Non-Coding RNA Search

Ss1.1-Pig4-TMW8067K22.3

Sequence:


               
               GGTGGGGGGAGGGAGGCGGTTAGTGGGCTTTAGCGCCTTTTCTGGAGGCGGTAGATTTGA
AGCGCTTTAAAGAACCTGACCCCGGGAAGAGGAGACCATACTGGTGCAAGAGCAAAAGGA
TTGTATCAGTTGTCCTTGATTTTTCCCTATTTAAAGATTGAAGTATTGAACCATGGGAAT
AAAGGTTCAGCGTCCTCGATGTTTTTTTGACATCGCCATTAATAATCAACCTGCTGGAAG
AGTTGTCTTTGAATTATTTTCTGATGTGTGCCCTAAAACATGCGAGAACTTTCGTTGTCT
TTGTACAGGTGAAAAGGGGACAGGGAAATCAACTCAGAAGCCATTACATTATAAAAGTTG
TCTCTTTCACAGAGTTGTCAAAGATTTTATGGTTCAAGGTGGTGACTTCAGTGAAGGAAA
TGGACGAGGAGGGGAATCCATTTATGGAGGATTTTTTGAAGATGAGAGCTTTGCTGTTAA
ACACAATAAAGAATTTCTCTTATCAATGGCCAACAGAGGGAAGGATACAAATGGTTCGCA
GTTCTTCATAACAACAAAACCAACTCCTCATTTAGATGGGCATCATGTTGTTTTCGGGCA
AGTGATTTCTGGCCAAGAAGTTGTGAGAGAGATAGAAAACCAGAAAACAGATGCAGCTAG
CAAACCGTTTGCTGAGGTGCGGATACTCAGTTGTGGAGAGCTAATTCCCAAATCTAAAGC
TAAGAAAGAAGAAAAGAAAAGGCACAAATCCTCCTCCTCCTCCTCCTCATCATCCAGTGA
ATCAGATAGCTCAAGTGATTCTCAGTCATCTTCTGATTCTTCTGATTCTGAAAGTGCTTC
TGAGGAGAAATCAAAAAAGAGAAAGAAAAAACATAGGAAGAATTCTCGTAAACACAAGAA
AGAAAAGAAGAAGCGAAAGAAAAGCAAGAAAAGCGCATCTAGTGAAAGTGAGGCTGAAAA
TCTTGAAGCACAACCCCAGTCTACTGTCCGTCCAGAGGAGATCCCTCCAATACCTGAAAA
CAGATTCCTGATGAGAAAAAGTCCTCCGAAAGCTGATGAAAAAGAAAGGAAAAATAGGGA
GAGGGAGAGAGAAAGAGAGAGTAACCTACCTAACTCCCAGCCTGTTTCATACCAGAGGCG
ACTTTTAGTTACTAGGTCTGGCAGGAAAATTAAAGGAAGAGGACCAAGGCGTTATCGAAC
TCCTTCTAGATCCAGATCAAGGGATCGTTTCAGACGTAGTGAGACTCCTCCACATTGGAG
GCAAGAGATGCAGAGAGCTCAAAGAATGAGGGTATCAAGTGGTGAAAGATGGATCAAAGG
GGATAAGAGTGAGTTAAATGAAGTAAAAGAAAATCAAAGAAGCCCAGTTAGAGTAAAAGA
GAAAAAAATAACTGATCATAGGCATGTGTCTGAGAGTCCAAACAGAAAAACTGAAAAGGA
AAAGAAAGTTAAAGACCATAAATCTAATAGCAAAGAGAGAGACATCAGAAGAAATTCAGA
AAAAGATGATAAATATAAAAATAAGGTAAAGAAAAGGGCCAAATCGAAAAGTAGGAGTAA
GAGCAAAGAGAAATCCAAAAGTAAAGAAAGGGATACAAAGCATATTAGACATGAAGAAAA
GAGGATGAGGTCAAGGAGTAAAGAAAGGGATCATGAGAATGTTAAAGAAAAAGAAAAGGC
TGATTCTAAAGCAAAAGATCAGGAAAGGAGTAGAAGTAAAGAGAAGTCCAAACAGTTAGA
ATCCAAAAGTAATGAGCACGATCATAATAAAAGCAAGGACAAGGACAGACGTGCACAGTC
TAGGAGTAGAGAACGAGATGTAACTAAAGGCAAACACAGTTACAATAGCAGAACAAGGGA
ACGAAGCAGAAGTAGGGACAGGAGCAGAAGAGTGAGGTCTCGAAGTCATGACCGAGATCG
CAGCAGAAGCAAGGAGTATCATAGATACAGAGAGCAGGAGTACAGGAGAAGAGGAAGGTC
ACGGAGCCGAGAGAGAAGAGCAACACCAGGACGATCAAGAAGTAAAGATAGAAGGAGGAG
GAGGAGAGATTCGTGCCGAATTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGGGGGGAGGGAGGCGGTTAGTGGGCTTTAGCGCCTTTTCTGGAGGCGGTAGATTTGA
AGCGCTTTAAAGAACCTGACCCCGGGAAGAGGAGACCATACTGGTGCAAGAGCAAAAGGA
TTGTATCAGTTGTCCTTGATTTTTCCCTATTTAAAGATTGAAGTATTGAACCATGGGAAT
AAAGGTTCAGCGTCCTCGATGTTTTTTTGACATCGCCATTAATAATCAACCTGCTGGAAG
AGTTGTCTTTGAATTATTTTCTGATGTGTGCCCTAAAACATGCGAGAACTTTCGTTGTCT
TTGTACAGGTGAAAAGGGGACAGGGAAATCAACTCAGAAGCCATTACATTATAAAAGTTG
TCTCTTTCACAGAGTTGTCAAAGATTTTATGGTTCAAGGTGGTGACTTCAGTGAAGGAAA
TGGACGAGGAGGGGAATCCATTTATGGAGGATTTTTTGAAGATGAGAGCTTTGCTGTTAA
ACACAATAAAGAATTTCTCTTATCAATGGCCAACAGAGGGAAGGATACAAATGGTTCGCA
GTTCTTCATAACAACAAAACCAACTCCTCATTTAGATGGGCATCATGTTGTTTTCGGGCA
AGTGATTTCTGGCCAAGAAGTTGTGAGAGAGATAGAAAACCAGAAAACAGATGCAGCTAG
CAAACCGTTTGCTGAGGTGCGGATACTCAGTTGTGGAGAGCTAATTCCCAAATCTAAAGC
TAAGAAAGAAGAAAAGAAAAGGCACAAATCCTCCTCCTCCTCCTCCTCATCATCCAGTGA
ATCAGATAGCTCAAGTGATTCTCAGTCATCTTCTGATTCTTCTGATTCTGAAAGTGCTTC
TGAGGAGAAATCAAAAAAGAGAAAGAAAAAACATAGGAAGAATTCTCGTAAACACAAGAA
AGAAAAGAAGAAGCGAAAGAAAAGCAAGAAAAGCGCATCTAGTGAAAGTGAGGCTGAAAA
TCTTGAAGCACAACCCCAGTCTACTGTCCGTCCAGAGGAGATCCCTCCAATACCTGAAAA
CAGATTCCTGATGAGAAAAAGTCCTCCGAAAGCTGATGAAAAAGAAAGGAAAAATAGGGA
GAGGGAGAGAGAAAGAGAGAGTAACCTACCTAACTCCCAGCCTGTTTCATACCAGAGGCG
ACTTTTAGTTACTAGGTCTGGCAGGAAAATTAAAGGAAGAGGACCAAGGCGTTATCGAAC
TCCTTCTAGATCCAGATCAAGGGATCGTTTCAGACGTAGTGAGACTCCTCCACATTGGAG
GCAAGAGATGCAGAGAGCTCAAAGAATGAGGGTATCAAGTGGTGAAAGATGGATCAAAGG
GGATAAGAGTGAGTTAAATGAAGTAAAAGAAAATCAAAGAAGCCCAGTTAGAGTAAAAGA
GAAAAAAATAACTGATCATAGGCATGTGTCTGAGAGTCCAAACAGAAAAACTGAAAAGGA
AAAGAAAGTTAAAGACCATAAATCTAATAGCAAAGAGAGAGACATCAGAAGAAATTCAGA
AAAAGATGATAAATATAAAAATAAGGTAAAGAAAAGGGCCAAATCGAAAAGTAGGAGTAA
GAGCAAAGAGAAATCCAAAAGTAAAGAAAGGGATACAAAGCATATTAGACATGAAGAAAA
GAGGATGAGGTCAAGGAGTAAAGAAAGGGATCATGAGAATGTTAAAGAAAAAGAAAAGGC
TGATTCTAAAGCAAAAGATCAGGAAAGGAGTAGAAGTAAAGAGAAGTCCAAACAGTTAGA
ATCCAAAAGTAATGAGCACGATCATAATAAAAGCAAGGACAAGGACAGACGTGCACAGTC
TAGGAGTAGAGAACGAGATGTAACTAAAGGCAAACACAGTTACAATAGCAGAACAAGGGA
ACGAAGCAGAAGTAGGGACAGGAGCAGAAGAGTGAGGTCTCGAAGTCATGACCGAGATCG
CAGCAGAAGCAAGGAGTATCATAGATACAGAGAGCAGGAGTACAGGAGAAGAGGAAGGTC
ACGGAGCCGAGAGAGAAGAGCAACACCAGGACGATCAAGAAGTAAAGATAGAAGGAGGAG
GAGGAGAGATTCGTGCCGAATTCG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q6P432_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q6P432_HUMAN

