Non-Coding RNA Search

Ss1.1-Pig4-TMW8067K10.3

Sequence:


               
               GTTGTGTTGAATTCATTTATGACAAGAGCTCTCAACTATTCTTTATCAGGGGACTGAAGT
TAGCAGGGCCCTCTTTGGCACACGAATAGAAGTGAGGCCCATAAGGAAGTGTTGGAGATA
GATAATGGTTCCACGCAGCAGAAGTACTCATTATGTCCTCTTAAATTCTGCCGCTGTGAT
TGCTAGAGCTTTTCCTCAAGCCGTCTTTGTTGGAGTATATTTTGGAGAAGTGCGTAGCAA
GGGAAATCTGGGATTTATTTAAATGTTTCATTTCTTTGGTGAATTACATTTTAAAAATAT
TCTGTAAAATCATTTTCCTCCCAGTGACCACATGAGAAAATTACTGAAGGAGTTTTATAA
CATTTCTCAGAATGTTTTCAACATGCATCAGAAAGCAAACTCCCTCTTTAGACACTGTCA
GCATCAAACTTTAGGCTGCCCCCCCATGACGTTTGGTAACACGTGAATGGAGAGTGAATC
CTCTGCTTTAACGTGCCTTCCTGGGGACACAGAGCCGGGTCTATATTCAAAATGATTCAT
GTTAGTGGTTGATGGTTGATATATTTCCGATATGAATACTTTTGTGATTCAGAGACACCA
GTGGCCCCTCAAATGTACTGAGAATCCAATAAGTTCTAGGTTTCTTCTTTGGAAGTCAGT
GTGCAAGATCTTAACAGTGAATTTATGATTGTGATGATAGGTTTGTTCATCTACATGTAT
TCGTGTCATTGATCTTCTCAAGAACAAAGTCTTAGATATTGGCAAGTGAGACCTAAGCAG
AAGACTGAAATCTGCTTCCTGGATAAAAGCTGATGCAGTCATCCTTTCTCATTAAAATTC
ACCACAGCTAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGTGTTGAATTCATTTATGACAAGAGCTCTCAACTATTCTTTATCAGGGGACTGAAGT
TAGCAGGGCCCTCTTTGGCACACGAATAGAAGTGAGGCCCATAAGGAAGTGTTGGAGATA
GATAATGGTTCCACGCAGCAGAAGTACTCATTATGTCCTCTTAAATTCTGCCGCTGTGAT
TGCTAGAGCTTTTCCTCAAGCCGTCTTTGTTGGAGTATATTTTGGAGAAGTGCGTAGCAA
GGGAAATCTGGGATTTATTTAAATGTTTCATTTCTTTGGTGAATTACATTTTAAAAATAT
TCTGTAAAATCATTTTCCTCCCAGTGACCACATGAGAAAATTACTGAAGGAGTTTTATAA
CATTTCTCAGAATGTTTTCAACATGCATCAGAAAGCAAACTCCCTCTTTAGACACTGTCA
GCATCAAACTTTAGGCTGCCCCCCCATGACGTTTGGTAACACGTGAATGGAGAGTGAATC
CTCTGCTTTAACGTGCCTTCCTGGGGACACAGAGCCGGGTCTATATTCAAAATGATTCAT
GTTAGTGGTTGATGGTTGATATATTTCCGATATGAATACTTTTGTGATTCAGAGACACCA
GTGGCCCCTCAAATGTACTGAGAATCCAATAAGTTCTAGGTTTCTTCTTTGGAAGTCAGT
GTGCAAGATCTTAACAGTGAATTTATGATTGTGATGATAGGTTTGTTCATCTACATGTAT
TCGTGTCATTGATCTTCTCAAGAACAAAGTCTTAGATATTGGCAAGTGAGACCTAAGCAG
AAGACTGAAATCTGCTTCCTGGATAAAAGCTGATGCAGTCATCCTTTCTCATTAAAATTC
ACCACAGCTAGA

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               1-456, gnl|bosTau2|chr20 (17327110-17327590)
               

               
               1-456, gnl|canFam2|chr4 (67470960-67470554)
               

               
               1-456, gnl|dasNov1|scaffold_1312 (8304-8713)
               

               
               1-456, gnl|echTel1|scaffold_280200 (48191-48606)
               

               
               1-456, gnl|hg17|chr5 (50007902-50008321)
               

               
               1-456, gnl|Hg17|chr5 (50008013-50008492)
               

               
               1-456, gnl|loxAfr1|scaffold_31164 (4062-4448)
               

               
               1-456, gnl|mm7|chr13 (114222828-114222449)
               

               
               1-456, gnl|monDom2|scaffold_27 (12169017-12169451)
               

               
               1-456, gnl|oryCun1|scaffold_207746 (23975-24380)
               

               
               1-456, gnl|panTro1|chr4 (66309071-66308664)
               

               
               1-456, gnl|rheMac2|chr6 (48220565-48220983)
               

               
               1-456, gnl|rn3|chr2 (48772118-48771729)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-456, gnl|bosTau2|chr20 (17327110-17327590)
               

               
               1-456, gnl|canFam2|chr4 (67470960-67470554)
               

               
               1-456, gnl|dasNov1|scaffold_1312 (8304-8713)
               

               
               1-456, gnl|echTel1|scaffold_280200 (48191-48606)
               

               
               1-456, gnl|hg17|chr5 (50007902-50008321)
               

               
               1-456, gnl|Hg17|chr5 (50008013-50008492)
               

               
               1-456, gnl|loxAfr1|scaffold_31164 (4062-4448)
               

               
               1-456, gnl|mm7|chr13 (114222828-114222449)
               

               
               1-456, gnl|monDom2|scaffold_27 (12169017-12169451)
               

               
               1-456, gnl|oryCun1|scaffold_207746 (23975-24380)
               

               
               1-456, gnl|panTro1|chr4 (66309071-66308664)
               

               
               1-456, gnl|rheMac2|chr6 (48220565-48220983)
               

               
               1-456, gnl|rn3|chr2 (48772118-48771729)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               spl (0.286369)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.286369)

	1-456, gnl\|bosTau2\|chr20 (17327110-17327590)
	1-456, gnl\|canFam2\|chr4 (67470960-67470554)
	1-456, gnl\|dasNov1\|scaffold_1312 (8304-8713)
	1-456, gnl\|echTel1\|scaffold_280200 (48191-48606)
	1-456, gnl\|hg17\|chr5 (50007902-50008321)
	1-456, gnl\|Hg17\|chr5 (50008013-50008492)
	1-456, gnl\|loxAfr1\|scaffold_31164 (4062-4448)
	1-456, gnl\|mm7\|chr13 (114222828-114222449)
	1-456, gnl\|monDom2\|scaffold_27 (12169017-12169451)
	1-456, gnl\|oryCun1\|scaffold_207746 (23975-24380)
	1-456, gnl\|panTro1\|chr4 (66309071-66308664)
	1-456, gnl\|rheMac2\|chr6 (48220565-48220983)
	1-456, gnl\|rn3\|chr2 (48772118-48771729)