Non-Coding RNA Search

Ss1.1-Pig4-TMW8067K15.3

Sequence:


               
               TGTTAGTACACCCTCAATTTATGTTGATCCTTAAATATGATTAGGAGATATTTTTCTCTG
TTTACTAGATTTAAGTCAAAACTGATATAATCGTGTTTTTCCAAACAACATTATTTGTTG
GCCTGCAAAGTCGATCTCATACATTTCATTTAATGTTACATCACATTCAGTTTAATCTGC
TCAAAATGCAGATTAAAAGCAACACTTATGATGGTCTGTATCCATCAGCAGATTTAATGC
TTTTCATTATTTTACTGTAAAGGCAAAGAATGCAAAAGTTGACTTAAAATGAATTGGTAT
TGCTCTTTTTAACTTCACTTGATGTATTGCTCATAATATCATTTGCTTGAGATTCACTGT
TGATGTATAGGAGAGTAAATCTATGTGTGTGTCATTTAAAAACAAAAACAAAAACACCGC
AAACTTCACCATCCTGCCTCTTTGGTGTGGCCTGTTCTGGACTGACTTCAATCCTCTCAG
AACACCTATGGAGGCAGGTCAAACCTGAAGCTGCTGCAGGATCCCAGGGACGTTAGCTGG
GTTAATTACCACTGTCCCTTTCAAATCTGTTTTATGGCATCCTGCCCATTAAGAACTCAG
AGTCTGATTCAGATGAACTTAATGAATATTTACACCTCAAAGTCATTTCAGCATAGGGTT
CAATTAATCTCTCCTCAGGCTTCACAGGTGCCAGTATGTGCAGGTACCTCACTGCTGGGG
TCATTTATTCACCAGCCTTCCAGCCTTCAGGAGCATTTCAAGCTTCTGTGCTGGAAATAT
AACAAAAGGCTGCCTGAAGCCTGAGTTGAGTTTCTGCGGCAGTGCAAAGGTTGATGGCAG
GAACAGCGGGGCACTGCAGCATAATTGTTGATTTGCACATCTATTAGGATCCTTAAATAT
TCATTACTTAGCATTAAATTAACATTTTGTGTAGGTTGGAGAGGCTCTTTAATACAATTC
TTCGGACCTCAGAAATGGCGGAAGGTCAAATGTGATGGTGATGCTCCAAGTGAAAAACCA
GGTTGGGTCCGTTTAGACTTAAAAGTAGGTAGAATCTCCTTTGCCAGGAAGTAAGTGATG
ATCTTCAAAACAAAAAACACCCACTTTTAAGGTCGAGAAGGGGGGAAGAAATGAGTAGAG
GAGGAACTATTCCTTTCTAGCATTTCAACTTAGGTAATTTAGATCAACGCTTTATGAGTT
CGACCCTTTGGGGGTCAGGTGTTTAATTGACACAATGGCAGACGTCCAAGGAGTTGACCA
GTTTGGGATGAATTGTTCTGCTCTAATTGGTCTGGTCTGATTGCCTTACCAGCCAAAGGA
TCATATTAACTGTATAAATGAATTCATGGCTTGATGGTTACCTGATCAGTTGTACAGATC
TGAATTTAAGGACATTTCCTTTTAATGGGAATAGAAATAGTTGATCCAATAAAAAGTCTG
AAAAGAAAAAAACCTTTCCGGCATAAATAAAAGCTGGCATTTTTGATCCGATTTATATAT
TTGGCAGTTCGAGGATTTTTAGTTCCCTTCATTCTGGATCCGTGTTTATGATATAGCCCT
TTCCCTAGTAAATTCAGTTAGAAGGCCTTCCTTAATAATGACTAAGTATTATTATATCTT
ACTCAAAATATGATTTTGTCATATCAATACAAATATAAAACAAGATTGAGCCTTAATAAC
CATGTAACAAAGTATTTTGTAGATCGTGTATTGATTTTTTAAAATTAAAGATGTATTTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTAGTACACCCTCAATTTATGTTGATCCTTAAATATGATTAGGAGATATTTTTCTCTG
TTTACTAGATTTAAGTCAAAACTGATATAATCGTGTTTTTCCAAACAACATTATTTGTTG
GCCTGCAAAGTCGATCTCATACATTTCATTTAATGTTACATCACATTCAGTTTAATCTGC
TCAAAATGCAGATTAAAAGCAACACTTATGATGGTCTGTATCCATCAGCAGATTTAATGC
TTTTCATTATTTTACTGTAAAGGCAAAGAATGCAAAAGTTGACTTAAAATGAATTGGTAT
TGCTCTTTTTAACTTCACTTGATGTATTGCTCATAATATCATTTGCTTGAGATTCACTGT
TGATGTATAGGAGAGTAAATCTATGTGTGTGTCATTTAAAAACAAAAACAAAAACACCGC
AAACTTCACCATCCTGCCTCTTTGGTGTGGCCTGTTCTGGACTGACTTCAATCCTCTCAG
AACACCTATGGAGGCAGGTCAAACCTGAAGCTGCTGCAGGATCCCAGGGACGTTAGCTGG
GTTAATTACCACTGTCCCTTTCAAATCTGTTTTATGGCATCCTGCCCATTAAGAACTCAG
AGTCTGATTCAGATGAACTTAATGAATATTTACACCTCAAAGTCATTTCAGCATAGGGTT
CAATTAATCTCTCCTCAGGCTTCACAGGTGCCAGTATGTGCAGGTACCTCACTGCTGGGG
TCATTTATTCACCAGCCTTCCAGCCTTCAGGAGCATTTCAAGCTTCTGTGCTGGAAATAT
AACAAAAGGCTGCCTGAAGCCTGAGTTGAGTTTCTGCGGCAGTGCAAAGGTTGATGGCAG
GAACAGCGGGGCACTGCAGCATAATTGTTGATTTGCACATCTATTAGGATCCTTAAATAT
TCATTACTTAGCATTAAATTAACATTTTGTGTAGGTTGGAGAGGCTCTTTAATACAATTC
TTCGGACCTCAGAAATGGCGGAAGGTCAAATGTGATGGTGATGCTCCAAGTGAAAAACCA
GGTTGGGTCCGTTTAGACTTAAAAGTAGGTAGAATCTCCTTTGCCAGGAAGTAAGTGATG
ATCTTCAAAACAAAAAACACCCACTTTTAAGGTCGAGAAGGGGGGAAGAAATGAGTAGAG
GAGGAACTATTCCTTTCTAGCATTTCAACTTAGGTAATTTAGATCAACGCTTTATGAGTT
CGACCCTTTGGGGGTCAGGTGTTTAATTGACACAATGGCAGACGTCCAAGGAGTTGACCA
GTTTGGGATGAATTGTTCTGCTCTAATTGGTCTGGTCTGATTGCCTTACCAGCCAAAGGA
TCATATTAACTGTATAAATGAATTCATGGCTTGATGGTTACCTGATCAGTTGTACAGATC
TGAATTTAAGGACATTTCCTTTTAATGGGAATAGAAATAGTTGATCCAATAAAAAGTCTG
AAAAGAAAAAAACCTTTCCGGCATAAATAAAAGCTGGCATTTTTGATCCGATTTATATAT
TTGGCAGTTCGAGGATTTTTAGTTCCCTTCATTCTGGATCCGTGTTTATGATATAGCCCT
TTCCCTAGTAAATTCAGTTAGAAGGCCTTCCTTAATAATGACTAAGTATTATTATATCTT
ACTCAAAATATGATTTTGTCATATCAATACAAATATAAAACAAGATTGAGCCTTAATAAC
CATGTAACAAAGTATTTTGTAGATCGTGTATTGATTTTTTAAAATTAAAGATGTATTTCA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               692-805, - strand, RNAz p=0.586119
               

