Non-Coding RNA Search

Ss1.1-Pig4-TMW8067I20.3

Sequence:


               
               TCCATAATACTGATTGAGTTTCAGTTGAGGGGTAAGAAACCTTTCCAGCGAGGTTTCAAT
CAACAAGGATTGTCATAACCCATGTACTTTCTCAGGTTAGTATGTTATAACTTAATATAT
TAAATAACACTTTTGCTTCCAGTAATACATTTGCAGTACATAAGTACTGCAAAACAGCTT
GGTCCTGAATAAAATCTACTTTTGAGTGCATTAATAGGTTCAAAGAGAGTTGCGAAAGTC
TCCAATAACTATGCCTCTTATTTTTTCTCCCTGACAAAATGAACACATTTTGATGTGGAA
ATTATGAAAACTATATTAAGCATAAGGTAGACAGTGGTTACCTGGATGACAAATAACTAT
CGTAGTACTGCTATATGCAATTCTTCTCAGACCATAAACAAGGAGATAAATCTGAATCTG
AGATGCTATTCCATCCATGACAGTTGAAGTGGGCCTCAGCTTGTAATACCTTGGCCAGAA
GCAAGACAAAAGCCAAAGATTCCCAAGATTAAGATAAAGCAATATTATTTCATGATTAAA
GATCACCAGGTGCAAGTTGAAACTAGTAGGAGAAAGAACTTGTAGAAATAAACTTTGGAC
TCAGTACTCCAATATCTTAGCACCAACAACATACATGAAGGATGGAACCACAGGCAGATC
TGAAAAAGAAACAAATGAGACTGCTAGGTGAGAAATATGTTACTTTGCAATTAGAAAAAA
AACTGTCAGACATATTGACTATAATATTAGACTCAGCCAAAGTAACAATATACAAGCTGG
AAGCTAGATCTAAAGAAATTATCCATGTGCAGCAAGGATAAACAAGGTGCTAGAAAATGT
AAAAAAGAGAAGTTAAGAGATAAGGAAGGTAGAATTATGAAGACCAGAAGTACCAGCAGC
AGAGAATAGAGAGGTTGGAGGAGTGGCAGTATTTGAAGCGGTAACAGAATTTTCTACATT
TGTTGGAAATACAAGAACTCATAAATTCAGGAAGCACAACAAATCCCAAGCATATATAGA
TAAAAATCCTAAACCTAAATCCAATATAACATAACTGTGAGATACCAAACTGAAGATTTT
TAAAGCAATCAAAGGGGGAAAAAGAACATAAGTGAAGGCAAGACAGATACTTCAGAAGGC
TTCTCAATAGCAACAGTGTATTCAAAAGATGGTGGAACAGTGCCTTCAAAATTCTGAGAA
AAATAAATTATCTGCCTGGACTTTGTACAAAGCAAAACTGAAATAAAGACATGTTCAAAT
GAAAAACATATTTTATCATCATTGTAACTTAATTAAAGAAAACTGCAAAAGATGATCTTC
AAGAAGGTAAATGATTCCAAAAGGACGATTGGAAATTAAAGAACTAGTGGGCAAATAAAT
GAAAAATATGTAAATCAAAAGTATTGTTTATATAAAAAAGTGTTTATAAGAAGCAACATT
GTAAATAAAACTAAATAAACATTTTATGCAACATTAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCATAATACTGATTGAGTTTCAGTTGAGGGGTAAGAAACCTTTCCAGCGAGGTTTCAAT
CAACAAGGATTGTCATAACCCATGTACTTTCTCAGGTTAGTATGTTATAACTTAATATAT
TAAATAACACTTTTGCTTCCAGTAATACATTTGCAGTACATAAGTACTGCAAAACAGCTT
GGTCCTGAATAAAATCTACTTTTGAGTGCATTAATAGGTTCAAAGAGAGTTGCGAAAGTC
TCCAATAACTATGCCTCTTATTTTTTCTCCCTGACAAAATGAACACATTTTGATGTGGAA
ATTATGAAAACTATATTAAGCATAAGGTAGACAGTGGTTACCTGGATGACAAATAACTAT
CGTAGTACTGCTATATGCAATTCTTCTCAGACCATAAACAAGGAGATAAATCTGAATCTG
AGATGCTATTCCATCCATGACAGTTGAAGTGGGCCTCAGCTTGTAATACCTTGGCCAGAA
GCAAGACAAAAGCCAAAGATTCCCAAGATTAAGATAAAGCAATATTATTTCATGATTAAA
GATCACCAGGTGCAAGTTGAAACTAGTAGGAGAAAGAACTTGTAGAAATAAACTTTGGAC
TCAGTACTCCAATATCTTAGCACCAACAACATACATGAAGGATGGAACCACAGGCAGATC
TGAAAAAGAAACAAATGAGACTGCTAGGTGAGAAATATGTTACTTTGCAATTAGAAAAAA
AACTGTCAGACATATTGACTATAATATTAGACTCAGCCAAAGTAACAATATACAAGCTGG
AAGCTAGATCTAAAGAAATTATCCATGTGCAGCAAGGATAAACAAGGTGCTAGAAAATGT
AAAAAAGAGAAGTTAAGAGATAAGGAAGGTAGAATTATGAAGACCAGAAGTACCAGCAGC
AGAGAATAGAGAGGTTGGAGGAGTGGCAGTATTTGAAGCGGTAACAGAATTTTCTACATT
TGTTGGAAATACAAGAACTCATAAATTCAGGAAGCACAACAAATCCCAAGCATATATAGA
TAAAAATCCTAAACCTAAATCCAATATAACATAACTGTGAGATACCAAACTGAAGATTTT
TAAAGCAATCAAAGGGGGAAAAAGAACATAAGTGAAGGCAAGACAGATACTTCAGAAGGC
TTCTCAATAGCAACAGTGTATTCAAAAGATGGTGGAACAGTGCCTTCAAAATTCTGAGAA
AAATAAATTATCTGCCTGGACTTTGTACAAAGCAAAACTGAAATAAAGACATGTTCAAAT
GAAAAACATATTTTATCATCATTGTAACTTAATTAAAGAAAACTGCAAAAGATGATCTTC
AAGAAGGTAAATGATTCCAAAAGGACGATTGGAAATTAAAGAACTAGTGGGCAAATAAAT
GAAAAATATGTAAATCAAAAGTATTGTTTATATAAAAAAGTGTTTATAAGAAGCAACATT
GTAAATAAAACTAAATAAACATTTTATGCAACATTAAAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-1477, gnl|bosTau2|chr16 (48961822-48960349)
               

