Non-Coding RNA Search

Ss1.1-Pig4-TMW8067G04.3

Sequence:


               
               AGAATCGCTAGCATTACTGATCACCTCATTGCCATGCTTGCGGACTATTTCAAGTATCCC
AGCTCAGTGAGTGCCATCACTGATATTAAAAGGCTTGATCATGACTTAAAGCATGCTCAT
GAACTTCGACAGGCTGCATTCAAGCTCTATGCCTCTCTTGGAGCAAACGATGAAGACATC
CGGAAGAAGGTGAGTCTGGGAGAGGGGCGTCCCCCAGTCCTGACAGCCAGCAGGCAGGGA
GTGACGTCAACCTGAAAGTCGTGGTGAAGAGCACTAACAGTGACTGTTTGAATATAATAA
AGCAGAGTGACTAAAGCATAATTGAAGAATGAATGGGACCCGGATTTGGGGGGTTGTTTG
TTTTTAGAACATAGAGTGGCATGGCCGTGCTGGAATGGCAAATAACTGGCGTGCTTTTTT
GTGTCATTAATATGGATTATTATGTTGCACATTTTTGCATGTGTTCTGATAAAAATCAAT
TCTAGCACTGTGAAGCTTCAGACACCTTGAAAGACCTAACACTAGAATTGTAAATGTTAT
TTATGGAAATACTTTCCAATGCCATTGAGAAATTCAAATCTCTATTGTATATTGTTCTTT
GATATGTGGCTTAGTTATGTTTTGATTTTTTTTGCTACTGTGCAAGTTTTATGTGAATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAATCGCTAGCATTACTGATCACCTCATTGCCATGCTTGCGGACTATTTCAAGTATCCC
AGCTCAGTGAGTGCCATCACTGATATTAAAAGGCTTGATCATGACTTAAAGCATGCTCAT
GAACTTCGACAGGCTGCATTCAAGCTCTATGCCTCTCTTGGAGCAAACGATGAAGACATC
CGGAAGAAGGTGAGTCTGGGAGAGGGGCGTCCCCCAGTCCTGACAGCCAGCAGGCAGGGA
GTGACGTCAACCTGAAAGTCGTGGTGAAGAGCACTAACAGTGACTGTTTGAATATAATAA
AGCAGAGTGACTAAAGCATAATTGAAGAATGAATGGGACCCGGATTTGGGGGGTTGTTTG
TTTTTAGAACATAGAGTGGCATGGCCGTGCTGGAATGGCAAATAACTGGCGTGCTTTTTT
GTGTCATTAATATGGATTATTATGTTGCACATTTTTGCATGTGTTCTGATAAAAATCAAT
TCTAGCACTGTGAAGCTTCAGACACCTTGAAAGACCTAACACTAGAATTGTAAATGTTAT
TTATGGAAATACTTTCCAATGCCATTGAGAAATTCAAATCTCTATTGTATATTGTTCTTT
GATATGTGGCTTAGTTATGTTTTGATTTTTTTTGCTACTGTGCAAGTTTTATGTGAATAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               93-660, gnl|bosTau2|chr1 (82244374-82243804)
               

               
               93-660, gnl|Hg17|chr3 (139446627-139447204)
               

               
               93-660, gnl|Mm7|chr9 (99163577-99162990)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               93-660, gnl|bosTau2|chr1 (82244374-82243804)
               

               
               93-660, gnl|Hg17|chr3 (139446627-139447204)
               

               
               93-660, gnl|Mm7|chr9 (99163577-99162990)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fco (0.314416)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               cag (0.151194)
               

               
               bla (0.124347)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               cag (0.151194)
               

               
               bla (0.124347)

	93-660, gnl\|bosTau2\|chr1 (82244374-82243804)
	93-660, gnl\|Hg17\|chr3 (139446627-139447204)
	93-660, gnl\|Mm7\|chr9 (99163577-99162990)

	fco (0.314416)
	tra (0.246184)
	cbe (0.239234)
	cag (0.151194)
	bla (0.124347)