Non-Coding RNA Search

Ss1.1-Pig4-TMW8067G17.3

Sequence:


               
               AATGGAGCCAGTGACGGCCCTAGGTGTTCTTTCCCTTATTCTCAACATCATGTGTGCTGC
CCTGAACCTCATTCGTGGAATTCACCTTGCAGAACATTCTTTACAGGTTGCACATGAAGA
AATTGGAAATATCCTGGCTTTTCTTATTCCTTTTGTAGCCTGCATTTTCCAGTGTTACTT
GTACCTGTTCTATAGTCCAGCCAGAACTATGAAGGTGGTGCTGATGCTGCTTTTCATTTG
CCTGGGCAACATGTACCTGCATGGGCTGAGGAACCTCTGGCAAATCCTTTTCCACATAGG
AGTGGCTTTCCTGTCTTCACATCAGATACTGACGAGGCAGCTTCAGGAGAAGCAGTCTGA
CTGTGGAGTGTGAGGATGACATTGTGGGATGAACAGATCCGTTGATTTCCTTATGAGGGT
CATCAGTGTTTCCCTTTCTGCTTCTTGACTTCACCTCAAGTTTCCATCCTTGAAGTTCCT
TTCGACTAAAGCAGACTGCCACCGAGAATTGGGGATTTTTCACAGGTGCAGTTGAAAGCA
TGAGGTTGTTTGACACCCAGTCCTGGTTTTGTCCTGAGTGTTACTGCGGAATCTCCAGTT
CAGCTCGTTTACTTTGGACAGCAGAATCGGGGGCTCATTCAGAAGGAGCATTAGTGGAAG
ACCAAAATGGAATTATTTTGGTCTTTTAAATCGAATGATGCAATAAACCACTAGATTCAA
TAACAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGGAGCCAGTGACGGCCCTAGGTGTTCTTTCCCTTATTCTCAACATCATGTGTGCTGC
CCTGAACCTCATTCGTGGAATTCACCTTGCAGAACATTCTTTACAGGTTGCACATGAAGA
AATTGGAAATATCCTGGCTTTTCTTATTCCTTTTGTAGCCTGCATTTTCCAGTGTTACTT
GTACCTGTTCTATAGTCCAGCCAGAACTATGAAGGTGGTGCTGATGCTGCTTTTCATTTG
CCTGGGCAACATGTACCTGCATGGGCTGAGGAACCTCTGGCAAATCCTTTTCCACATAGG
AGTGGCTTTCCTGTCTTCACATCAGATACTGACGAGGCAGCTTCAGGAGAAGCAGTCTGA
CTGTGGAGTGTGAGGATGACATTGTGGGATGAACAGATCCGTTGATTTCCTTATGAGGGT
CATCAGTGTTTCCCTTTCTGCTTCTTGACTTCACCTCAAGTTTCCATCCTTGAAGTTCCT
TTCGACTAAAGCAGACTGCCACCGAGAATTGGGGATTTTTCACAGGTGCAGTTGAAAGCA
TGAGGTTGTTTGACACCCAGTCCTGGTTTTGTCCTGAGTGTTACTGCGGAATCTCCAGTT
CAGCTCGTTTACTTTGGACAGCAGAATCGGGGGCTCATTCAGAAGGAGCATTAGTGGAAG
ACCAAAATGGAATTATTTTGGTCTTTTAAATCGAATGATGCAATAAACCACTAGATTCAA
TAACAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               167-286, + strand, RNAz p=0.706838

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               167-286, + strand, RNAz p=0.706838

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_032970, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_032970, +

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-108, gnl|bosTau2|chr22 (7584946-7584839)
               

               
               1-108, gnl|canFam2|chr23 (14729345-14729433)
               

               
               1-108, gnl|danRer3|chr24 (9630124-9630038)
               

               
               1-108, gnl|dasNov1|scaffold_33873 (7035-6947)
               

               
               1-108, gnl|fr1|chrUn (122682493-122682409)
               

               
               1-108, gnl|galGal2|chr2 (1455128-1455216)
               

               
               1-108, gnl|hg17|chr3 (42574054-42574151)
               

               
               1-108, gnl|Hg17|chr3 (42574179-42574072)
               

               
               1-108, gnl|loxAfr1|scaffold_13643 (4052-3964)
               

