Non-Coding RNA Search

Ss1.1-Pig4-TMW8067L15.3

Sequence:


               
               TCGCCCAGCGGCTCAGCCAAAGAGGCGGCCAGTGAACTGCAGAGCATCCAGAGACTGGTG
AGTGGGCTGGAGAGCCAGCGAGCCCTCTCCCCCGGCAGGGAGTCGCCCAAGTGAGGGGGC
TGCCCAGCTGCTCCGCTGCCACGCAGGCCTCCCGGGCTGCCTGCCCCTGCTGCTTGGGAC
GCATACAGCACAGAGTGGGTATTTATTTAAATAAAGGAGAGAAAGCGGGCTGCAGCAGCC
GGAATGAAGCCCGGACCAGCCAGCCGGGGCCTGGGACACTTTCCTGGGCCCCACAAGGAA
TCCGGCTGCGGGGAACAGAGTCGCTTTGGAGCCACTGGATTCTGTCCAGGTCTGCTCCAG
TGTCAAGGTGTCATTGGTGGGGGCCTCTCCGGGGTCCTCCAGTGCTGTGGGAGGCCTCGT
TCCCCGCCCAGCCAGGGGCTGGCTCTTTGGGAGCCAGAAGGTGCAGGGGTCTGGGGTGGG
AGCTTCAAGGGAGCCCCAGAGCCCCAGCCGCGGGCCTGGACCGCCGGAGAATCTGGGGCG
AAGGATGCTGGGGTCAGTGAAGATTGAAGTCAGTGTAGACCTGAGCTGAGGGACCTATTC
TTTTAGTCCTCCCACCTCTTCCCCCCAGACAGGCGCCCCTCCTACCCCTGGGTCAGCGAA
GGGAGTGGCACTTCTGCCTTGAGTCCCCAGGGGAAAAAAAAAAAAAAAGATATTTATGAA
ATAAATGGTAATTTGTGTAAATAAGCTTTAAGGTTCCCAGAATATGCAAATTGGTATTAA
TTTATTCGAAGGTGTACATTGCTATGTACATAATATTTAGAGAGTAACTCATAGCATTTA
ATTTTTTTTTCATTTTACATGAGCATCTATATTGTACAGGGCTGGGGGAGTGGTCCTTGG
CTGCGGAAGAGGGCCCGAGGAGGCGCTCCCACCCCGCCAGCCCCTTGGCCCCTGCGCCCG
GGCTTTGCTCGCCCGGCCCGCGGGCTCCACCTCAGGTTTTCACTTTTCGCCTCGGAGCGA
GCGACAAAAACGCGAGAAAACAATAAAACGCTGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGCCCAGCGGCTCAGCCAAAGAGGCGGCCAGTGAACTGCAGAGCATCCAGAGACTGGTG
AGTGGGCTGGAGAGCCAGCGAGCCCTCTCCCCCGGCAGGGAGTCGCCCAAGTGAGGGGGC
TGCCCAGCTGCTCCGCTGCCACGCAGGCCTCCCGGGCTGCCTGCCCCTGCTGCTTGGGAC
GCATACAGCACAGAGTGGGTATTTATTTAAATAAAGGAGAGAAAGCGGGCTGCAGCAGCC
GGAATGAAGCCCGGACCAGCCAGCCGGGGCCTGGGACACTTTCCTGGGCCCCACAAGGAA
TCCGGCTGCGGGGAACAGAGTCGCTTTGGAGCCACTGGATTCTGTCCAGGTCTGCTCCAG
TGTCAAGGTGTCATTGGTGGGGGCCTCTCCGGGGTCCTCCAGTGCTGTGGGAGGCCTCGT
TCCCCGCCCAGCCAGGGGCTGGCTCTTTGGGAGCCAGAAGGTGCAGGGGTCTGGGGTGGG
AGCTTCAAGGGAGCCCCAGAGCCCCAGCCGCGGGCCTGGACCGCCGGAGAATCTGGGGCG
AAGGATGCTGGGGTCAGTGAAGATTGAAGTCAGTGTAGACCTGAGCTGAGGGACCTATTC
TTTTAGTCCTCCCACCTCTTCCCCCCAGACAGGCGCCCCTCCTACCCCTGGGTCAGCGAA
GGGAGTGGCACTTCTGCCTTGAGTCCCCAGGGGAAAAAAAAAAAAAAAGATATTTATGAA
ATAAATGGTAATTTGTGTAAATAAGCTTTAAGGTTCCCAGAATATGCAAATTGGTATTAA
TTTATTCGAAGGTGTACATTGCTATGTACATAATATTTAGAGAGTAACTCATAGCATTTA
ATTTTTTTTTCATTTTACATGAGCATCTATATTGTACAGGGCTGGGGGAGTGGTCCTTGG
CTGCGGAAGAGGGCCCGAGGAGGCGCTCCCACCCCGCCAGCCCCTTGGCCCCTGCGCCCG
GGCTTTGCTCGCCCGGCCCGCGGGCTCCACCTCAGGTTTTCACTTTTCGCCTCGGAGCGA
GCGACAAAAACGCGAGAAAACAATAAAACGCTGCAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               213-369, - strand, RNAz p=0.915916
               

               
               601-750, - strand, RNAz p=0.976504

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               213-369, - strand, RNAz p=0.915916
               

               
               601-750, - strand, RNAz p=0.976504

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1056, gnl|bosTau2|chr19 (6232124-6231046)
               

               
               1-1056, gnl|Hg17|chr17 (56840536-56841603)
               

               
               1-1056, gnl|Mm7|chr11 (85910809-85911846)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1056, gnl|bosTau2|chr19 (6232124-6231046)
               

               
               1-1056, gnl|Hg17|chr17 (56840536-56841603)
               

               
               1-1056, gnl|Mm7|chr11 (85910809-85911846)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               pla (0.534688)
               

               
               eje (0.197668)
               

               
               csp (0.161186)
               

               
               ute (0.132784)
               

               
               eru (0.120048)
               

               
               med (0.116252)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.534688)
               

               
               eje (0.197668)
               

               
               csp (0.161186)
               

               
               ute (0.132784)
               

               
               eru (0.120048)
               

               
               med (0.116252)

	213-369, - strand, RNAz p=0.915916
	601-750, - strand, RNAz p=0.976504

	1-1056, gnl\|bosTau2\|chr19 (6232124-6231046)
	1-1056, gnl\|Hg17\|chr17 (56840536-56841603)
	1-1056, gnl\|Mm7\|chr11 (85910809-85911846)

	pla (0.534688)
	eje (0.197668)
	csp (0.161186)
	ute (0.132784)
	eru (0.120048)
	med (0.116252)