Ss1.1-Pig4-TMW8067G08.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACAGTGAATGAGTCATGTTCACTTGGGCAGCTCCGAGCGTGAGTTTCTCACTGGGGGCC CAGGGCCCTCAGTCTGTTCACCAGGGCCTGTAGCTTCTCAGACAGCGCGACCTGGTACTG CTCAGGCTGCTCCAGCCGCCTGTGTGCGGGGCTCAGGCGGCTCAGGGACAGCTGGGCGAA GGCTCTAGATTCGGCCAGCGATGGGAGAGGCTCACACAGCTGTCCCTGCTGGACCCAGAG TCGCAGCAGCGGCTCCACATGGGCCGGCCTCACGGTACAGGACTCCCGGGCCCCTCGAGG CCACAGTCTCAGCTCCTGGCCCGCCTGGGGAGGAGGCTCCTCCGCCAACTGCAGCACGTC CAACAGGAGGGACCCATCGGCGCCCAGGAGGCGGAAGGCGGCCTTGCTCCCAGGCAGTGT CTGCTTCTCAGGGTCCTCGGTCAGCTTCATTCGTGGCTGGCCTCCCACGGCCACGAGCTT GTAGACACAGCCCAGGGAAGGCTGGCGAGGGCAGGTGACCACGCTCGTGCCAATGCCAAT GAGGTCCACCTCACTGCCCTTCTGGGCCAGCCTGGCCAGCTCCTCCTCGTCGATGTTGTT GCTGACGGCGATAGGGACGGACGCCAGCCAGGGCACCTGGAACTGGGCCGCGGCCCTACG GAAGACCCCGCGGACCTCCTGAGCCTGCTGAAGCAGGTCGCCACTGTCCAGCCTCACGCC CACTGCCTGGTAGCCCAGCTCCTCCAGTGCCAGGGCTACAGCCAGGAAGTTGGGGAGACC GCTCCTCCGCACACTGTAGGTGTCCAGCAGGCCCTGGAAGGCCCGGGGAAAGGCCAGGGC ATAGGCCACAAAGGCTGCCCGCTCCCCTGGGTGTGGCTCCTGCGCCCCGAGCCCCAAGTG GGCACACACACGCTCCAGCCACACCTCCACGCAGGCGGCCAGGTCCACCCTGGGGCCCTG ACCAGCAGCTGGAGCCAACATAGGGTCGGGGGGCACCTCAGCGCCTGAAAAGGAAGTGAC AAAGGAGTGCGCCAGGGTCCCGGCCACAGGCACACCCCGCAGCTGTCCTGCCAGCACGTT GCTGCTGCCATCGAAGCCGCCCAGGTAGCTGTAGGTGGAGGCCGTGAGACCCCCATCAGG GCCCTGAGCGCGTCGAAGCCCCATCTCCAGCAGCCGCTTCTCCGGCCCTGCGATCAGGCG AAGCCGCGCCGCGTTCGTGGCGATGAGGCTGGCGTAGCTGACCAGGCAGAGGAGCGGCGT CTCCAGCAGCTGCACCACCAGGAGCGGCCCGGACACCTGCAGCAGCGGTACGCCGGGGAA GGCCAAGGAGCCCTCGGGCAGCGCCCGCACCGTCACCCCGGAGCAGTCGAGGGCACGAAG GTGCTCGAAGAACGCGGGCTCTGTGTCTGGGGGCAGCACCGAGGCCAGGAACTGCACATC TGCGTCCCGCAGGCGGAAGGCGCGCAGGAAGCGCACGCAGTCGCGCAGCCCCGCGGCCAA GGCGAACGCGCCGCCGAACGGGCAGCGGCGGAAGAAGAGCTCGAACTCGGCTGCCTCCTG CGCGCGGCCGGCGCGCCAGTAGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACAGTGAATGAGTCATGTTCACTTGGGCAGCTCCGAGCGTGAGTTTCTCACTGGGGGCC CAGGGCCCTCAGTCTGTTCACCAGGGCCTGTAGCTTCTCAGACAGCGCGACCTGGTACTG CTCAGGCTGCTCCAGCCGCCTGTGTGCGGGGCTCAGGCGGCTCAGGGACAGCTGGGCGAA GGCTCTAGATTCGGCCAGCGATGGGAGAGGCTCACACAGCTGTCCCTGCTGGACCCAGAG TCGCAGCAGCGGCTCCACATGGGCCGGCCTCACGGTACAGGACTCCCGGGCCCCTCGAGG CCACAGTCTCAGCTCCTGGCCCGCCTGGGGAGGAGGCTCCTCCGCCAACTGCAGCACGTC CAACAGGAGGGACCCATCGGCGCCCAGGAGGCGGAAGGCGGCCTTGCTCCCAGGCAGTGT CTGCTTCTCAGGGTCCTCGGTCAGCTTCATTCGTGGCTGGCCTCCCACGGCCACGAGCTT GTAGACACAGCCCAGGGAAGGCTGGCGAGGGCAGGTGACCACGCTCGTGCCAATGCCAAT GAGGTCCACCTCACTGCCCTTCTGGGCCAGCCTGGCCAGCTCCTCCTCGTCGATGTTGTT