Non-Coding RNA Search

Ss1.1-Pig4-TMW8067J07.3

Sequence:


               
               GAGCGCTAGCCACAGTGACAGTCCCGAGGCCGAAGAAACAGAGATGAAAGCCCTCAGTGA
GCGTGTCAGCATCCTTTGAGCTCCATCCCCTATAATCTGTCAAAACACTGTGGAATTAAT
AAATACATACGGTCAGGTTTAACATTTGCCTTGCAGAACTGCCATTATTTTCTGTCAGAT
GAGAACAAAGCTGTTAAACTGTTAGCACTGTTGATATATCTGAGTTGCCAAGACAAATCA
ACAGAAGCATTTGTATTTTGTGTGACCAACTGTGTTGTATTAACAAAAGTTCCCTGAAAC
ACTAAACTTGTTATTGTGAATGATTCATGTTATATTTAATGCATTAAACCTGTCTCCACT
GTGCCTTTGCAAATCGGTGTTTTTCTTACTAGAGCCTCAATTTGATAAGTCTACGGAACT
GGTCCACAAAATAGTTCTGTTCTTTGTGTTCCATTGGTGTTGTCATTATAAGCAAACTCT
CGAAGAGTAGGTTATTACCAGTGTTCTATGAACAACTCCAAAATTCATGTGAAGAAAAAG
GAATTATGGGAGCTGAGGGGTCGGAGGATGGATATGCAATCCTAAGACACAAATGCATGA
AGGAGTTTTATTGTATAGTTTCAAATCCTTTGCCTGCCTCGTGTGCCTCAGTATGTTCAA
ACTCAAGTAAGTGGGCCTGGGTGTGCCTACTACTCTTAAGCCTAAATGCCTTAGAAATGT
AACTGCCATGTACAACAGGTATATCTCCCCCTTTCTTACAGTACCCCGCTGTACTATGGA
AAATCAGCAGCTAAGCCACCTTTCACCTTTGTGTATTTTTCAAAAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCGCTAGCCACAGTGACAGTCCCGAGGCCGAAGAAACAGAGATGAAAGCCCTCAGTGA
GCGTGTCAGCATCCTTTGAGCTCCATCCCCTATAATCTGTCAAAACACTGTGGAATTAAT
AAATACATACGGTCAGGTTTAACATTTGCCTTGCAGAACTGCCATTATTTTCTGTCAGAT
GAGAACAAAGCTGTTAAACTGTTAGCACTGTTGATATATCTGAGTTGCCAAGACAAATCA
ACAGAAGCATTTGTATTTTGTGTGACCAACTGTGTTGTATTAACAAAAGTTCCCTGAAAC
ACTAAACTTGTTATTGTGAATGATTCATGTTATATTTAATGCATTAAACCTGTCTCCACT
GTGCCTTTGCAAATCGGTGTTTTTCTTACTAGAGCCTCAATTTGATAAGTCTACGGAACT
GGTCCACAAAATAGTTCTGTTCTTTGTGTTCCATTGGTGTTGTCATTATAAGCAAACTCT
CGAAGAGTAGGTTATTACCAGTGTTCTATGAACAACTCCAAAATTCATGTGAAGAAAAAG
GAATTATGGGAGCTGAGGGGTCGGAGGATGGATATGCAATCCTAAGACACAAATGCATGA
AGGAGTTTTATTGTATAGTTTCAAATCCTTTGCCTGCCTCGTGTGCCTCAGTATGTTCAA
ACTCAAGTAAGTGGGCCTGGGTGTGCCTACTACTCTTAAGCCTAAATGCCTTAGAAATGT
AACTGCCATGTACAACAGGTATATCTCCCCCTTTCTTACAGTACCCCGCTGTACTATGGA
AAATCAGCAGCTAAGCCACCTTTCACCTTTGTGTATTTTTCAAAAATA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               121-320, + strand, RNAz p=0.839052

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-320, + strand, RNAz p=0.839052

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_002742, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_002742, +

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

Help | Less info


               
               2-828, gnl|bosTau2|chr21 (27252009-27252831)
               

