Ss1.1-Pig4-TMW8067F20.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATAGCCCACGCGACATCCCGGCGGCAGAGGGCGCAGGCGGCTCGGCTAATCCGGCGGGTC GACTGTCGGGCCGTCCCGCTCGGACCCCGGCCCTAGGTCTGGCCCCGAGATGGGAGCTGC TCCCTGGGGGCTGAGCTTGTCAGCATCCTGGATTGGCCCTCGCCCCTGAAGTCAAGAGAA GAGTCCCTGCGCACCCACACCTCTCTAGCTCCCTTTTGGGGTCGCTTCAGTCTGTCGGGT CTTCAGCCCTAGTGGCTGCGCAGTCCGACAAAGGAGCAGAACGATGATGCTGGCATCGGT GCTGGGGAGTGGTCCCCGGGGGGGGCCACCACTCCGGCCTCTCTTGGGGCCCGCACTCTC GCTCCGGGCCCTCTCCACATCAGCCACCGATACCCACCACGTGGAGATGGCGCGGGAGCG CTCCAAGACCGTCACCTCCTTTTACAACCAGTCGGCCATCGACGCAGCAGCGGAGAAGCC CTCAGTCCGCCTCACTCCGACCATGATGCTCTATTCAGGACGCTCTCAGGATGGCAGCCA CCTGCTGAAAAGTGCTCGGTACTTGCAGCAAGAATTGCCCGTGAGGATTGCTCACCGCAT CAAGGACTTCCGCAGCCTTCCTTTCATCATTGGCTGCAACCCCACTATACTGCACGTGCA CGAACTGTACATCCGTGCCTTCCAGAAGCTGACAGACTTCCCTCCGATCAAGGACCAGGC GGATGAGGCCCAGTACTGCCAGCTGGTGCGACAGCTGTTGGACGACCACAAGGATGTGGT GACCCTCTTGGCTGAGGGCCTGCGTGAGAGCCGGAAGCACATAGAGGACGAGAAGCTGGT CCGCTCCTTCTTAGACAAGACGCTGACTTCGAGGCTCGGGATCCGCATGTTGGCCACACA CCATCTGGCTCTACATGAGGACAAGCCCGACTTTGTTGGCATCATCTGCACTCGCCTCTC ACCAAAGAAGATTATTGAAAAATGGGTGGACTTTGCCAGACGCCTGTGTGAGCACAAGTA TGGCAACGCCCCCCGGGTCCGCATCAACGGCCACGTGGCTGCCCGTTTCCCCTTCATCCC CATGCCGCTGGACTACATCCTGCCCGAGCTGCTCAAGAATGCCATGAGAGCCACGATGGA ATGTCACCTAGACACGCCCTACAACGTCCCGGATGTGGTCATCACCATCGCCAACAACGA TATTGATCTCGTCATCAGGATTTCTGACCGGGGTGGGGGAATTGCTCACAAAGACCTGGA TCGGGTTATGGACTACCACTTCACCACGGCCGAGGCCAGTACCCAGGACCCCCGGATCAG CCCTCTCTTCGGCCACCTAGACATGCACAGTGGCAGCCAGTCAGGACCCATGCACGGCTT TGGCTTCGGGCTGCCCACGTCGCGGGCTTATGCAGAATACCTCGGTGGTTCCCTTCGGCT GCAGTCCCTGCAGGGCATCGGCACGGATGTCTACCTGCGGCTTCGGCACATCGATGGCCG GGAGGAAAGCTTCCGCATCTGACCCCACAGCTCTGGGCCTGCGGACCTGCCCAGGTTGGG CCACACACCCTGCCAGGACCTTCCAGGCCAGGCCGGGTGCCACCCTGCTCCACACACTGC TGTGTCTCTCGGGCTGAAGGGCCCCAAACAGATGGACTTACATGGAGCCAGGCGCCGCCC CTCCTCGATAGGGTCCACTGCTTCCCTGCCTCCAGGCCTTAGAGCGGAGGAAGCGGGGAC CCTTGAGGTCTCCGGCACCAGCTCTGTCATTCTTGTTCCTGGGGAACCCCCACTTTGACC TGCTGTTTGTTATTAAAGTTCACATTTTGAATGCCCAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATAGCCCACGCGACATCCCGGCGGCAGAGGGCGCAGGCGGCTCGGCTAATCCGGCGGGTC GACTGTCGGGCCGTCCCGCTCGGACCCCGGCCCTAGGTCTGGCCCCGAGATGGGAGCTGC TCCCTGGGGGCTGAGCTTGTCAGCATCCTGGATTGGCCCTCGCCCCTGAAGTCAAGAGAA GAGTCCCTGCGCACCCACACCTCTCTAGCTCCCTTTTGGGGTCGCTTCAGTCTGTCGGGT CTTCAGCCCTAGTGGCTGCGCAGTCCGACAAAGGAGCAGAACGATGATGCTGGCATCGGT GCTGGGGAGTGGTCCCCGGGGGGGGCCACCACTCCGGCCTCTCTTGGGGCCCGCACTCTC GCTCCGGGCCCTCTCCACATCAGCCACCGATACCCACCACGTGGAGATGGCGCGGGAGCG CTCCAAGACCGTCACCTCCTTTTACAACCAGTCGGCCATCGACGCAGCAGCGGAGAAGCC