               
               1044-1150, - strand, RNAz p=0.906837

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               692-805, - strand, RNAz p=0.586119
               

               
               1044-1150, - strand, RNAz p=0.906837

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-1740, gnl|bosTau2|chr12 (12276679-12274937)
               

               
               3-1740, gnl|Hg17|chr2 (48735319-48737298)
               

               
               3-1740, gnl|Mm7|chr17 (86953024-86954745)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1740, gnl|bosTau2|chr12 (12276679-12274937)
               

               
               3-1740, gnl|Hg17|chr2 (48735319-48737298)
               

               
               3-1740, gnl|Mm7|chr17 (86953024-86954745)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

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               bla (0.621736)
               

               
               gul (0.355177)
               

               
               vin (0.332557)
               

               
               fce (0.271592)
               

               
               spc (0.226732)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               tra (0.123092)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.621736)
               

               
               gul (0.355177)
               

               
               vin (0.332557)
               

               
               fce (0.271592)
               

               
               spc (0.226732)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               tra (0.123092)

	692-805, - strand, RNAz p=0.586119
	1044-1150, - strand, RNAz p=0.906837

	3-1740, gnl\|bosTau2\|chr12 (12276679-12274937)
	3-1740, gnl\|Hg17\|chr2 (48735319-48737298)
	3-1740, gnl\|Mm7\|chr17 (86953024-86954745)

	bla (0.621736)
	gul (0.355177)
	vin (0.332557)
	fce (0.271592)
	spc (0.226732)
	cmu (0.186393)
	fbs (0.175346)
	fco (0.157208)
	isp (0.150376)
	bfe (0.149858)
	ski (0.146735)
	liv (0.146284)
	spl (0.143184)
	hlv (0.139256)
	ova (0.129132)
	ret (0.128733)
	ese (0.126502)
	tra (0.123092)