Ss1.1-Pig4-TMW8067B20.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCGGATGGCAAGATGGCGGCCTCCGCTTTTGCCGGTGCTGTGAGAGCAGCCACAGGAATC TTACGGCCGCTGCATATTTTGGCATCTTCAGCCTATCAAAACTGTGCCAAGAATGCCTGT CTTAGTTCTGTACTGTCCTCCCGACATTTCAGTCATATTCAGACATCGGCTTTGTTGTCT GCCCCCAGACTTATCACATCTGTCAGAAACCTCATGTGTGGACCTACTGCACCAGTCCTC AACAGAGTGGCCCCCTTGCTCCCACATGTCCTGAAGCCACCAGTCAGAACCGTAACATAC TTCAGTTCACGAAAGGGCAAGAGGAAGACTGTGAAAGCTGTCATCTACAGGTTCCTTCGA CTTCATTCTGGCCTGTGGCTAAGGAGGAAGGCTGGTTATAAGAAAAAATTATGGAAGAAG ACGGCTGCACGAAAAAGACGCTTAAGGGAATTTGTCTTCTGCAATAAAACCCAGAGTAAG CTCTTAGATAAAATGACAACGTCTTTCTGGAAGAGGCGAAACTGGTATGCTGATGATCCT TATCAGAAGTATCAAGATCGAACAAACCTGAAAGTATAGATGAGAAGTTTGATGACTTCC CACCCAGTTACTGAATCTTCATGTATACGTCTTTGCCAAGATGATATAGTATAAAACATG ATGTAAACTGTCCCATCGGATATGGAAATACACAGTACCAACATTACAACATTAAATTTA TCAAAGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCGGATGGCAAGATGGCGGCCTCCGCTTTTGCCGGTGCTGTGAGAGCAGCCACAGGAATC TTACGGCCGCTGCATATTTTGGCATCTTCAGCCTATCAAAACTGTGCCAAGAATGCCTGT CTTAGTTCTGTACTGTCCTCCCGACATTTCAGTCATATTCAGACATCGGCTTTGTTGTCT GCCCCCAGACTTATCACATCTGTCAGAAACCTCATGTGTGGACCTACTGCACCAGTCCTC AACAGAGTGGCCCCCTTGCTCCCACATGTCCTGAAGCCACCAGTCAGAACCGTAACATAC TTCAGTTCACGAAAGGGCAAGAGGAAGACTGTGAAAGCTGTCATCTACAGGTTCCTTCGA CTTCATTCTGGCCTGTGGCTAAGGAGGAAGGCTGGTTATAAGAAAAAATTATGGAAGAAG ACGGCTGCACGAAAAAGACGCTTAAGGGAATTTGTCTTCTGCAATAAAACCCAGAGTAAG CTCTTAGATAAAATGACAACGTCTTTCTGGAAGAGGCGAAACTGGTATGCTGATGATCCT TATCAGAAGTATCAAGATCGAACAAACCTGAAAGTATAGATGAGAAGTTTGATGACTTCC CACCCAGTTACTGAATCTTCATGTATACGTCTTTGCCAAGATGATATAGTATAAAACATG ATGTAAACTGTCCCATCGGATATGGAAATACACAGTACCAACATTACAACATTAAATTTA TCAAAGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 53-245, gnl|bosTau2|chr11 (36519919-36519727) | |
| 53-245, gnl|canFam2|chr17 (41982519-41982313) | |
| 53-245, gnl|canFam2|chr17 (41982509-41982356) | |
| 53-245, gnl|dasNov1|scaffold_8947 (76484-76697) | |
| 53-245, gnl|dasNov1|scaffold_8947 (76492-76654) | |
| 53-245, gnl|echTel1|scaffold_279133 (53306-53147) | |
| 53-245, gnl|echTel1|scaffold_323782 (1485-1689) | |
| 53-245, gnl|hg17|chr2 (86344878-86345091) | |
| 53-245, gnl|Hg17|chr2 (86344884-86345076) | |
| 53-245, gnl|hg17|chr6 (14057347-14057511) | |
| 53-245, gnl|loxAfr1|scaffold_83495 (9583-9790) | |
| 53-245, gnl|loxAfr1|scaffold_83495 (9595-9757) | |
| 53-245, gnl|mm7|chr18 (57496425-57496263) | |
| 53-245, gnl|mm7|chr6 (71836804-71836590) | |
| 53-245, gnl|Mm7|chr6 (71836792-71836600) | |
| 53-245, gnl|monDom2|scaffold_63 (428078-428291) | |
| 53-245, gnl|monDom2|scaffold_71 (1175995-1176157) | |
| 53-245, gnl|oryCun1|scaffold_185076 (52752-52551) | |
| 53-245, gnl|oryCun1|scaffold_212164 (195014-194852) | |
| 53-245, gnl|panTro1|chr12_random (30369756-30369543) | |
| 53-245, gnl|panTro1|chr5 (14350335-14350495) | |
| 53-245, gnl|rheMac2|chr4 (13908067-13908229) | |
| 53-245, gnl|rheMac2|chr9 (62475522-62475335) | |
| 53-245, gnl|rn3|chr4 (105351540-105351321) | |
| 53-245, gnl|rn3|chr4 (105351528-105351366) | |
| 389-725, gnl|bosTau2|chr11 (36515799-36515457) | |
| 389-725, gnl|canFam2|chr17 (41977936-41978153) | |
| 389-725, gnl|canFam2|chr17 (41977936-41978153) | |
| 389-725, gnl|danRer3|chrNA (216263713-216263934) | |
