Non-Coding RNA Search

Ss1.1-Pig4-TMW8067J21.3

Sequence:


               
               GAGGCAGCCGAGCTACCCTAGGCTTTCAAGCTCGCACGTCCCACCGGAGCCTCTCACTGA
TTCCCCGCCGCCACCACCGTTCCCTGAGCCGCGAAAGACATGAGCCAGGCCCGCTGGACC
GGGAAGAGAACAGATATGCTCCCGGAGATCGCTGCCGCTGTAGGTTTCCTCTCCAGCCTC
CTCAGGACCCGGGGCTGCGTGAGCGAGCAGCGACTCAAGGTTTTCAGCGGGGCTCTCCAG
GAGGCACTGACAGAGCACTACAAACACCACTGGTTTCCTGAAAAGCCATCCAAGGGCTCT
GGCTACCGCTGCATTCGCATCAACCACAAAATGGACCCCATCATCAGTAAAGTGGCTAGC
CAGATTGGACTCAGTCAGCCCCAGCTGCACCAGCTGCTGCCCAGCGAGCTGACCCTGTGG
GTGGACCCCTATGAAGTGTCCTATCGCATCGGGGAGGATGGCTCCATCTGTGTCCTGTAC
GAGGAGGCCCCGGTGGCCACCTCCTATGGGCTCCTCACCTGCAAGAACCAAATGATGCTG
GGCAGGAGCAGCCCCTCGAAGAACTACGTCATGGCGGTCTCCAGTTAGATCCCCTGTGGC
CCCCACCTGGCACTCTACTGTACTCATTCTGCCTGCCGTGACAACAGGCCATTGCATACC
TCAACCTGGGGAACTGTATTTTAAATGAAGAGCTATTTATATATATATTATTTTTTTTTT
TTAAGAAAAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGCAGCCGAGCTACCCTAGGCTTTCAAGCTCGCACGTCCCACCGGAGCCTCTCACTGA
TTCCCCGCCGCCACCACCGTTCCCTGAGCCGCGAAAGACATGAGCCAGGCCCGCTGGACC
GGGAAGAGAACAGATATGCTCCCGGAGATCGCTGCCGCTGTAGGTTTCCTCTCCAGCCTC
CTCAGGACCCGGGGCTGCGTGAGCGAGCAGCGACTCAAGGTTTTCAGCGGGGCTCTCCAG
GAGGCACTGACAGAGCACTACAAACACCACTGGTTTCCTGAAAAGCCATCCAAGGGCTCT
GGCTACCGCTGCATTCGCATCAACCACAAAATGGACCCCATCATCAGTAAAGTGGCTAGC
CAGATTGGACTCAGTCAGCCCCAGCTGCACCAGCTGCTGCCCAGCGAGCTGACCCTGTGG
GTGGACCCCTATGAAGTGTCCTATCGCATCGGGGAGGATGGCTCCATCTGTGTCCTGTAC
GAGGAGGCCCCGGTGGCCACCTCCTATGGGCTCCTCACCTGCAAGAACCAAATGATGCTG
GGCAGGAGCAGCCCCTCGAAGAACTACGTCATGGCGGTCTCCAGTTAGATCCCCTGTGGC
CCCCACCTGGCACTCTACTGTACTCATTCTGCCTGCCGTGACAACAGGCCATTGCATACC
TCAACCTGGGGAACTGTATTTTAAATGAAGAGCTATTTATATATATATTATTTTTTTTTT
TTAAGAAAAGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               BTG2_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               BTG2_RAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               250-568, - strand, RNAz p=0.765886

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               250-568, - strand, RNAz p=0.765886

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               250-722, gnl|bosTau2|chr16 (2463944-2464414)
               

               
               250-722, gnl|Hg17|chr1 (200007885-200008335)
               

               
               250-722, gnl|Mm7|chr1 (133967492-133967036)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               250-722, gnl|bosTau2|chr16 (2463944-2464414)
               

               
               250-722, gnl|Hg17|chr1 (200007885-200008335)
               

               
               250-722, gnl|Mm7|chr1 (133967492-133967036)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               pla (2.00508)
               

               
               med (0.348756)
               

               
               cov (0.264306)
               

               
               eje (0.0988338)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (2.00508)
               

               
               med (0.348756)
               

               
               cov (0.264306)
               

               
               eje (0.0988338)

	250-722, gnl\|bosTau2\|chr16 (2463944-2464414)
	250-722, gnl\|Hg17\|chr1 (200007885-200008335)
	250-722, gnl\|Mm7\|chr1 (133967492-133967036)