CTCAGTCCGCCTCACTCCGACCATGATGCTCTATTCAGGACGCTCTCAGGATGGCAGCCA CCTGCTGAAAAGTGCTCGGTACTTGCAGCAAGAATTGCCCGTGAGGATTGCTCACCGCAT CAAGGACTTCCGCAGCCTTCCTTTCATCATTGGCTGCAACCCCACTATACTGCACGTGCA CGAACTGTACATCCGTGCCTTCCAGAAGCTGACAGACTTCCCTCCGATCAAGGACCAGGC GGATGAGGCCCAGTACTGCCAGCTGGTGCGACAGCTGTTGGACGACCACAAGGATGTGGT GACCCTCTTGGCTGAGGGCCTGCGTGAGAGCCGGAAGCACATAGAGGACGAGAAGCTGGT CCGCTCCTTCTTAGACAAGACGCTGACTTCGAGGCTCGGGATCCGCATGTTGGCCACACA CCATCTGGCTCTACATGAGGACAAGCCCGACTTTGTTGGCATCATCTGCACTCGCCTCTC ACCAAAGAAGATTATTGAAAAATGGGTGGACTTTGCCAGACGCCTGTGTGAGCACAAGTA TGGCAACGCCCCCCGGGTCCGCATCAACGGCCACGTGGCTGCCCGTTTCCCCTTCATCCC CATGCCGCTGGACTACATCCTGCCCGAGCTGCTCAAGAATGCCATGAGAGCCACGATGGA ATGTCACCTAGACACGCCCTACAACGTCCCGGATGTGGTCATCACCATCGCCAACAACGA TATTGATCTCGTCATCAGGATTTCTGACCGGGGTGGGGGAATTGCTCACAAAGACCTGGA TCGGGTTATGGACTACCACTTCACCACGGCCGAGGCCAGTACCCAGGACCCCCGGATCAG CCCTCTCTTCGGCCACCTAGACATGCACAGTGGCAGCCAGTCAGGACCCATGCACGGCTT TGGCTTCGGGCTGCCCACGTCGCGGGCTTATGCAGAATACCTCGGTGGTTCCCTTCGGCT GCAGTCCCTGCAGGGCATCGGCACGGATGTCTACCTGCGGCTTCGGCACATCGATGGCCG GGAGGAAAGCTTCCGCATCTGACCCCACAGCTCTGGGCCTGCGGACCTGCCCAGGTTGGG CCACACACCCTGCCAGGACCTTCCAGGCCAGGCCGGGTGCCACCCTGCTCCACACACTGC TGTGTCTCTCGGGCTGAAGGGCCCCAAACAGATGGACTTACATGGAGCCAGGCGCCGCCC CTCCTCGATAGGGTCCACTGCTTCCCTGCCTCCAGGCCTTAGAGCGGAGGAAGCGGGGAC CCTTGAGGTCTCCGGCACCAGCTCTGTCATTCTTGTTCCTGGGGAACCCCCACTTTGACC TGCTGTTTGTTATTAAAGTTCACATTTTGAATGCCCAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 267-1802, - strand, RNAz p=0.992134 | |
| 706-827, + strand, RNAz p=0.984337 | |
| 711-827, - strand, RNAz p=0.735793 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 267-1802, - strand, RNAz p=0.992134 | |
| 706-827, + strand, RNAz p=0.984337 | |
| 711-827, - strand, RNAz p=0.735793 |
| Aligned organism(s): 73 entry(ies) | More info |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
| 1-126, gnl|bosTau2|chr25 (22975791-22975917) | |
| 1-126, gnl|canFam2|chr6 (20143729-20143288) | |
| 1-126, gnl|dasNov1|scaffold_54852 (1371-1825) | |
| 1-126, gnl|echTel1|scaffold_282044 (48175-47750) | |
| 1-126, gnl|fr1|chrUn (302099278-302098850) | |
| 1-126, gnl|hg17|chr16 (31027059-31027487) | |
| 1-126, gnl|Hg17|chr16 (31027194-31027318) | |
| 1-126, gnl|loxAfr1|scaffold_27247 (26609-26165) | |
| 1-126, gnl|mm7|chr7 (124000497-124000941) | |
| 1-126, gnl|Mm7|chr7 (124000617-124000754) | |
| 1-126, gnl|oryCun1|scaffold_211153 (95880-95476) | |
| 1-126, gnl|panTro1|chr18 (31818470-31818904) | |
| 1-126, gnl|rheMac2|chr20 (29199796-29200222) | |
| 1-126, gnl|rn3|chr1 (187339379-187339838) | |