               
               1-1477, gnl|Hg17|chr1 (183120660-183122167)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1477, gnl|bosTau2|chr16 (48961822-48960349)
               

               
               1-1477, gnl|Hg17|chr1 (183120660-183122167)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

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               liv (0.877706)
               

               
               sag (0.548145)
               

               
               mgm (0.541028)
               

               
               tra (0.492368)
               

               
               cbe (0.478469)
               

               
               tbr (0.308356)
               

               
               bfe (0.299715)
               

               
               lyg (0.266205)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               gul (0.177588)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               sug (0.127291)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.877706)
               

               
               sag (0.548145)
               

               
               mgm (0.541028)
               

               
               tra (0.492368)
               

               
               cbe (0.478469)
               

               
               tbr (0.308356)
               

               
               bfe (0.299715)
               

               
               lyg (0.266205)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               gul (0.177588)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               sug (0.127291)

	1-1477, gnl\|bosTau2\|chr16 (48961822-48960349)
	1-1477, gnl\|Hg17\|chr1 (183120660-183122167)

	liv (0.877706)
	sag (0.548145)
	mgm (0.541028)
	tra (0.492368)
	cbe (0.478469)
	tbr (0.308356)
	bfe (0.299715)
	lyg (0.266205)
	ret (0.257467)
	mgp (0.230681)
	gul (0.177588)
	ski (0.146735)
	lin (0.145603)
	lnt (0.142308)
	kid (0.129735)
	sug (0.127291)