Non-Coding RNA Search

Ss1.1-Pig4-TMW8067H02.3

Sequence:


               
               ACTCTATAAAATGTAGAGTTATGTGTGTGGAAGGTATAGAACAATTGGAAGTCCATGAAA
CCATAACTATATTCATACATTATCTAGACAGAATACTGTAAATTAAAGTATATTATCTCT
TTTATCAAAAGCATATCTGTAAATTTTCAGATGCTTTAATATTAAAAGAGGAGAATGTAT
GCATGCACATTTTTACACTAGGTTGGATATATATGCAAACTTCAAAAATATAAATCCAAA
GAGATTGTGAGAGTTAACTCAAACACTGCTGATACAAATAGAACTCAAATTTCTAAATTA
AAAATACCTAAACGGTATAGGATAAAATGAAAATATTATTTAAAGAGGAACTATCTCCAA
AATAGTGACTCTAGTACCTTAAATATGGGGGTTAGGTCATCGGAGGAAGCCCATACTTGA
ATGATTACTACCCACGTTACAACAATATTATTGGAATTGCAAGTGGAAATAAATTTCTAT
TGAATCAGATATATAATTTTCAGTTACTGCTGCAGAACTCTACCTTTATAATATTAAGCA
TAGGAGCATTTCTTAACTTTTGAATACTTACTAGTATAGGAATTGGTGCTGATCAAAAAT
CTCTGGAATGACTGTTAGCTGATAAAATCTATACTGACGGCACACCATTTTTCCACGCTT
GTTAAACAAACAAACAAACAAATATATATATATATATATCTTAATAAAATGAATACTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTCTATAAAATGTAGAGTTATGTGTGTGGAAGGTATAGAACAATTGGAAGTCCATGAAA
CCATAACTATATTCATACATTATCTAGACAGAATACTGTAAATTAAAGTATATTATCTCT
TTTATCAAAAGCATATCTGTAAATTTTCAGATGCTTTAATATTAAAAGAGGAGAATGTAT
GCATGCACATTTTTACACTAGGTTGGATATATATGCAAACTTCAAAAATATAAATCCAAA
GAGATTGTGAGAGTTAACTCAAACACTGCTGATACAAATAGAACTCAAATTTCTAAATTA
AAAATACCTAAACGGTATAGGATAAAATGAAAATATTATTTAAAGAGGAACTATCTCCAA
AATAGTGACTCTAGTACCTTAAATATGGGGGTTAGGTCATCGGAGGAAGCCCATACTTGA
ATGATTACTACCCACGTTACAACAATATTATTGGAATTGCAAGTGGAAATAAATTTCTAT
TGAATCAGATATATAATTTTCAGTTACTGCTGCAGAACTCTACCTTTATAATATTAAGCA
TAGGAGCATTTCTTAACTTTTGAATACTTACTAGTATAGGAATTGGTGCTGATCAAAAAT
CTCTGGAATGACTGTTAGCTGATAAAATCTATACTGACGGCACACCATTTTTCCACGCTT
GTTAAACAAACAAACAAACAAATATATATATATATATATCTTAATAAAATGAATACTGCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-198, + strand, RNAz p=0.943937

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-198, + strand, RNAz p=0.943937

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-688, gnl|bosTau2|chr7 (55942216-55942899)
               

               
               1-688, gnl|Hg17|chr5 (82971517-82970834)
               

               
               1-688, gnl|Mm7|chr13 (86684071-86684701)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-688, gnl|bosTau2|chr7 (55942216-55942899)
               

               
               1-688, gnl|Hg17|chr5 (82971517-82970834)
               

               
               1-688, gnl|Mm7|chr13 (86684071-86684701)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nca (0.410621)
               

               
               bla (0.124347)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.410621)
               

               
               bla (0.124347)

	1-688, gnl\|bosTau2\|chr7 (55942216-55942899)
	1-688, gnl\|Hg17\|chr5 (82971517-82970834)
	1-688, gnl\|Mm7\|chr13 (86684071-86684701)