Non-Coding RNA Search

Ss1.1-Pig4-TMW8067E06.3

Sequence:


               
               GGAGAGGAATCAAATGCAGCTGATGGCAGCTGGGAGCCCCCGAGGGTCAACCCACATTTC
CTTGACCTGGTAGAGCTGCTCCTGCCCACCTCTGGAGATTTGACGCCAGCCTCGGCCGGG
CTCCCAGCAACCCCGGTTTTGAAGGAAGAGGTGCTACAACAGCAAAGCCCTCTGAGCCAG
GCCCGGGAGCTGGAGGCTGAGCTCCCAGAGCAAGGCCAGGTGGCCCACGGTACCAATGGC
ATTCATGTCACCGGTGGGTCTGTGACTGTCACCGGCAACATCTACATCTACAATGGGCCG
GTACTGGGGGGAGCACGGGGCCCTGGGGACCCCCCAGCTCCCCCAGAGCCTCCATACCCC
ATCCCTGAAGAGGGTGCCCCTGGCCCTCCCGGCCTCTCTACACCCTATCAGGAGGATGGC
AAAGCTTGGCACCTGGCTGAGACAGAGACACTGGGGTGCCACGCCCTCTAACGGGGGCCA
AGGACCCAATCTGTCACCCACACCTGATGGTGTCTGGGAGAAGCCAGGAGAAAGGAAGCA
TGAGAGCACCTCTGCCCTGAGGCCACCCTACCCTCGTGGGACTGACGGAGGGCCTGGGTG
GGGCCCCAAGAGGGACCCTGAGGGGCCGGGCCTCAGACACCTCTCCAAGAGCAGGGCAGG
CACTGGCTGGGTACAGTGCCCCCACAGGACTCTCACCGCGGCCTAGGCAGGCCTGAGACT
CCACTGCAGACCTCCTGCCCACTGGGGCTGCACCAACTCAGCCTCAGGCATGGACAAGGC
ATGTGACGCCAACTGCTGCCCCCATGGCATCTACACCTAAGCATGGCACAGAAGGGAGCC
GGCCGCGTGGTCACTGCAAGGACATCGCCAGGACCTCTGGTAGATTCGTGGTGCTCATCC
CCAAGCTTCAGAGGCCCTTCGAGGGCACGTGGACTGAGGGAGACCCTACATGAAGATGGA
GTGACATGGAGGACCACCCTCCCTCCCCCCCTAGACTGGAAAGGGAGTCCTTACAACTGG
GGGCTTGGGTGGGGTTCTAGGTATAAGGGAGAGTTTTGGAAGGAGAGGAAAATGGTGAGT
GTATTTATAAACTGTAACCACATGTAAATAAAAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGAGGAATCAAATGCAGCTGATGGCAGCTGGGAGCCCCCGAGGGTCAACCCACATTTC
CTTGACCTGGTAGAGCTGCTCCTGCCCACCTCTGGAGATTTGACGCCAGCCTCGGCCGGG
CTCCCAGCAACCCCGGTTTTGAAGGAAGAGGTGCTACAACAGCAAAGCCCTCTGAGCCAG
GCCCGGGAGCTGGAGGCTGAGCTCCCAGAGCAAGGCCAGGTGGCCCACGGTACCAATGGC
ATTCATGTCACCGGTGGGTCTGTGACTGTCACCGGCAACATCTACATCTACAATGGGCCG
GTACTGGGGGGAGCACGGGGCCCTGGGGACCCCCCAGCTCCCCCAGAGCCTCCATACCCC
ATCCCTGAAGAGGGTGCCCCTGGCCCTCCCGGCCTCTCTACACCCTATCAGGAGGATGGC
AAAGCTTGGCACCTGGCTGAGACAGAGACACTGGGGTGCCACGCCCTCTAACGGGGGCCA
AGGACCCAATCTGTCACCCACACCTGATGGTGTCTGGGAGAAGCCAGGAGAAAGGAAGCA
TGAGAGCACCTCTGCCCTGAGGCCACCCTACCCTCGTGGGACTGACGGAGGGCCTGGGTG
GGGCCCCAAGAGGGACCCTGAGGGGCCGGGCCTCAGACACCTCTCCAAGAGCAGGGCAGG
CACTGGCTGGGTACAGTGCCCCCACAGGACTCTCACCGCGGCCTAGGCAGGCCTGAGACT
CCACTGCAGACCTCCTGCCCACTGGGGCTGCACCAACTCAGCCTCAGGCATGGACAAGGC
ATGTGACGCCAACTGCTGCCCCCATGGCATCTACACCTAAGCATGGCACAGAAGGGAGCC
GGCCGCGTGGTCACTGCAAGGACATCGCCAGGACCTCTGGTAGATTCGTGGTGCTCATCC
CCAAGCTTCAGAGGCCCTTCGAGGGCACGTGGACTGAGGGAGACCCTACATGAAGATGGA
GTGACATGGAGGACCACCCTCCCTCCCCCCCTAGACTGGAAAGGGAGTCCTTACAACTGG
GGGCTTGGGTGGGGTTCTAGGTATAAGGGAGAGTTTTGGAAGGAGAGGAAAATGGTGAGT
GTATTTATAAACTGTAACCACATGTAAATAAAAAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26347551|dbj|BAC37424.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26347551|dbj|BAC37424.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               302-848, - strand, RNAz p=0.983988
               

               
               925-1069, + strand, RNAz p=0.916697

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               302-848, - strand, RNAz p=0.983988
               

               
               925-1069, + strand, RNAz p=0.916697

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_002342, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_002342, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               224-1116, gnl|bosTau2|chr5 (60738128-60737244)
               

               
               224-1116, gnl|Hg17|chr12 (6370080-6370980)
               

               
               224-1116, gnl|Mm7|chr6 (125333781-125332890)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               224-1116, gnl|bosTau2|chr5 (60738128-60737244)
               

               
               224-1116, gnl|Hg17|chr12 (6370080-6370980)
               

               
               224-1116, gnl|Mm7|chr6 (125333781-125332890)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               nmm (0.265604)
               

               
               clu (0.239292)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               cli (0.152812)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               jej (0.0989218)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.265604)
               

               
               clu (0.239292)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               cli (0.152812)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               jej (0.0989218)

	302-848, - strand, RNAz p=0.983988
	925-1069, + strand, RNAz p=0.916697

	224-1116, gnl\|bosTau2\|chr5 (60738128-60737244)
	224-1116, gnl\|Hg17\|chr12 (6370080-6370980)
	224-1116, gnl\|Mm7\|chr6 (125333781-125332890)

	nmm (0.265604)
	clu (0.239292)
	duo (0.172801)
	cut (0.169924)
	cli (0.152812)
	cst (0.140036)
	che (0.136314)
	jej (0.0989218)