               
               1-108, gnl|mm7|chr9 (121390089-121390177)
               

               
               1-108, gnl|Mm7|chr9 (121390205-121390098)
               

               
               1-108, gnl|monDom2|scaffold_5 (77589024-77589112)
               

               
               1-108, gnl|oryCun1|scaffold_212685 (68838-68747)
               

               
               1-108, gnl|panTro1|chr2 (43773867-43773964)
               

               
               1-108, gnl|rheMac2|chr2 (94018351-94018261)
               

               
               1-108, gnl|tetNig1|chr6 (3074734-3074814)
               

               
               1-108, gnl|xenTro1|scaffold_451 (148696-148793)
               


               
               167-722, gnl|bosTau2|chr22 (7581445-7580895)
               

               
               167-722, gnl|Hg17|chr3 (42569950-42569399)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-108, gnl|bosTau2|chr22 (7584946-7584839)
               

               
               1-108, gnl|canFam2|chr23 (14729345-14729433)
               

               
               1-108, gnl|danRer3|chr24 (9630124-9630038)
               

               
               1-108, gnl|dasNov1|scaffold_33873 (7035-6947)
               

               
               1-108, gnl|fr1|chrUn (122682493-122682409)
               

               
               1-108, gnl|galGal2|chr2 (1455128-1455216)
               

               
               1-108, gnl|hg17|chr3 (42574054-42574151)
               

               
               1-108, gnl|Hg17|chr3 (42574179-42574072)
               

               
               1-108, gnl|loxAfr1|scaffold_13643 (4052-3964)
               

               
               1-108, gnl|mm7|chr9 (121390089-121390177)
               

               
               1-108, gnl|Mm7|chr9 (121390205-121390098)
               

               
               1-108, gnl|monDom2|scaffold_5 (77589024-77589112)
               

               
               1-108, gnl|oryCun1|scaffold_212685 (68838-68747)
               

               
               1-108, gnl|panTro1|chr2 (43773867-43773964)
               

               
               1-108, gnl|rheMac2|chr2 (94018351-94018261)
               

               
               1-108, gnl|tetNig1|chr6 (3074734-3074814)
               

               
               1-108, gnl|xenTro1|scaffold_451 (148696-148793)
               


               
               167-722, gnl|bosTau2|chr22 (7581445-7580895)
               

               
               167-722, gnl|Hg17|chr3 (42569950-42569399)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cte (0.29274)
               

               
               fty (0.17584)
               

               
               csp (0.161186)
               

               
               spl (0.143184)
               

               
               jej (0.0989218)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               fty (0.17584)
               

               
               csp (0.161186)
               

               
               spl (0.143184)
               

               
               jej (0.0989218)

	1-108, gnl\|bosTau2\|chr22 (7584946-7584839)
	1-108, gnl\|canFam2\|chr23 (14729345-14729433)
	1-108, gnl\|danRer3\|chr24 (9630124-9630038)
	1-108, gnl\|dasNov1\|scaffold_33873 (7035-6947)
	1-108, gnl\|fr1\|chrUn (122682493-122682409)
	1-108, gnl\|galGal2\|chr2 (1455128-1455216)
	1-108, gnl\|hg17\|chr3 (42574054-42574151)
	1-108, gnl\|Hg17\|chr3 (42574179-42574072)
	1-108, gnl\|loxAfr1\|scaffold_13643 (4052-3964)
	1-108, gnl\|mm7\|chr9 (121390089-121390177)
	1-108, gnl\|Mm7\|chr9 (121390205-121390098)
	1-108, gnl\|monDom2\|scaffold_5 (77589024-77589112)
	1-108, gnl\|oryCun1\|scaffold_212685 (68838-68747)
	1-108, gnl\|panTro1\|chr2 (43773867-43773964)
	1-108, gnl\|rheMac2\|chr2 (94018351-94018261)
	1-108, gnl\|tetNig1\|chr6 (3074734-3074814)
	1-108, gnl\|xenTro1\|scaffold_451 (148696-148793)

	167-722, gnl\|bosTau2\|chr22 (7581445-7580895)
	167-722, gnl\|Hg17\|chr3 (42569950-42569399)

	cte (0.29274)
	fty (0.17584)
	csp (0.161186)
	spl (0.143184)
	jej (0.0989218)