Ss1.1-Pig4-TMW8067I01.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTGGTGTGGGGTTGAGTCAGTTGTGAGACCCGGAGCTGCGGACCGGCGGGCGGCCCTCC GAGCCGGCGACACAGCGGTGGGCGTCGGGTTCGGGAGCCGAGCGCTGGCCCCGCGTCGAC CCGGGCCGAGCCGCGCCGCCGCCCCCCGCCCGCAGCCACCGACCGGCCGCCGCGGGCGCG CCCCCGCTCTCCGCTGTCTCTCCGATGGCGTCCGCCTCCGGGGCCATGGCGAAGCACGAG CAGATCCTGGTCCTCGACCCGCCCACAGACCTCAAATTCAAAGGCCCCTTCACAGATGTA GTCACTACAAATCTTAAGTTGCGAAATCCGTCGGATAGAAAAGTATGTTTCAAAGTGAAG ACGACAGCGCCTCGTCGGTACTGTGTGAGGCCCAACAGTGGAATTATTGACCCGGGGTTG ACTGTGACTGTTTCAGTAATGCTGCAGCCTTTTGACTATGATCCCAACGAAAAGAGTAAA CACAAGTTTATGGTACAGACCATTTTTGCTCCACCAAACATTACAGATATGGAAGCTGTG TGGAAAGAAGCAAAACCTGATGAATTAATGGATTCTAAATTGAGATGTGTGTTTGAAATG CCCAATGAAAATGATAAATTGAACGACATGGAGCCCAGCAAAGCTGCGCCCCTGAACGCC GCCAAGCAGGATGGGCCGGTGCCAAAGCCGCACAGTGTTTCCCTCAGCGATGCGGACACC AGGAAGCTGGTGGAGGAGTGCAAGCGGCTCCAGGGAGAGATGGTGAAGCTGTCGGAGGAG AACCGGCACCTGCGGGATGAAGGCTTAAGGCTCAGAAAGGTAGCACATTCGGAAAAACCT GGATCCACCTCAGCCGCGTCCTTCAGAGATAATGTCACCAGCCCTCTTCCTTCACTCCTT GTTGTAATTGCAGCCATTTTCATTGGATTCTTTCTAGGAAAATTCATCTTGTAGAGTGAA GCATGCAGAGTGCTATTTCTTTTTTTTTCTCCCGACCAGAAAAAGATTTGTTTACCTACC ATCTCACTGGTAGTGTGGCCCACGGTGACCATTCTTTGTGTGTACAGCGTCATGTAGGCC TCGCCTTTAAAGGTCTCACGGTTAGAAATCAGTAAGAGCAGAGTGTTCGGCGCCTGGACA GAGTGTACGTGGCCAGACCATCACTAGCAGGTGTCAGTTGCACATTCAGTCCTTTATGAA ATTCATAAATAAAAAATTGTTCTTTCTTTGTGGTTTTAATAAGAGTTCAAGAATTGTTCA GAGTCTTGTAAATGTTATTTTAATAATCCCTTTAAATTTTATCTGTTGCTGTTACCTCTT GAAATATGATTTATTTAGATTGCTAATCCCACTCATTCAGGAAATGCCAAGAGGTATTCT GTGGGGAAATGGTGCCTCTTACAGTGTAAATTTTCTCCTTTACCTTTGCTAATATCATGG CAGAATTTTTCTTATCCCTCGTGAGGCAGTTGTTGACTGAGTTTTTCACCCTTACAATCC TGTCCCATGGTATTTAACATAAAAATAATAAAACCGTTAACAGATTCTAAAAAAAAAAAA TGTGTGTGTCTGTCATGTCATTAGATGGGATACCAGGGCGTGCGCTGTGGTGATTTGGGT TATAAAATGTGTAATTTATCTCACACTGAACCCTTTCATATATTACAGTATTTGCGGGGA AGAGTCCTCATTGTTTTAAGCAAAGGAATTGATAACATTTCAGGCCGCTTTTGGCATTTT GGAAGATCAAAATCCATTTGTCTTCGAGATAATATAAAATAAGCAATGAGAATAAAAGTG CTGTGATTTCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTGGTGTGGGGTTGAGTCAGTTGTGAGACCCGGAGCTGCGGACCGGCGGGCGGCCCTCC GAGCCGGCGACACAGCGGTGGGCGTCGGGTTCGGGAGCCGAGCGCTGGCCCCGCGTCGAC CCGGGCCGAGCCGCGCCGCCGCCCCCCGCCCGCAGCCACCGACCGGCCGCCGCGGGCGCG CCCCCGCTCTCCGCTGTCTCTCCGATGGCGTCCGCCTCCGGGGCCATGGCGAAGCACGAG CAGATCCTGGTCCTCGACCCGCCCACAGACCTCAAATTCAAAGGCCCCTTCACAGATGTA GTCACTACAAATCTTAAGTTGCGAAATCCGTCGGATAGAAAAGTATGTTTCAAAGTGAAG ACGACAGCGCCTCGTCGGTACTGTGTGAGGCCCAACAGTGGAATTATTGACCCGGGGTTG