Non-Coding RNA Search

Ss1.1-Pig4-TMW8067C22.3

Sequence:


               
               GGGATGGTGAAGGATGGTTTTCAGTCATCTAGGATCCTACCGGAAGGATTATCTGAAGGG
AAAATGGGTCTTTCAGGTGCATGTTCAAAAGGCTTTGATGGACTGAAAGTAACTGTGAGA
GCTGAACCATCAGGAGGGGTGGCCTAAGACTACGATGCTAAAGTATGCATACCTCAGTTA
CAAAACTTTTGAAAGGAAGTCTCAGCCACAGAATGCATATACCTGTAGAGTTTTGCATGG
GTTTTATATGAATACAATTTTAAAAAAATAGCTGCTTGCACATTATACCAGAAAAACCTC
CAAAACTGCAATTGCTTTGAAAATAGATTTTAGGTTTTTTGGAGTTTTCTGAAATGCTTG
GTCTGTATTTTGATAATTGTGCATATTATGTAAAAATGTTGGTGGACCCATAAATGACCA
GACTTTTTCTAAGAAAAATGTTGCTTTAATGCATTTCATGAATTTTTACTCTTATATCAT
TGCTTGCTAGTAATAGCAAATCTGCTTTTCTGCATCTGCTTTGCGTAGCTATTGTAAGGC
TTTGAACTAATGTATGTATTTATTGCTTGAACTTCTGTGCATACCTTATAAAGCATAATG
TCTGACGATTTAAATGGCTCATGTATTCTTGCTTCTATCATAAGCTGATTATGGGGACTA
TGATCTTTTGTATACAGCAAATTTTAACTGTAGCACAAACATCTGTTTATGTATTGGTGG
AATATACCTGTTTTATTTATCTTTTTTGAGGTAAACTAATTTTTGATACTTTTCATTACT
GTGTACTATGTTCATACTTTGAATTCTCTGACGTTAGAAGTCATGGTTGAGAATTGTAAC
AGCTGTTATTCGTTCTGTATTCATGGCTTTCACTGCTGAATAAAATAAAGGACCAAACCT
AGGATTTGAAAGAAAACTGTCTACCTCTAACACCAGGGAGTTATCAGATTTTATTTTACA
TAGTTTTAGTCTACAAAGACACAATTGCTTAAACCTAGTGGGCTTAAGGCTTATATTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGATGGTGAAGGATGGTTTTCAGTCATCTAGGATCCTACCGGAAGGATTATCTGAAGGG
AAAATGGGTCTTTCAGGTGCATGTTCAAAAGGCTTTGATGGACTGAAAGTAACTGTGAGA
GCTGAACCATCAGGAGGGGTGGCCTAAGACTACGATGCTAAAGTATGCATACCTCAGTTA
CAAAACTTTTGAAAGGAAGTCTCAGCCACAGAATGCATATACCTGTAGAGTTTTGCATGG
GTTTTATATGAATACAATTTTAAAAAAATAGCTGCTTGCACATTATACCAGAAAAACCTC
CAAAACTGCAATTGCTTTGAAAATAGATTTTAGGTTTTTTGGAGTTTTCTGAAATGCTTG
GTCTGTATTTTGATAATTGTGCATATTATGTAAAAATGTTGGTGGACCCATAAATGACCA
GACTTTTTCTAAGAAAAATGTTGCTTTAATGCATTTCATGAATTTTTACTCTTATATCAT
TGCTTGCTAGTAATAGCAAATCTGCTTTTCTGCATCTGCTTTGCGTAGCTATTGTAAGGC
TTTGAACTAATGTATGTATTTATTGCTTGAACTTCTGTGCATACCTTATAAAGCATAATG
TCTGACGATTTAAATGGCTCATGTATTCTTGCTTCTATCATAAGCTGATTATGGGGACTA
TGATCTTTTGTATACAGCAAATTTTAACTGTAGCACAAACATCTGTTTATGTATTGGTGG
AATATACCTGTTTTATTTATCTTTTTTGAGGTAAACTAATTTTTGATACTTTTCATTACT
GTGTACTATGTTCATACTTTGAATTCTCTGACGTTAGAAGTCATGGTTGAGAATTGTAAC
AGCTGTTATTCGTTCTGTATTCATGGCTTTCACTGCTGAATAAAATAAAGGACCAAACCT
AGGATTTGAAAGAAAACTGTCTACCTCTAACACCAGGGAGTTATCAGATTTTATTTTACA
TAGTTTTAGTCTACAAAGACACAATTGCTTAAACCTAGTGGGCTTAAGGCTTATATTTCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               479-598, + strand, RNAz p=0.628283

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               479-598, + strand, RNAz p=0.628283

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1017, gnl|bosTau2|chr4 (30719795-30718782)
               

               
               1-1017, gnl|Hg17|chr7 (113926098-113927114)
               

               
               1-1017, gnl|Mm7|chr6 (15382013-15383027)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1017, gnl|bosTau2|chr4 (30719795-30718782)
               

               
               1-1017, gnl|Hg17|chr7 (113926098-113927114)
               

               
               1-1017, gnl|Mm7|chr6 (15382013-15383027)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fhi (0.169578)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

	1-1017, gnl\|bosTau2\|chr4 (30719795-30718782)
	1-1017, gnl\|Hg17\|chr7 (113926098-113927114)
	1-1017, gnl\|Mm7\|chr6 (15382013-15383027)

	fhi (0.169578)
	lun (0.150489)
	ski (0.146735)
	bla (0.124347)
	spc (0.113366)