| 389-725, gnl|danRer3|chrNA (216263713-216263919) | |
| 389-725, gnl|dasNov1|scaffold_8947 (80268-80051) | |
| 389-725, gnl|dasNov1|scaffold_8947 (80268-80051) | |
| 389-725, gnl|echTel1|scaffold_279133 (52757-52973) | |
| 389-725, gnl|echTel1|scaffold_279133 (52757-52973) | |
| 389-725, gnl|fr1|chrUn (69861876-69861616) | |
| 389-725, gnl|fr1|chrUn (69861876-69861686) | |
| 389-725, gnl|galGal2|chr4 (85573199-85572986) | |
| 389-725, gnl|galGal2|chr4 (85573212-85572986) | |
| 389-725, gnl|hg17|chr10 (65063994-65064214) | |
| 389-725, gnl|Hg17|chr2 (86349259-86349598) | |
| 389-725, gnl|hg17|chrX (12622611-12622829) | |
| 389-725, gnl|loxAfr1|scaffold_20944 (17061-16840) | |
| 389-725, gnl|loxAfr1|scaffold_20944 (17061-16861) | |
| 389-725, gnl|mm7|chr18 (57495873-57496090) | |
| 389-725, gnl|mm7|chr18 (57495873-57496090) | |
| 389-725, gnl|Mm7|chr6 (71834220-71833905) | |
| 389-725, gnl|monDom2|scaffold_71 (1176576-1176331) | |
| 389-725, gnl|monDom2|scaffold_71 (1176576-1176331) | |
| 389-725, gnl|oryCun1|scaffold_212164 (194477-194680) | |
| 389-725, gnl|oryCun1|scaffold_212164 (194477-194680) | |
| 389-725, gnl|panTro1|chr8 (66041555-66041774) | |
| 389-725, gnl|panTro1|chrX (13035658-13035876) | |
| 389-725, gnl|rheMac2|chr9 (73623659-73623448) | |
| 389-725, gnl|rheMac2|chrX (10550822-10551041) | |
| 389-725, gnl|rn3|chr18 (52933847-52934057) | |
| 389-725, gnl|rn3|chr4 (105348797-105349014) | |
| 389-725, gnl|tetNig1|chr10 (5449487-5449774) | |
| 389-725, gnl|tetNig1|chr10 (5449487-5449705) | |
| 389-725, gnl|xenTro1|scaffold_149 (1189050-1189266) | |
| 389-725, gnl|xenTro1|scaffold_149 (1189050-1189266) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 53-245, gnl|bosTau2|chr11 (36519919-36519727) | |
| 53-245, gnl|canFam2|chr17 (41982519-41982313) | |
| 53-245, gnl|canFam2|chr17 (41982509-41982356) | |
| 53-245, gnl|dasNov1|scaffold_8947 (76484-76697) | |
| 53-245, gnl|dasNov1|scaffold_8947 (76492-76654) | |
| 53-245, gnl|echTel1|scaffold_279133 (53306-53147) | |
| 53-245, gnl|echTel1|scaffold_323782 (1485-1689) | |
| 53-245, gnl|hg17|chr2 (86344878-86345091) | |
| 53-245, gnl|Hg17|chr2 (86344884-86345076) | |
| 53-245, gnl|hg17|chr6 (14057347-14057511) | |
| 53-245, gnl|loxAfr1|scaffold_83495 (9583-9790) | |
| 53-245, gnl|loxAfr1|scaffold_83495 (9595-9757) | |
| 53-245, gnl|mm7|chr18 (57496425-57496263) | |
| 53-245, gnl|mm7|chr6 (71836804-71836590) | |
| 53-245, gnl|Mm7|chr6 (71836792-71836600) | |
| 53-245, gnl|monDom2|scaffold_63 (428078-428291) | |
| 53-245, gnl|monDom2|scaffold_71 (1175995-1176157) | |
| 53-245, gnl|oryCun1|scaffold_185076 (52752-52551) | |
| 53-245, gnl|oryCun1|scaffold_212164 (195014-194852) | |
| 53-245, gnl|panTro1|chr12_random (30369756-30369543) | |
| 53-245, gnl|panTro1|chr5 (14350335-14350495) | |
| 53-245, gnl|rheMac2|chr4 (13908067-13908229) | |
| 53-245, gnl|rheMac2|chr9 (62475522-62475335) | |
| 53-245, gnl|rn3|chr4 (105351540-105351321) | |
| 53-245, gnl|rn3|chr4 (105351528-105351366) | |
| 389-725, gnl|bosTau2|chr11 (36515799-36515457) | |
| 389-725, gnl|canFam2|chr17 (41977936-41978153) | |