ACTGTGACTGTTTCAGTAATGCTGCAGCCTTTTGACTATGATCCCAACGAAAAGAGTAAA CACAAGTTTATGGTACAGACCATTTTTGCTCCACCAAACATTACAGATATGGAAGCTGTG TGGAAAGAAGCAAAACCTGATGAATTAATGGATTCTAAATTGAGATGTGTGTTTGAAATG CCCAATGAAAATGATAAATTGAACGACATGGAGCCCAGCAAAGCTGCGCCCCTGAACGCC GCCAAGCAGGATGGGCCGGTGCCAAAGCCGCACAGTGTTTCCCTCAGCGATGCGGACACC AGGAAGCTGGTGGAGGAGTGCAAGCGGCTCCAGGGAGAGATGGTGAAGCTGTCGGAGGAG AACCGGCACCTGCGGGATGAAGGCTTAAGGCTCAGAAAGGTAGCACATTCGGAAAAACCT GGATCCACCTCAGCCGCGTCCTTCAGAGATAATGTCACCAGCCCTCTTCCTTCACTCCTT GTTGTAATTGCAGCCATTTTCATTGGATTCTTTCTAGGAAAATTCATCTTGTAGAGTGAA GCATGCAGAGTGCTATTTCTTTTTTTTTCTCCCGACCAGAAAAAGATTTGTTTACCTACC ATCTCACTGGTAGTGTGGCCCACGGTGACCATTCTTTGTGTGTACAGCGTCATGTAGGCC TCGCCTTTAAAGGTCTCACGGTTAGAAATCAGTAAGAGCAGAGTGTTCGGCGCCTGGACA GAGTGTACGTGGCCAGACCATCACTAGCAGGTGTCAGTTGCACATTCAGTCCTTTATGAA ATTCATAAATAAAAAATTGTTCTTTCTTTGTGGTTTTAATAAGAGTTCAAGAATTGTTCA GAGTCTTGTAAATGTTATTTTAATAATCCCTTTAAATTTTATCTGTTGCTGTTACCTCTT GAAATATGATTTATTTAGATTGCTAATCCCACTCATTCAGGAAATGCCAAGAGGTATTCT GTGGGGAAATGGTGCCTCTTACAGTGTAAATTTTCTCCTTTACCTTTGCTAATATCATGG CAGAATTTTTCTTATCCCTCGTGAGGCAGTTGTTGACTGAGTTTTTCACCCTTACAATCC TGTCCCATGGTATTTAACATAAAAATAATAAAACCGTTAACAGATTCTAAAAAAAAAAAA TGTGTGTGTCTGTCATGTCATTAGATGGGATACCAGGGCGTGCGCTGTGGTGATTTGGGT TATAAAATGTGTAATTTATCTCACACTGAACCCTTTCATATATTACAGTATTTGCGGGGA AGAGTCCTCATTGTTTTAAGCAAAGGAATTGATAACATTTCAGGCCGCTTTTGGCATTTT GGAAGATCAAAATCCATTTGTCTTCGAGATAATATAAAATAAGCAATGAGAATAAAAGTG CTGTGATTTCAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 685-802, - strand, RNAz p=0.832554 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 685-802, - strand, RNAz p=0.832554 |
| Aligned organism(s): 45 entry(ies) | More info |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
| 1-110, gnl|bosTau2|chr21 (47435691-47435582) | |
| 1-110, gnl|Hg17|chr18 (9904042-9904177) | |
| 1-110, gnl|Mm7|chr17 (63831007-63830864) | |
| 225-802, gnl|bosTau2|chr23 (25856568-25855988) | |
| 282-417, gnl|bosTau2|chr13 (39263306-39263171) | |
| 282-417, gnl|canFam2|chr24 (46188978-46189158) | |
| 282-417, gnl|danRer3|chr6 (31588057-31587882) | |
| 282-417, gnl|dasNov1|scaffold_34943 (5289-5469) | |
| 282-417, gnl|echTel1|scaffold_60043 (771-591) | |
| 282-417, gnl|fr1|chrUn (115276841-115276666) | |
| 282-417, gnl|galGal2|chr20 (10711316-10711138) | |
| 282-417, gnl|hg17|chr20 (56426655-56426835) | |
