Non-Coding RNA Search

Ss1.1-Pig4-TMW8067D23.3

Sequence:


               
               ACACGCCAGTTCTACGATGGTGAGGAGTCTTGCTACATCATCGACGCCAAGCTTGAAGGC
AACCTGGGCCGCTACCTCAATCACAGTTGCAGCCCCAACCTGTTTGTCCAGAATGTCTTC
GTGGATACTCATGATCTTCGCTTCCCATGGGTGGCCTTCTTTGCCAGCAAGAGAATTCGA
GCTGGGACAGAACTTACCTGGGACTACAACTATGAGGTGGGCAGTGTGGAAGGCAAGGAG
CTGCTTTGCTGCTGTGGAGCCATCGAATGCAGAGGCCGTCTTCTCTAAAGGACAGCCTTC
TTCCTAACCTTCTGAACTCTTCCTGAATTGCCCTTTCCTCAGGAACTGGGTCTTCCTGAC
TATTGAATTCTAACCCCCCAAGTCTCCAGTCTAGCAACTCTCCCAGCTCCTAATAGATAG
AAATGGGGGTTCTGGATCAGGAGATCCCTTCCAATGTGGTGCTAGCAGGCAGGGGCCCTC
CTCCACCTCCTAAGACACTAGAGGTGGGAGAGGTTACCATTCTAACCTGGGCCTGACATT
CTCCTGTTGCTCATCCCTCCTACCCTACGTTGGTTTGAGTGTTCATGCTTCTAACAGACT
TTATTCCTGGAATGAGGACTGTGTATTTTACAGTCCCTGGTTTGTATTGTTTCTTGGAAG
TCTTTTAACAAGATGATAAAACTAAGATTATAATTTGATTTCTCTCTCTCATCTCTCAAT
TCTGGGTCTTTAGATGAGCGATTATCTCCCCCCATCCTTCCCAGTGGGCAGCTGTCATTA
ATCTTGACCTTTCTCTATTTTTGCTTTTTCTCATTTGCCATGTAAAATTTTAAAAAGAAA
ATGTTACATAACCATGATGAAGGCATGAGGAAGACTACCTTAGTTTATTTAGTTGATCGC
TCTTCTCTCAATTCTTAATAGTCTCAAACACTTGTTGCCATGTTTCACTTAATCTTTAAT
ATATTTTAATTAAAAAAAACCATTAACAGTAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACGCCAGTTCTACGATGGTGAGGAGTCTTGCTACATCATCGACGCCAAGCTTGAAGGC
AACCTGGGCCGCTACCTCAATCACAGTTGCAGCCCCAACCTGTTTGTCCAGAATGTCTTC
GTGGATACTCATGATCTTCGCTTCCCATGGGTGGCCTTCTTTGCCAGCAAGAGAATTCGA
GCTGGGACAGAACTTACCTGGGACTACAACTATGAGGTGGGCAGTGTGGAAGGCAAGGAG
CTGCTTTGCTGCTGTGGAGCCATCGAATGCAGAGGCCGTCTTCTCTAAAGGACAGCCTTC
TTCCTAACCTTCTGAACTCTTCCTGAATTGCCCTTTCCTCAGGAACTGGGTCTTCCTGAC
TATTGAATTCTAACCCCCCAAGTCTCCAGTCTAGCAACTCTCCCAGCTCCTAATAGATAG
AAATGGGGGTTCTGGATCAGGAGATCCCTTCCAATGTGGTGCTAGCAGGCAGGGGCCCTC
CTCCACCTCCTAAGACACTAGAGGTGGGAGAGGTTACCATTCTAACCTGGGCCTGACATT
CTCCTGTTGCTCATCCCTCCTACCCTACGTTGGTTTGAGTGTTCATGCTTCTAACAGACT
TTATTCCTGGAATGAGGACTGTGTATTTTACAGTCCCTGGTTTGTATTGTTTCTTGGAAG
TCTTTTAACAAGATGATAAAACTAAGATTATAATTTGATTTCTCTCTCTCATCTCTCAAT
TCTGGGTCTTTAGATGAGCGATTATCTCCCCCCATCCTTCCCAGTGGGCAGCTGTCATTA
ATCTTGACCTTTCTCTATTTTTGCTTTTTCTCATTTGCCATGTAAAATTTTAAAAAGAAA
ATGTTACATAACCATGATGAAGGCATGAGGAAGACTACCTTAGTTTATTTAGTTGATCGC
TCTTCTCTCAATTCTTAATAGTCTCAAACACTTGTTGCCATGTTTCACTTAATCTTTAAT
ATATTTTAATTAAAAAAAACCATTAACAGTAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|60598518|gb|AAX25808.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|60598518|gb|AAX25808.1|

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               544-999, gnl|bosTau2|chr17 (37443240-37442795)
               

               
               544-999, gnl|Hg17|chr1 (147750154-147750848)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               544-999, gnl|bosTau2|chr17 (37443240-37442795)
               

               
               544-999, gnl|Hg17|chr1 (147750154-147750848)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               sag (0.182715)
               

               
               duo (0.172801)
               

               
               cag (0.151194)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 9 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.182715)
               

               
               duo (0.172801)
               

               
               cag (0.151194)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	544-999, gnl\|bosTau2\|chr17 (37443240-37442795)
	544-999, gnl\|Hg17\|chr1 (147750154-147750848)

	sag (0.182715)
	duo (0.172801)
	cag (0.151194)
	cst (0.140036)
	pla (0.133672)
	lyg (0.133103)
	pgl (0.118483)
	ebs (0.118301)
	ecc (0.115035)