Non-Coding RNA Search

Ss1.1-Pig4-TMW8067D20.3

Sequence:


               
               GTCTGGTCCTTCGGGGTCGTCCTCTGGGAGATTGCCACGCTGGCCGAGCAGCCATACCAG
GGCTTGTCCAACGAGCAAGTCCTTCGCTTCGTCATGGAGGGCGGCCTTCTGGACAAGCCG
GACAACTGTCCCGACATGCTGTTTGAGCTGATGCGCATGTGCTGGCAGTACAACCCCAAG
ATGAGGCCTTCCTTCCTGGAGATCATCAGCAGCATCAAGGATGAGATGGAGCCTGGCTTC
CGGGAGGTCTCCTTCTACTACAGTGAGGAGAACAAGCCGCCTGAGCCGGAGGAGCTGGAC
CTGGAGCCGGAGAACATGGAGAGCGTCCCCCTGGACCCCTCGGCCTCCTCGTCCTCCCTG
CCGCTGCCCGACAGACACTCAGGACACAAGGCTGAGAACGGCCCAGGCCCTGGCGTGCTG
GTGCTGCGAGCCAGCTTCGACGAGAGACAGCCTTACGCGCACATGAACGGGGGCCGCAAG
AACGAGCGGGCCCTGCCTCTGCCCCAGTCCTCGACCTGCTGATCCTGGATCCCGATCCCG
TGCAAACAGTACCGTGCGCACGCGGGCGGGCGGGGGGAGAGTTTTAACAATCTATTCACA
GCCTCCTGTACCTCAGTGGATCTCCAGAACTGCCATTGCTGCCCACGGGAGACGGCTTCT
CTGCAGTAAACACATTTGGGATGTTCCTTTTTTCAATATGCAAGCAGCTTTTTATTTCCC
AACCCAAACCCTTAACTGACACGGGCCTTTAAGAACCTTAATGACAACACTTAATAGCAA
CAGAACACTTGAGAATCAAGCCTCCTCACCCCCTCCCTGTCCCTCTCTCCTCTTTCTCCC
TCTGTCTCTCACCTTTTTCTTTCTGCTTCTCGATGGAAACGCATTTGCTGCAAGCCCAGC
CGGGACGCCCTTCATGTAGGATTGAGGAAAGAGCTGTCCCTCCAAGGCCCCACCTTGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTGGTCCTTCGGGGTCGTCCTCTGGGAGATTGCCACGCTGGCCGAGCAGCCATACCAG
GGCTTGTCCAACGAGCAAGTCCTTCGCTTCGTCATGGAGGGCGGCCTTCTGGACAAGCCG
GACAACTGTCCCGACATGCTGTTTGAGCTGATGCGCATGTGCTGGCAGTACAACCCCAAG
ATGAGGCCTTCCTTCCTGGAGATCATCAGCAGCATCAAGGATGAGATGGAGCCTGGCTTC
CGGGAGGTCTCCTTCTACTACAGTGAGGAGAACAAGCCGCCTGAGCCGGAGGAGCTGGAC
CTGGAGCCGGAGAACATGGAGAGCGTCCCCCTGGACCCCTCGGCCTCCTCGTCCTCCCTG
CCGCTGCCCGACAGACACTCAGGACACAAGGCTGAGAACGGCCCAGGCCCTGGCGTGCTG
GTGCTGCGAGCCAGCTTCGACGAGAGACAGCCTTACGCGCACATGAACGGGGGCCGCAAG
AACGAGCGGGCCCTGCCTCTGCCCCAGTCCTCGACCTGCTGATCCTGGATCCCGATCCCG
TGCAAACAGTACCGTGCGCACGCGGGCGGGCGGGGGGAGAGTTTTAACAATCTATTCACA
GCCTCCTGTACCTCAGTGGATCTCCAGAACTGCCATTGCTGCCCACGGGAGACGGCTTCT
CTGCAGTAAACACATTTGGGATGTTCCTTTTTTCAATATGCAAGCAGCTTTTTATTTCCC
AACCCAAACCCTTAACTGACACGGGCCTTTAAGAACCTTAATGACAACACTTAATAGCAA
CAGAACACTTGAGAATCAAGCCTCCTCACCCCCTCCCTGTCCCTCTCTCCTCTTTCTCCC
TCTGTCTCTCACCTTTTTCTTTCTGCTTCTCGATGGAAACGCATTTGCTGCAAGCCCAGC
CGGGACGCCCTTCATGTAGGATTGAGGAAAGAGCTGTCCCTCCAAGGCCCCACCTTGCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9TVA2_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9TVA2_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               854-960, - strand, RNAz p=0.745154

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               854-960, - strand, RNAz p=0.745154

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               141-960, gnl|bosTau2|chr21 (1837215-1836405)
               

               
               141-960, gnl|Hg17|chr15 (97317813-97318630)
               

               
               141-960, gnl|Mm7|chr7 (64081999-64082883)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               141-960, gnl|bosTau2|chr21 (1837215-1836405)
               

               
               141-960, gnl|Hg17|chr15 (97317813-97318630)
               

               
               141-960, gnl|Mm7|chr7 (64081999-64082883)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	141-960, gnl\|bosTau2\|chr21 (1837215-1836405)
	141-960, gnl\|Hg17\|chr15 (97317813-97318630)
	141-960, gnl\|Mm7\|chr7 (64081999-64082883)