| 282-417, gnl|Hg17|chr20 (56426671-56426806) | |
| 282-417, gnl|loxAfr1|scaffold_55321 (3894-4074) | |
| 282-417, gnl|mm7|chr2 (173506493-173506673) | |
| 282-417, gnl|Mm7|chr2 (173506509-173506644) | |
| 282-417, gnl|monDom2|scaffold_1 (172799261-172799447) | |
| 282-417, gnl|oryCun1|scaffold_170545 (9269-9449) | |
| 282-417, gnl|panTro1|chr21 (59413991-59414171) | |
| 282-417, gnl|rheMac2|chr10 (6101624-6101444) | |
| 282-417, gnl|rn3|chr3 (164560220-164560400) | |
| 282-417, gnl|tetNig1|chr11 (7384917-7385092) | |
| 282-417, gnl|xenTro1|scaffold_333 (883572-883395) | |
| 428-539, gnl|bosTau2|chr13 (39250275-39250164) | |
| 428-539, gnl|canFam2|chr24 (46203041-46203168) | |
| 428-539, gnl|danRer3|chr6 (31560416-31560291) | |
| 428-539, gnl|dasNov1|scaffold_86155 (39575-39702) | |
| 428-539, gnl|echTel1|scaffold_280455 (42439-42312) | |
| 428-539, gnl|fr1|chrUn (115274759-115274638) | |
| 428-539, gnl|galGal2|chr20 (10704217-10704083) | |
| 428-539, gnl|hg17|chr20 (56443050-56443177) | |
| 428-539, gnl|Hg17|chr20 (56443055-56443166) | |
| 428-539, gnl|loxAfr1|scaffold_58199 (8805-8678) | |
| 428-539, gnl|mm7|chr2 (173515901-173516027) | |
| 428-539, gnl|Mm7|chr2 (173515906-173516017) | |
| 428-539, gnl|monDom2|scaffold_1 (172819653-172819780) | |
| 428-539, gnl|oryCun1|scaffold_33900 (1241-1130) | |
| 428-539, gnl|panTro1|chr21 (59430497-59430624) | |
| 428-539, gnl|rheMac2|chr10 (6086029-6085902) | |
| 428-539, gnl|rn3|chr3 (164568453-164568579) | |
| 428-539, gnl|tetNig1|chr11 (7386839-7386960) | |
| 428-539, gnl|xenTro1|scaffold_333 (879821-879691) | |
| 1026-1548, gnl|bosTau2|chr21 (47434519-47433995) | |
| 1026-1548, gnl|Hg17|chr18 (9944284-9944814) | |
| 1026-1548, gnl|Mm7|chr17 (63798057-63797540) |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-110, gnl|bosTau2|chr21 (47435691-47435582) | |
| 1-110, gnl|Hg17|chr18 (9904042-9904177) | |
| 1-110, gnl|Mm7|chr17 (63831007-63830864) | |
| 225-802, gnl|bosTau2|chr23 (25856568-25855988) | |
| 282-417, gnl|bosTau2|chr13 (39263306-39263171) | |
| 282-417, gnl|canFam2|chr24 (46188978-46189158) | |
| 282-417, gnl|danRer3|chr6 (31588057-31587882) | |
| 282-417, gnl|dasNov1|scaffold_34943 (5289-5469) | |
| 282-417, gnl|echTel1|scaffold_60043 (771-591) | |
| 282-417, gnl|fr1|chrUn (115276841-115276666) | |
| 282-417, gnl|galGal2|chr20 (10711316-10711138) | |
| 282-417, gnl|hg17|chr20 (56426655-56426835) | |