GCTGACGGCGATAGGGACGGACGCCAGCCAGGGCACCTGGAACTGGGCCGCGGCCCTACG GAAGACCCCGCGGACCTCCTGAGCCTGCTGAAGCAGGTCGCCACTGTCCAGCCTCACGCC CACTGCCTGGTAGCCCAGCTCCTCCAGTGCCAGGGCTACAGCCAGGAAGTTGGGGAGACC GCTCCTCCGCACACTGTAGGTGTCCAGCAGGCCCTGGAAGGCCCGGGGAAAGGCCAGGGC ATAGGCCACAAAGGCTGCCCGCTCCCCTGGGTGTGGCTCCTGCGCCCCGAGCCCCAAGTG GGCACACACACGCTCCAGCCACACCTCCACGCAGGCGGCCAGGTCCACCCTGGGGCCCTG ACCAGCAGCTGGAGCCAACATAGGGTCGGGGGGCACCTCAGCGCCTGAAAAGGAAGTGAC AAAGGAGTGCGCCAGGGTCCCGGCCACAGGCACACCCCGCAGCTGTCCTGCCAGCACGTT GCTGCTGCCATCGAAGCCGCCCAGGTAGCTGTAGGTGGAGGCCGTGAGACCCCCATCAGG GCCCTGAGCGCGTCGAAGCCCCATCTCCAGCAGCCGCTTCTCCGGCCCTGCGATCAGGCG AAGCCGCGCCGCGTTCGTGGCGATGAGGCTGGCGTAGCTGACCAGGCAGAGGAGCGGCGT CTCCAGCAGCTGCACCACCAGGAGCGGCCCGGACACCTGCAGCAGCGGTACGCCGGGGAA GGCCAAGGAGCCCTCGGGCAGCGCCCGCACCGTCACCCCGGAGCAGTCGAGGGCACGAAG GTGCTCGAAGAACGCGGGCTCTGTGTCTGGGGGCAGCACCGAGGCCAGGAACTGCACATC TGCGTCCCGCAGGCGGAAGGCGCGCAGGAAGCGCACGCAGTCGCGCAGCCCCGCGGCCAA GGCGAACGCGCCGCCGAACGGGCAGCGGCGGAAGAAGAGCTCGAACTCGGCTGCCTCCTG CGCGCGGCCGGCGCGCCAGTAGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 840-981, - strand, RNAz p=0.866616 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 840-981, - strand, RNAz p=0.866616 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AF258565, - |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 1-114, gnl|bosTau2|chr14 (626116-626229) | |
| 1-114, gnl|Hg17|chr8 (144728105-144728216) | |
| 1-114, gnl|Mm7|chr15 (75973515-75973611) | |
| 217-375, gnl|bosTau2|chr14 (626504-626662) | |
| 217-375, gnl|Hg17|chr8 (144728501-144728659) | |
| 217-375, gnl|Mm7|chr15 (75973892-75974050) | |
| 762-981, gnl|bosTau2|chr14 (627649-627868) | |
| 762-981, gnl|Hg17|chr8 (144729938-144730155) | |
| 762-981, gnl|Mm7|chr15 (75975081-75975301) | |
| 1097-1238, gnl|bosTau2|chr14 (628321-628462) | |
| 1097-1238, gnl|canFam2|chr13 (40268726-40268871) | |
| 1097-1238, gnl|danRer3|chrNA (128492233-128492088) | |
| 1097-1238, gnl|echTel1|scaffold_155092 (168-28) | |
| 1097-1238, gnl|galGal2|chr2 (135129512-135129367) | |
| 1097-1238, gnl|hg17|chr8 (144730578-144730723) | |
| 1097-1238, gnl|Hg17|chr8 (144730581-144730722) | |
| 1097-1238, gnl|loxAfr1|scaffold_94451 (12974-13118) | |
| 1097-1238, gnl|mm7|chr15 (75975850-75975995) | |
| 1097-1238, gnl|Mm7|chr15 (75975853-75975995) | |
| 1097-1238, gnl|monDom2|scaffold_79 (4899764-4899627) | |
| 1097-1238, gnl|panTro1|chr7 (147997588-147997733) | |