               
               2-828, gnl|canFam2|chr8 (12009230-12009905)
               

               
               2-828, gnl|dasNov1|scaffold_1930 (31103-30433)
               

               
               2-828, gnl|echTel1|scaffold_267793 (1214-545)
               

               
               2-828, gnl|galGal2|chr5 (30699544-30700230)
               

               
               2-828, gnl|hg17|chr14 (29115452-29116127)
               

               
               2-828, gnl|Hg17|chr14 (29116272-29115455)
               

               
               2-828, gnl|loxAfr1|scaffold_98659 (3064-3743)
               

               
               2-828, gnl|mm7|chr12 (48347956-48348641)
               

               
               2-828, gnl|Mm7|chr12 (48348785-48347959)
               

               
               2-828, gnl|monDom2|scaffold_53 (1711161-1711885)
               

               
               2-828, gnl|oryCun1|scaffold_210115 (4486-3805)
               

               
               2-828, gnl|panTro1|chr15 (28249341-28250016)
               

               
               2-828, gnl|rheMac2|chr7 (92490302-92490978)
               

               
               2-828, gnl|rn3|chr6 (70366508-70367194)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-828, gnl|bosTau2|chr21 (27252009-27252831)
               

               
               2-828, gnl|canFam2|chr8 (12009230-12009905)
               

               
               2-828, gnl|dasNov1|scaffold_1930 (31103-30433)
               

               
               2-828, gnl|echTel1|scaffold_267793 (1214-545)
               

               
               2-828, gnl|galGal2|chr5 (30699544-30700230)
               

               
               2-828, gnl|hg17|chr14 (29115452-29116127)
               

               
               2-828, gnl|Hg17|chr14 (29116272-29115455)
               

               
               2-828, gnl|loxAfr1|scaffold_98659 (3064-3743)
               

               
               2-828, gnl|mm7|chr12 (48347956-48348641)
               

               
               2-828, gnl|Mm7|chr12 (48348785-48347959)
               

               
               2-828, gnl|monDom2|scaffold_53 (1711161-1711885)
               

               
               2-828, gnl|oryCun1|scaffold_210115 (4486-3805)
               

               
               2-828, gnl|panTro1|chr15 (28249341-28250016)
               

               
               2-828, gnl|rheMac2|chr7 (92490302-92490978)
               

               
               2-828, gnl|rn3|chr6 (70366508-70367194)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               gul (0.355177)
               

               
               pan (0.23596)
               

               
               aor (0.195274)
               

               
               rec (0.17307)
               

               
               fat (0.147427)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.355177)
               

               
               pan (0.23596)
               

               
               aor (0.195274)
               

               
               rec (0.17307)
               

               
               fat (0.147427)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)

	2-828, gnl\|bosTau2\|chr21 (27252009-27252831)
	2-828, gnl\|canFam2\|chr8 (12009230-12009905)
	2-828, gnl\|dasNov1\|scaffold_1930 (31103-30433)
	2-828, gnl\|echTel1\|scaffold_267793 (1214-545)
	2-828, gnl\|galGal2\|chr5 (30699544-30700230)
	2-828, gnl\|hg17\|chr14 (29115452-29116127)
	2-828, gnl\|Hg17\|chr14 (29116272-29115455)
	2-828, gnl\|loxAfr1\|scaffold_98659 (3064-3743)
	2-828, gnl\|mm7\|chr12 (48347956-48348641)
	2-828, gnl\|Mm7\|chr12 (48348785-48347959)
	2-828, gnl\|monDom2\|scaffold_53 (1711161-1711885)
	2-828, gnl\|oryCun1\|scaffold_210115 (4486-3805)
	2-828, gnl\|panTro1\|chr15 (28249341-28250016)
	2-828, gnl\|rheMac2\|chr7 (92490302-92490978)
	2-828, gnl\|rn3\|chr6 (70366508-70367194)

	gul (0.355177)
	pan (0.23596)
	aor (0.195274)
	rec (0.17307)
	fat (0.147427)
	lyg (0.133103)
	ova (0.129132)