| 267-525, gnl|bosTau2|chr15 (40183972-40183710) | |
| 267-525, gnl|Hg17|chr11 (34919939-34920194) | |
| 267-525, gnl|Mm7|chr2 (102902828-102902610) | |
| 547-658, gnl|bosTau2|chr25 (22977149-22977260) | |
| 547-658, gnl|canFam2|chr6 (20142262-20142134) | |
| 547-658, gnl|danRer3|chr5 (67295737-67295609) | |
| 547-658, gnl|dasNov1|scaffold_54852 (2811-2939) | |
| 547-658, gnl|echTel1|scaffold_282044 (46752-46626) | |
| 547-658, gnl|fr1|chrUn (7785865-7785739) | |
| 547-658, gnl|hg17|chr16 (31028485-31028613) | |
| 547-658, gnl|Hg17|chr16 (31028494-31028605) | |
| 547-658, gnl|loxAfr1|scaffold_123504 (1282-1154) | |
| 547-658, gnl|mm7|chr7 (124001919-124002046) | |
| 547-658, gnl|Mm7|chr7 (124001927-124002038) | |
| 547-658, gnl|monDom2|scaffold_17 (9145396-9145526) | |
| 547-658, gnl|oryCun1|scaffold_211153 (94431-94303) | |
| 547-658, gnl|panTro1|chr18 (31820122-31820250) | |
| 547-658, gnl|rheMac2|chr20 (29201199-29201327) | |
| 547-658, gnl|rn3|chr1 (187340821-187340948) | |
| 547-658, gnl|tetNig1|chrUn_random (29388544-29388670) | |
| 547-658, gnl|xenTro1|scaffold_690 (308351-308231) | |
| 706-827, gnl|bosTau2|chr25 (22977671-22977792) | |
| 706-827, gnl|canFam2|chr6 (20141710-20141556) | |
| 706-827, gnl|danRer3|chr5 (67283207-67283062) | |
| 706-827, gnl|dasNov1|scaffold_54852 (3337-3490) | |
| 706-827, gnl|echTel1|scaffold_282044 (46040-45888) | |
| 706-827, gnl|fr1|chrUn (7783919-7783791) | |
| 706-827, gnl|hg17|chr16 (31029004-31029157) | |
| 706-827, gnl|Hg17|chr16 (31029026-31029147) | |
| 706-827, gnl|loxAfr1|scaffold_123504 (749-595) | |
| 706-827, gnl|mm7|chr7 (124002408-124002562) | |
| 706-827, gnl|Mm7|chr7 (124002430-124002551) | |
| 706-827, gnl|monDom2|scaffold_17 (9146102-9146266) | |
| 706-827, gnl|oryCun1|scaffold_211153 (94025-93874) | |
| 706-827, gnl|panTro1|chr18 (31820641-31820794) | |
| 706-827, gnl|rheMac2|chr20 (29201718-29201871) | |
| 706-827, gnl|rn3|chr1 (187341281-187341435) | |
| 706-827, gnl|tetNig1|chrUn_random (29389895-29390029) | |
| 706-827, gnl|xenTro1|scaffold_690 (307949-307799) | |
| 997-1128, gnl|bosTau2|chr25 (22978569-22978700) | |
| 997-1128, gnl|canFam2|chr6 (20140847-20140671) | |
| 997-1128, gnl|danRer3|chr5 (67271422-67271265) | |
| 997-1128, gnl|dasNov1|scaffold_54852 (4189-4371) | |
| 997-1128, gnl|echTel1|scaffold_282044 (44925-44743) | |
| 997-1128, gnl|fr1|chrUn (7782808-7782640) | |
| 997-1128, gnl|hg17|chr16 (31029873-31030057) | |
| 997-1128, gnl|Hg17|chr16 (31029910-31030041) | |