| 1097-1238, gnl|rheMac2|chr8 (146208117-146208262) | |
| 1097-1238, gnl|rn3|chr7 (113901955-113902100) | |
| 1097-1238, gnl|tetNig1|chrUn_random (127368920-127368776) | |
| 1440-1584, gnl|bosTau2|chr14 (629027-629171) | |
| 1440-1584, gnl|Hg17|chr8 (144731406-144731550) | |
| 1440-1584, gnl|Mm7|chr15 (75976565-75976709) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-114, gnl|bosTau2|chr14 (626116-626229) | |
| 1-114, gnl|Hg17|chr8 (144728105-144728216) | |
| 1-114, gnl|Mm7|chr15 (75973515-75973611) | |
| 217-375, gnl|bosTau2|chr14 (626504-626662) | |
| 217-375, gnl|Hg17|chr8 (144728501-144728659) | |
| 217-375, gnl|Mm7|chr15 (75973892-75974050) | |
| 762-981, gnl|bosTau2|chr14 (627649-627868) | |
| 762-981, gnl|Hg17|chr8 (144729938-144730155) | |
| 762-981, gnl|Mm7|chr15 (75975081-75975301) | |
| 1097-1238, gnl|bosTau2|chr14 (628321-628462) | |
| 1097-1238, gnl|canFam2|chr13 (40268726-40268871) | |
| 1097-1238, gnl|danRer3|chrNA (128492233-128492088) | |
| 1097-1238, gnl|echTel1|scaffold_155092 (168-28) | |
| 1097-1238, gnl|galGal2|chr2 (135129512-135129367) | |
| 1097-1238, gnl|hg17|chr8 (144730578-144730723) | |
| 1097-1238, gnl|Hg17|chr8 (144730581-144730722) | |
| 1097-1238, gnl|loxAfr1|scaffold_94451 (12974-13118) | |
| 1097-1238, gnl|mm7|chr15 (75975850-75975995) | |
| 1097-1238, gnl|Mm7|chr15 (75975853-75975995) | |
| 1097-1238, gnl|monDom2|scaffold_79 (4899764-4899627) | |
| 1097-1238, gnl|panTro1|chr7 (147997588-147997733) | |
| 1097-1238, gnl|rheMac2|chr8 (146208117-146208262) | |
| 1097-1238, gnl|rn3|chr7 (113901955-113902100) | |
| 1097-1238, gnl|tetNig1|chrUn_random (127368920-127368776) | |
| 1440-1584, gnl|bosTau2|chr14 (629027-629171) | |
| 1440-1584, gnl|Hg17|chr8 (144731406-144731550) | |
| 1440-1584, gnl|Mm7|chr15 (75976565-75976709) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| nje (0.49776) | |
| ill (0.351185) | |
| fhi (0.339155) | |
| cov (0.264306) | |
| nco (0.161734) | |
| cli (0.152812) | |
| hyp (0.142837) | |
| ste (0.135208) | |
| pla (0.133672) | |
| bla (0.124347) | |
| eje (0.0988338) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.49776) | |
| ill (0.351185) | |
| fhi (0.339155) | |
| cov (0.264306) | |
| nco (0.161734) | |
| cli (0.152812) | |
| hyp (0.142837) | |
| ste (0.135208) | |
| pla (0.133672) | |
| bla (0.124347) | |
| eje (0.0988338) |