTTTGTTTGTTTATTTAGTTTTTTGGGTTTTTTTGTTTTGTTTTGTTTTGTTTTTC
ATCCTGGATTCATTCCCTGATCTTGTATCAAGAGATCAGATCAATGAAATATGAACTAGA
GTATTTTTCTTAAGCCTATTGAGTGATTTATTTTTTAAAAATGTTTAAACGTGTATGCTT
TTCTTTCAGCACATACAACAGCAAAACTTTTGTATTAACGAACTTACCTTTGCATGTATA
GAGAACTGAAAATCATTTATTTCCCTAACTTATTCCTCTTTCAAATAACAGATGGCAGAT
CTGAATCCGAAATTCTTTGTTGTATCTGCACAGTCCACATTCTTTACTGTGTCCTACGAC
TGTATCTTGGCTCTCTGCTGTATTAAATACCATCCTAAGAACTTGTTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               258-377, + strand, RNAz p=0.61262

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               258-377, + strand, RNAz p=0.61262

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-428, gnl|bosTau2|chr11 (62092806-62092378)
               

               
               3-428, gnl|Hg17|chr2 (14727147-14727601)
               

               
               3-428, gnl|Mm7|chr12 (14207321-14206879)
               


               
               463-828, gnl|bosTau2|chr11 (62092395-62092034)
               

               
               463-828, gnl|Hg17|chr2 (14727584-14727950)
               

               
               463-828, gnl|Mm7|chr12 (14206923-14206542)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-428, gnl|bosTau2|chr11 (62092806-62092378)
               

               
               3-428, gnl|Hg17|chr2 (14727147-14727601)
               

               
               3-428, gnl|Mm7|chr12 (14207321-14206879)
               


               
               463-828, gnl|bosTau2|chr11 (62092395-62092034)
               

               
               463-828, gnl|Hg17|chr2 (14727584-14727950)
               

               
               463-828, gnl|Mm7|chr12 (14206923-14206542)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               rec (0.519211)
               

               
               fco (0.471624)
               

               
               ret (0.3862)
               

               
               mgp (0.230681)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               cje (0.165235)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               kid (0.129735)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.519211)
               

               
               fco (0.471624)
               

               
               ret (0.3862)
               

               
               mgp (0.230681)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               cje (0.165235)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               kid (0.129735)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)

	3-428, gnl\|bosTau2\|chr11 (62092806-62092378)
	3-428, gnl\|Hg17\|chr2 (14727147-14727601)
	3-428, gnl\|Mm7\|chr12 (14207321-14206879)

	463-828, gnl\|bosTau2\|chr11 (62092395-62092034)
	463-828, gnl\|Hg17\|chr2 (14727584-14727950)
	463-828, gnl\|Mm7\|chr12 (14206923-14206542)

	rec (0.519211)
	fco (0.471624)
	ret (0.3862)
	mgp (0.230681)
	fcc (0.197785)
	col (0.195008)
	cje (0.165235)
	ski (0.146735)
	hyp (0.142837)
	kid (0.129735)
	eep (0.122564)
	ebs (0.118301)