Non-Coding RNA Search

Ss1.1-Pig4-TMW8067G18.3

Sequence:


               
               ATTAACACATATTTGTGCAAGTCCGTGTTTCCGAAATGTCCGTGTCCCAACAGAAAGTTG
TCACCGAGGGACCATTCCCCAGCCTCTGTATGAATGGTGCCCATTGTATCTCGAGTTTTG
AGCTTGGAACAATGGGAGCCCTGTTGAGAGTCCCCTGAAGTAACTCAGCCTCCTGCGTTG
TTTCACCAGGGGAGCAATTGGAAATGGCAGCCGAGGCCCCCGTGTATGTGACCTCTTTGC
TAAAAACCAGAGGGTGGTGACTGTTAACTACTATTTTCTCTTCAGTTTTCTGAAAAACCC
AGAGAAAGTTGTAAAGAAAAGCTAGTTTCTCTTCTGAGTGTTTACGGCTCTTTGCATGTT
CAAATATATAGATTCCCTGTGTGCGTGTATGTTGGCTTACCTCCTAGACTTTGGCCACTT
TGTATTCGTTCATGTTTTTCTCAGTATTCCTTTTCTTTGCGTTTTATACAAATTAAAAAC
ATTTTTAAAGCTTCTTATATACTGTAAAATCTACTAGGTGCTCTGCAAACTGGACAGATT
AGGGGACCTCAGCTACATCAATGCCTTATTCGGAACTTGTAACAGGTAATTTTTTTATAC
ATTGGTTTGTGATGGTCGAAAGCTCATTAAATTGTGACAAACTAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTAACACATATTTGTGCAAGTCCGTGTTTCCGAAATGTCCGTGTCCCAACAGAAAGTTG
TCACCGAGGGACCATTCCCCAGCCTCTGTATGAATGGTGCCCATTGTATCTCGAGTTTTG
AGCTTGGAACAATGGGAGCCCTGTTGAGAGTCCCCTGAAGTAACTCAGCCTCCTGCGTTG
TTTCACCAGGGGAGCAATTGGAAATGGCAGCCGAGGCCCCCGTGTATGTGACCTCTTTGC
TAAAAACCAGAGGGTGGTGACTGTTAACTACTATTTTCTCTTCAGTTTTCTGAAAAACCC
AGAGAAAGTTGTAAAGAAAAGCTAGTTTCTCTTCTGAGTGTTTACGGCTCTTTGCATGTT
CAAATATATAGATTCCCTGTGTGCGTGTATGTTGGCTTACCTCCTAGACTTTGGCCACTT
TGTATTCGTTCATGTTTTTCTCAGTATTCCTTTTCTTTGCGTTTTATACAAATTAAAAAC
ATTTTTAAAGCTTCTTATATACTGTAAAATCTACTAGGTGCTCTGCAAACTGGACAGATT
AGGGGACCTCAGCTACATCAATGCCTTATTCGGAACTTGTAACAGGTAATTTTTTTATAC
ATTGGTTTGTGATGGTCGAAAGCTCATTAAATTGTGACAAACTAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-144, + strand, RNAz p=0.992302

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-144, + strand, RNAz p=0.992302

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-651, gnl|bosTau2|chr16 (31061303-31060647)
               

               
               1-651, gnl|Hg17|chr1 (9924112-9923525)
               

               
               1-651, gnl|Mm7|chr4 (148486190-148487421)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-651, gnl|bosTau2|chr16 (31061303-31060647)
               

               
               1-651, gnl|Hg17|chr1 (9924112-9923525)
               

               
               1-651, gnl|Mm7|chr4 (148486190-148487421)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               amn (0.417711)
               

               
               rec (0.346141)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               lun (0.150489)
               

               
               nmm (0.132802)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               rec (0.346141)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               lun (0.150489)
               

               
               nmm (0.132802)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)

	1-651, gnl\|bosTau2\|chr16 (31061303-31060647)
	1-651, gnl\|Hg17\|chr1 (9924112-9923525)
	1-651, gnl\|Mm7\|chr4 (148486190-148487421)

	amn (0.417711)
	rec (0.346141)
	cbe (0.239234)
	mgp (0.230681)
	lun (0.150489)
	nmm (0.132802)
	thg (0.126791)
	eru (0.120048)
	cbl (0.114797)
	spc (0.113366)