| 282-417, gnl|Hg17|chr20 (56426671-56426806) | |
| 282-417, gnl|loxAfr1|scaffold_55321 (3894-4074) | |
| 282-417, gnl|mm7|chr2 (173506493-173506673) | |
| 282-417, gnl|Mm7|chr2 (173506509-173506644) | |
| 282-417, gnl|monDom2|scaffold_1 (172799261-172799447) | |
| 282-417, gnl|oryCun1|scaffold_170545 (9269-9449) | |
| 282-417, gnl|panTro1|chr21 (59413991-59414171) | |
| 282-417, gnl|rheMac2|chr10 (6101624-6101444) | |
| 282-417, gnl|rn3|chr3 (164560220-164560400) | |
| 282-417, gnl|tetNig1|chr11 (7384917-7385092) | |
| 282-417, gnl|xenTro1|scaffold_333 (883572-883395) | |
| 428-539, gnl|bosTau2|chr13 (39250275-39250164) | |
| 428-539, gnl|canFam2|chr24 (46203041-46203168) | |
| 428-539, gnl|danRer3|chr6 (31560416-31560291) | |
| 428-539, gnl|dasNov1|scaffold_86155 (39575-39702) | |
| 428-539, gnl|echTel1|scaffold_280455 (42439-42312) | |
| 428-539, gnl|fr1|chrUn (115274759-115274638) | |
| 428-539, gnl|galGal2|chr20 (10704217-10704083) | |
| 428-539, gnl|hg17|chr20 (56443050-56443177) | |
| 428-539, gnl|Hg17|chr20 (56443055-56443166) | |
| 428-539, gnl|loxAfr1|scaffold_58199 (8805-8678) | |
| 428-539, gnl|mm7|chr2 (173515901-173516027) | |
| 428-539, gnl|Mm7|chr2 (173515906-173516017) | |
| 428-539, gnl|monDom2|scaffold_1 (172819653-172819780) | |
| 428-539, gnl|oryCun1|scaffold_33900 (1241-1130) | |
| 428-539, gnl|panTro1|chr21 (59430497-59430624) | |
| 428-539, gnl|rheMac2|chr10 (6086029-6085902) | |
| 428-539, gnl|rn3|chr3 (164568453-164568579) | |
| 428-539, gnl|tetNig1|chr11 (7386839-7386960) | |
| 428-539, gnl|xenTro1|scaffold_333 (879821-879691) | |
| 1026-1548, gnl|bosTau2|chr21 (47434519-47433995) | |
| 1026-1548, gnl|Hg17|chr18 (9944284-9944814) | |
| 1026-1548, gnl|Mm7|chr17 (63798057-63797540) |
| Expressed library(ies): 68 entry(ies) | More info |
| Expressed library(ies): 68 entry(ies) | Help | Less info |
| tbr (2.46685) | |
| ste (2.29854) | |
| bfe (1.79829) | |
| ldo (1.55204) | |
| isp (1.50376) | |
| ssp (1.21968) | |
| ski (1.17388) | |
| sme (0.91631) | |
| sin (0.874738) | |
| nms (0.855432) | |
| duo (0.691204) | |
| sug (0.636456) | |
| tra (0.61546) | |
| lun (0.601956) | |
| fce (0.543183) | |
| cbe (0.478469) | |
| mgp (0.461361) | |
| cbl (0.45919) | |
| ece (0.45861) | |
| csk (0.422238) | |
| tes (0.415628) | |
| pla (0.401016) | |
| lyg (0.399308) | |
| mgm (0.360685) | |