| 997-1128, gnl|mm7|chr7 (124003742-124003921) | |
| 997-1128, gnl|Mm7|chr7 (124003774-124003905) | |
| 997-1128, gnl|monDom2|scaffold_17 (9146807-9146984) | |
| 997-1128, gnl|oryCun1|scaffold_211153 (93166-92982) | |
| 997-1128, gnl|panTro1|chr18 (31821510-31821694) | |
| 997-1128, gnl|rheMac2|chr20 (29202588-29202772) | |
| 997-1128, gnl|rn3|chr1 (187342881-187343043) | |
| 997-1128, gnl|tetNig1|chrUn_random (29390401-29390558) | |
| 997-1128, gnl|xenTro1|scaffold_690 (306461-306260) | |
| 1367-1836, gnl|bosTau2|chr25 (22979582-22980046) | |
| 1367-1836, gnl|Hg17|chr16 (31030932-31031389) | |
| 1367-1836, gnl|Mm7|chr7 (124004714-124005167) |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-126, gnl|bosTau2|chr25 (22975791-22975917) | |
| 1-126, gnl|canFam2|chr6 (20143729-20143288) | |
| 1-126, gnl|dasNov1|scaffold_54852 (1371-1825) | |
| 1-126, gnl|echTel1|scaffold_282044 (48175-47750) | |
| 1-126, gnl|fr1|chrUn (302099278-302098850) | |
| 1-126, gnl|hg17|chr16 (31027059-31027487) | |
| 1-126, gnl|Hg17|chr16 (31027194-31027318) | |
| 1-126, gnl|loxAfr1|scaffold_27247 (26609-26165) | |
| 1-126, gnl|mm7|chr7 (124000497-124000941) | |
| 1-126, gnl|Mm7|chr7 (124000617-124000754) | |
| 1-126, gnl|oryCun1|scaffold_211153 (95880-95476) | |
| 1-126, gnl|panTro1|chr18 (31818470-31818904) | |
| 1-126, gnl|rheMac2|chr20 (29199796-29200222) | |
| 1-126, gnl|rn3|chr1 (187339379-187339838) | |
| 267-525, gnl|bosTau2|chr15 (40183972-40183710) | |
| 267-525, gnl|Hg17|chr11 (34919939-34920194) | |
| 267-525, gnl|Mm7|chr2 (102902828-102902610) | |
| 547-658, gnl|bosTau2|chr25 (22977149-22977260) | |
| 547-658, gnl|canFam2|chr6 (20142262-20142134) | |
| 547-658, gnl|danRer3|chr5 (67295737-67295609) | |
| 547-658, gnl|dasNov1|scaffold_54852 (2811-2939) | |
| 547-658, gnl|echTel1|scaffold_282044 (46752-46626) | |
| 547-658, gnl|fr1|chrUn (7785865-7785739) | |
| 547-658, gnl|hg17|chr16 (31028485-31028613) | |
| 547-658, gnl|Hg17|chr16 (31028494-31028605) | |
| 547-658, gnl|loxAfr1|scaffold_123504 (1282-1154) | |
| 547-658, gnl|mm7|chr7 (124001919-124002046) | |
| 547-658, gnl|Mm7|chr7 (124001927-124002038) | |
| 547-658, gnl|monDom2|scaffold_17 (9145396-9145526) | |
| 547-658, gnl|oryCun1|scaffold_211153 (94431-94303) | |
| 547-658, gnl|panTro1|chr18 (31820122-31820250) | |
| 547-658, gnl|rheMac2|chr20 (29201199-29201327) | |
| 547-658, gnl|rn3|chr1 (187340821-187340948) | |
| 547-658, gnl|tetNig1|chrUn_random (29388544-29388670) | |
| 547-658, gnl|xenTro1|scaffold_690 (308351-308231) | |