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               715-913, - strand, RNAz p=0.960383

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               715-913, - strand, RNAz p=0.960383

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

Help | Less info


               
               610-1067, gnl|bosTau2|chr3 (43082493-43082079)
               

               
               610-1067, gnl|Hg17|chr5 (154851523-154853254)
               


               
               715-933, gnl|bosTau2|chr2 (18919495-18919713)
               

               
               715-933, gnl|Hg17|chr2 (170312786-170313004)
               

               
               715-933, gnl|Mm7|chr2 (69672031-69672242)
               


               
               1324-2046, gnl|bosTau2|chr2 (18923860-18924582)
               

               
               1324-2046, gnl|Hg17|chr2 (170318427-170319152)
               

               
               1324-2046, gnl|Mm7|chr2 (69679818-69680543)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               610-1067, gnl|bosTau2|chr3 (43082493-43082079)
               

               
               610-1067, gnl|Hg17|chr5 (154851523-154853254)
               


               
               715-933, gnl|bosTau2|chr2 (18919495-18919713)
               

               
               715-933, gnl|Hg17|chr2 (170312786-170313004)
               

               
               715-933, gnl|Mm7|chr2 (69672031-69672242)
               


               
               1324-2046, gnl|bosTau2|chr2 (18923860-18924582)
               

               
               1324-2046, gnl|Hg17|chr2 (170318427-170319152)
               

               
               1324-2046, gnl|Mm7|chr2 (69679818-69680543)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

Help | Less info


               
               pro (1.02407)
               

               
               sug (0.254582)
               

               
               bla (0.248694)
               

               
               tes (0.207814)
               

               
               cmu (0.186393)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (1.02407)
               

               
               sug (0.254582)
               

               
               bla (0.248694)
               

               
               tes (0.207814)
               

               
               cmu (0.186393)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	610-1067, gnl\|bosTau2\|chr3 (43082493-43082079)
	610-1067, gnl\|Hg17\|chr5 (154851523-154853254)

	715-933, gnl\|bosTau2\|chr2 (18919495-18919713)
	715-933, gnl\|Hg17\|chr2 (170312786-170313004)
	715-933, gnl\|Mm7\|chr2 (69672031-69672242)

	1324-2046, gnl\|bosTau2\|chr2 (18923860-18924582)
	1324-2046, gnl\|Hg17\|chr2 (170318427-170319152)
	1324-2046, gnl\|Mm7\|chr2 (69679818-69680543)

	pro (1.02407)
	sug (0.254582)
	bla (0.248694)
	tes (0.207814)
	cmu (0.186393)
	csk (0.140746)
	ste (0.135208)
	pla (0.133672)
	thg (0.126791)
	tra (0.123092)
	pgl (0.118483)
	jca (0.11396)
	eje (0.0988338)