| clu (0.358938) | |
| fbs (0.350693) | |
| rec (0.346141) | |
| spc (0.340097) | |
| vin (0.332557) | |
| mga (0.32041) | |
| cag (0.302389) | |
| fat (0.294855) | |
| pty (0.285429) | |
| thg (0.253582) | |
| ese (0.253004) | |
| pan (0.23596) | |
| ecc (0.23007) | |
| mas (0.210305) | |
| cty (0.20816) | |
| hea (0.204499) | |
| nbm (0.198649) | |
| eje (0.197668) | |
| cmu (0.186393) | |
| sto (0.179824) | |
| gul (0.177588) | |
| fty (0.17584) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cki (0.165235) | |
| cje (0.165235) | |
| nco (0.161734) | |
| csp (0.161186) | |
| fco (0.157208) | |
| ctl (0.153069) | |
| cli (0.152812) | |
| liv (0.146284) | |
| lin (0.145603) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| che (0.136314) | |
| kid (0.129735) | |
| ova (0.129132) | |
| bla (0.124347) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| jca (0.11396) |
| Expressed library(ies): 68 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tbr (2.46685) | |
| ste (2.29854) | |
| bfe (1.79829) | |
| ldo (1.55204) | |
| isp (1.50376) | |
| ssp (1.21968) | |
| ski (1.17388) | |
| sme (0.91631) | |
| sin (0.874738) | |
| nms (0.855432) | |
| duo (0.691204) | |
| sug (0.636456) | |
| tra (0.61546) | |
| lun (0.601956) | |
| fce (0.543183) | |
| cbe (0.478469) | |
| mgp (0.461361) | |
| cbl (0.45919) | |
| ece (0.45861) | |
| csk (0.422238) | |
| tes (0.415628) | |
| pla (0.401016) | |
| lyg (0.399308) | |
| mgm (0.360685) | |
| clu (0.358938) | |
| fbs (0.350693) | |
| rec (0.346141) | |
| spc (0.340097) | |
| vin (0.332557) | |
| mga (0.32041) | |
| cag (0.302389) | |
| fat (0.294855) | |
| pty (0.285429) | |
| thg (0.253582) | |
| ese (0.253004) | |
| pan (0.23596) | |
| ecc (0.23007) | |
| mas (0.210305) | |
| cty (0.20816) | |
| hea (0.204499) | |
| nbm (0.198649) | |
| eje (0.197668) | |
| cmu (0.186393) | |
| sto (0.179824) | |
| gul (0.177588) | |
| fty (0.17584) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cki (0.165235) | |
| cje (0.165235) | |
| nco (0.161734) | |
| csp (0.161186) | |
| fco (0.157208) | |
| ctl (0.153069) | |
| cli (0.152812) | |
| liv (0.146284) | |
| lin (0.145603) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| che (0.136314) | |
| kid (0.129735) | |
| ova (0.129132) | |
| bla (0.124347) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| jca (0.11396) |