| 389-725, gnl|canFam2|chr17 (41977936-41978153) | |
| 389-725, gnl|danRer3|chrNA (216263713-216263934) | |
| 389-725, gnl|danRer3|chrNA (216263713-216263919) | |
| 389-725, gnl|dasNov1|scaffold_8947 (80268-80051) | |
| 389-725, gnl|dasNov1|scaffold_8947 (80268-80051) | |
| 389-725, gnl|echTel1|scaffold_279133 (52757-52973) | |
| 389-725, gnl|echTel1|scaffold_279133 (52757-52973) | |
| 389-725, gnl|fr1|chrUn (69861876-69861616) | |
| 389-725, gnl|fr1|chrUn (69861876-69861686) | |
| 389-725, gnl|galGal2|chr4 (85573199-85572986) | |
| 389-725, gnl|galGal2|chr4 (85573212-85572986) | |
| 389-725, gnl|hg17|chr10 (65063994-65064214) | |
| 389-725, gnl|Hg17|chr2 (86349259-86349598) | |
| 389-725, gnl|hg17|chrX (12622611-12622829) | |
| 389-725, gnl|loxAfr1|scaffold_20944 (17061-16840) | |
| 389-725, gnl|loxAfr1|scaffold_20944 (17061-16861) | |
| 389-725, gnl|mm7|chr18 (57495873-57496090) | |
| 389-725, gnl|mm7|chr18 (57495873-57496090) | |
| 389-725, gnl|Mm7|chr6 (71834220-71833905) | |
| 389-725, gnl|monDom2|scaffold_71 (1176576-1176331) | |
| 389-725, gnl|monDom2|scaffold_71 (1176576-1176331) | |
| 389-725, gnl|oryCun1|scaffold_212164 (194477-194680) | |
| 389-725, gnl|oryCun1|scaffold_212164 (194477-194680) | |
| 389-725, gnl|panTro1|chr8 (66041555-66041774) | |
| 389-725, gnl|panTro1|chrX (13035658-13035876) | |
| 389-725, gnl|rheMac2|chr9 (73623659-73623448) | |
| 389-725, gnl|rheMac2|chrX (10550822-10551041) | |
| 389-725, gnl|rn3|chr18 (52933847-52934057) | |
| 389-725, gnl|rn3|chr4 (105348797-105349014) | |
| 389-725, gnl|tetNig1|chr10 (5449487-5449774) | |
| 389-725, gnl|tetNig1|chr10 (5449487-5449705) | |
| 389-725, gnl|xenTro1|scaffold_149 (1189050-1189266) | |
| 389-725, gnl|xenTro1|scaffold_149 (1189050-1189266) |
| Expressed library(ies): 31 entry(ies) | More info |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
| rec (0.519211) | |
| thg (0.507164) | |
| spc (0.453463) | |
| lin (0.436808) | |
| aor (0.390549) | |
| vin (0.332557) | |
| sme (0.305437) | |
| cte (0.29274) | |
| lyg (0.266205) | |
| ova (0.258264) | |
| ret (0.257467) | |
| cbe (0.239234) | |
| pgl (0.236967) | |
| tes (0.207814) | |
| sto (0.179824) | |
| fty (0.17584) | |
| cje (0.165235) | |
| mga (0.160205) | |
| bfe (0.149858) | |
| pty (0.142714) | |
| csk (0.140746) | |
| che (0.136314) | |
| ste (0.135208) | |
| pla (0.133672) | |
| sug (0.127291) | |
| ese (0.126502) | |
| bla (0.124347) | |
| tra (0.123092) | |
| jca (0.11396) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| rec (0.519211) | |
| thg (0.507164) | |
| spc (0.453463) | |
| lin (0.436808) | |
| aor (0.390549) | |
| vin (0.332557) | |
| sme (0.305437) | |
| cte (0.29274) | |
| lyg (0.266205) | |
| ova (0.258264) | |
| ret (0.257467) | |
| cbe (0.239234) | |
| pgl (0.236967) | |
| tes (0.207814) | |
| sto (0.179824) | |
| fty (0.17584) | |
| cje (0.165235) | |
| mga (0.160205) | |
| bfe (0.149858) | |
| pty (0.142714) | |
| csk (0.140746) | |
| che (0.136314) | |
| ste (0.135208) | |
| pla (0.133672) | |
| sug (0.127291) | |
| ese (0.126502) | |
| bla (0.124347) | |
| tra (0.123092) | |
| jca (0.11396) | |
| eje (0.0988338) | |
| ldo (0.0970026) |