| 706-827, gnl|bosTau2|chr25 (22977671-22977792) | |
| 706-827, gnl|canFam2|chr6 (20141710-20141556) | |
| 706-827, gnl|danRer3|chr5 (67283207-67283062) | |
| 706-827, gnl|dasNov1|scaffold_54852 (3337-3490) | |
| 706-827, gnl|echTel1|scaffold_282044 (46040-45888) | |
| 706-827, gnl|fr1|chrUn (7783919-7783791) | |
| 706-827, gnl|hg17|chr16 (31029004-31029157) | |
| 706-827, gnl|Hg17|chr16 (31029026-31029147) | |
| 706-827, gnl|loxAfr1|scaffold_123504 (749-595) | |
| 706-827, gnl|mm7|chr7 (124002408-124002562) | |
| 706-827, gnl|Mm7|chr7 (124002430-124002551) | |
| 706-827, gnl|monDom2|scaffold_17 (9146102-9146266) | |
| 706-827, gnl|oryCun1|scaffold_211153 (94025-93874) | |
| 706-827, gnl|panTro1|chr18 (31820641-31820794) | |
| 706-827, gnl|rheMac2|chr20 (29201718-29201871) | |
| 706-827, gnl|rn3|chr1 (187341281-187341435) | |
| 706-827, gnl|tetNig1|chrUn_random (29389895-29390029) | |
| 706-827, gnl|xenTro1|scaffold_690 (307949-307799) | |
| 997-1128, gnl|bosTau2|chr25 (22978569-22978700) | |
| 997-1128, gnl|canFam2|chr6 (20140847-20140671) | |
| 997-1128, gnl|danRer3|chr5 (67271422-67271265) | |
| 997-1128, gnl|dasNov1|scaffold_54852 (4189-4371) | |
| 997-1128, gnl|echTel1|scaffold_282044 (44925-44743) | |
| 997-1128, gnl|fr1|chrUn (7782808-7782640) | |
| 997-1128, gnl|hg17|chr16 (31029873-31030057) | |
| 997-1128, gnl|Hg17|chr16 (31029910-31030041) | |
| 997-1128, gnl|mm7|chr7 (124003742-124003921) | |
| 997-1128, gnl|Mm7|chr7 (124003774-124003905) | |
| 997-1128, gnl|monDom2|scaffold_17 (9146807-9146984) | |
| 997-1128, gnl|oryCun1|scaffold_211153 (93166-92982) | |
| 997-1128, gnl|panTro1|chr18 (31821510-31821694) | |
| 997-1128, gnl|rheMac2|chr20 (29202588-29202772) | |
| 997-1128, gnl|rn3|chr1 (187342881-187343043) | |
| 997-1128, gnl|tetNig1|chrUn_random (29390401-29390558) | |
| 997-1128, gnl|xenTro1|scaffold_690 (306461-306260) | |
| 1367-1836, gnl|bosTau2|chr25 (22979582-22980046) | |
| 1367-1836, gnl|Hg17|chr16 (31030932-31031389) | |
| 1367-1836, gnl|Mm7|chr7 (124004714-124005167) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| hlv (0.557025) | |
| ebs (0.236602) | |
| ecc (0.23007) | |
| cty (0.20816) | |
| eje (0.197668) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| med (0.116252) | |
| jca (0.11396) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (0.557025) | |
| ebs (0.236602) | |
| ecc (0.23007) | |
| cty (0.20816) | |
| eje (0.197668) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| med (0.116252) | |
| jca (0.11396) |