Non-Coding RNA Search

Ss1.1-Pig4-TMW8067E15.3

Sequence:


               
               GCTGGAAGTGGCTGGGAAGAGGGGGACTGGGAGGCCCAGCCAGGGCTTAGCAGAGAGCAG
AGTGGTCTGGGTAGCAGGCCCCACCTCAGGCCTGGGATCCAGGCAGTTGTGCTTGCCATT
GTTATAACCCAGGCTGGCCCTCCTCATTGTGTAGAAGAGAAGCCATGAGGAGGCCCTGGG
GGTGACTCCCTTGAGCTCAGTTGGCTGGCTAATGCAAAACCAAGGTTAGACACCCGACCC
GCTACTCCTTGCACACTTTCGTCCCTGAGTTAGGGAGATGGAGTCCACTGTATACATTCT
TCTCTTGGCTGCATGACTTCCACAGCCACCAAGTCATAAAAAGAGGCTTGATTCGCAGTT
TAGCTGCGTCCCGTTTGCTGCCTCTCAAAAACCTGCCCCTTCACTGAGTACCAACAGTGT
GGTTCAGGCGCCACCTATATCAGAATCATCTGGAGTGGGACACCCCCGGTTCTTCTGACT
CAGAAGGTGATTCAGTCACTAAAGTTTAAAAAGTACTCCTGTGGTGATGAGACTGTTTTA
TCCATGACTTCTTGCCTAGTTTCTTGGGCTTCTCCTTGTGTTTCTTTCCTTTAGGGCATA
ACGTCCGTGCCTCCATCATCTTGGTTGTCTAGTTCTTAGTCCAGTTCAACAAGAAGTGAA
AATCACTAGACATTTCATCAAACTGTGATTTGGCCAAGATAGAAATGGAAGAAGGGGATT
CTCATTCAGGTTTCTCTTGTGGGTCATGACAGAATGATACAGAAGGATCCCTCATTTACC
TGCTGGTATATTTACAGTAAAATTCTGTTGTCAAAGATGATAAAACACTGTGAAGATCTT
CATTTTCGCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGGAAGTGGCTGGGAAGAGGGGGACTGGGAGGCCCAGCCAGGGCTTAGCAGAGAGCAG
AGTGGTCTGGGTAGCAGGCCCCACCTCAGGCCTGGGATCCAGGCAGTTGTGCTTGCCATT
GTTATAACCCAGGCTGGCCCTCCTCATTGTGTAGAAGAGAAGCCATGAGGAGGCCCTGGG
GGTGACTCCCTTGAGCTCAGTTGGCTGGCTAATGCAAAACCAAGGTTAGACACCCGACCC
GCTACTCCTTGCACACTTTCGTCCCTGAGTTAGGGAGATGGAGTCCACTGTATACATTCT
TCTCTTGGCTGCATGACTTCCACAGCCACCAAGTCATAAAAAGAGGCTTGATTCGCAGTT
TAGCTGCGTCCCGTTTGCTGCCTCTCAAAAACCTGCCCCTTCACTGAGTACCAACAGTGT
GGTTCAGGCGCCACCTATATCAGAATCATCTGGAGTGGGACACCCCCGGTTCTTCTGACT
CAGAAGGTGATTCAGTCACTAAAGTTTAAAAAGTACTCCTGTGGTGATGAGACTGTTTTA
TCCATGACTTCTTGCCTAGTTTCTTGGGCTTCTCCTTGTGTTTCTTTCCTTTAGGGCATA
ACGTCCGTGCCTCCATCATCTTGGTTGTCTAGTTCTTAGTCCAGTTCAACAAGAAGTGAA
AATCACTAGACATTTCATCAAACTGTGATTTGGCCAAGATAGAAATGGAAGAAGGGGATT
CTCATTCAGGTTTCTCTTGTGGGTCATGACAGAATGATACAGAAGGATCCCTCATTTACC
TGCTGGTATATTTACAGTAAAATTCTGTTGTCAAAGATGATAAAACACTGTGAAGATCTT
CATTTTCGCCCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               126-240, - strand, RNAz p=0.55235

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               126-240, - strand, RNAz p=0.55235

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               10-354, gnl|bosTau2|chr14 (27235030-27235364)
               

               
               10-354, gnl|Hg17|chr8 (119424607-119424301)
               

               
               10-354, gnl|Mm7|chr15 (53674180-53673874)
               


               
               463-847, gnl|bosTau2|chr14 (27236104-27236499)
               

               
               463-847, gnl|canFam2|chr13 (20688566-20688959)
               

               
               463-847, gnl|dasNov1|scaffold_281 (30881-31293)
               

               
               463-847, gnl|echTel1|scaffold_301613 (10374-9980)
               

               
               463-847, gnl|hg17|chr8 (119423720-119424127)
               

               
               463-847, gnl|Hg17|chr8 (119424166-119423775)
               

               
               463-847, gnl|mm7|chr15 (53672909-53673313)
               

               
               463-847, gnl|Mm7|chr15 (53673352-53672956)
               

               
               463-847, gnl|panTro1|chr7 (122155280-122155687)
               

               
               463-847, gnl|rheMac2|chr8 (120893338-120893748)
               

               
               463-847, gnl|rn3|chr7 (89973898-89974300)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-354, gnl|bosTau2|chr14 (27235030-27235364)
               

               
               10-354, gnl|Hg17|chr8 (119424607-119424301)
               

               
               10-354, gnl|Mm7|chr15 (53674180-53673874)
               


               
               463-847, gnl|bosTau2|chr14 (27236104-27236499)
               

               
               463-847, gnl|canFam2|chr13 (20688566-20688959)
               

               
               463-847, gnl|dasNov1|scaffold_281 (30881-31293)
               

               
               463-847, gnl|echTel1|scaffold_301613 (10374-9980)
               

               
               463-847, gnl|hg17|chr8 (119423720-119424127)
               

               
               463-847, gnl|Hg17|chr8 (119424166-119423775)
               

               
               463-847, gnl|mm7|chr15 (53672909-53673313)
               

               
               463-847, gnl|Mm7|chr15 (53673352-53672956)
               

               
               463-847, gnl|panTro1|chr7 (122155280-122155687)
               

               
               463-847, gnl|rheMac2|chr8 (120893338-120893748)
               

               
               463-847, gnl|rn3|chr7 (89973898-89974300)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mga (0.32041)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.32041)

	10-354, gnl\|bosTau2\|chr14 (27235030-27235364)
	10-354, gnl\|Hg17\|chr8 (119424607-119424301)
	10-354, gnl\|Mm7\|chr15 (53674180-53673874)

	463-847, gnl\|bosTau2\|chr14 (27236104-27236499)
	463-847, gnl\|canFam2\|chr13 (20688566-20688959)
	463-847, gnl\|dasNov1\|scaffold_281 (30881-31293)
	463-847, gnl\|echTel1\|scaffold_301613 (10374-9980)
	463-847, gnl\|hg17\|chr8 (119423720-119424127)
	463-847, gnl\|Hg17\|chr8 (119424166-119423775)
	463-847, gnl\|mm7\|chr15 (53672909-53673313)
	463-847, gnl\|Mm7\|chr15 (53673352-53672956)
	463-847, gnl\|panTro1\|chr7 (122155280-122155687)
	463-847, gnl\|rheMac2\|chr8 (120893338-120893748)
	463-847, gnl\|rn3\|chr7 (89973898-89974300)