Ss1.1-Pig4-TMW8067M04.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTTACAATCTTATTTGAATCACAGTTCAGTGTTGGTGGAAATGAGCTGGTTTTTCAAGT CAAGACCCTGTCCCTCCCAGTGGTGGTGATTGTTCACGGCAGCCAGGACAACAACGCGAC GGCCACCGTCCTCTGGGACAATGCTTTCGCAGAGCCCGGCAGGGTGCCCTTTGCGGTGCC TGACAAAGTCCTGTGGCCGCAGCTGTGCGAGGCGCTCAACATGAAATTCAAGGCCGAGGT GCAGAGCAACCGGGGCCTGACCAAGGAGAACCTCGTGTTCCTGGCGCAGAAGCTCTTCAA CAGCAGCAGCAGCCATCTGGAGGACTACAGCGGCATGTCTGTGTCCTGGTCCCAGTTCAA CAGGGAAAATTTACCAGGACGGAATTACACTTTCTGGCAGTGGTTTGATGGCGTGATGGA AGTGTTAAAAAAACATCTCAAGCCTCATTGGAACGATGGGGCTATTTTGGGTTTCGTGAA CAAGCAACAGGCCCATGACCTACTCATTAACAAGCCCGACGGGACTTTCCTGCTGAGGTT CAGTGACTCTGAAATTGGTGGCATCACCATTGCTTGGAAGTTTGATTCTCAGGAAAGAAT GTTTTGGAATCTGATGCCTTTTACCACCAGAGACTTCTCTATCCGGTCCCTGGCAGACCG CTTGGGAGACCTGAATTACCTTATCTACGTGTTTCCTGATCGGCCAAAGGATGAAGTGTA CTCCAAATATTACACCCCAGTTCCATGCGAGCCTGCCACCGCTAAAGCAGTGGACGGATA CGTGAAGCCACAGATCAAGCAAGTGGTCCCTGAGTTTGTGAGCGCCTCTTCAGACTCTGC CGGGGGCAATGCCACCTACATGGACCAGGCCCCCTCCCCAGCCGTGTGCCCCCAGGCTCA TTACAGCATATACCCACAGAACCCCGACCCCGTCCTTGACAACGATGGGGACTTTGATCT GGACGACACGATGGACGTGGCGCGTCGTGTGGAGGAGCTCTTGGGCCGACCTATGGACAG TCAGTGGATCCCTCACGCGCAGTCGTGACCCCCTGTCGCCATCTTCCGCTTCTTCGTCCT CGCCAGAGGAGTTATACTTGTGGATGTTTTAATTCCATGAATCGCTTCTCTTTGGAAACA ATACTCATAATGTGAAGTGTTAATACTAGTTGTGACTTTAGTGTTTCTGTGCATGGTGGC ACCAGTGAAGGGAGTGTGAGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGGCGCGC GATTGCACGTTGTGCTCTTTCTCCCCCCTTGCTGTCCAGAGTGTAGCTGCAGCACTGGGG CCACAAACAGAGGCTGTGGTGGTTTCAGCCTTGTGCAAAAAGGCAGTTAGTTCCATAAAC CCTGGAACGTGGCCATGTGTCTTGGAGGTGGCTGAACTTTGACACATGGCTGTTCAGCTA AGAGAGGACAAAGGCAGGTGAGGGCACCTCCTTTCTGGTGAGTCCTTGTCACTGTGTCTA CCACGCCATTGATACGCAACCACGATTGTCTCTGCTTTTCTTCTGAAACCTGGAAACTGC CTTTTGACAAAGAAAGCCAGCCCTCCCTCCTTCCCGCTCCCTGACCGCCACTTTCCTGGG TAGGGATGGATAAAGGGGCACAGAGAGCAATCACTGGGGAAGGGAAGTGATGGGTTTTCT GATGGGTGTAGCCTTTTAAATAACACAGCCCAGCTCAATGTTCTCTTGCTCCCCACCCCC GGCTCCCTCCCACCCGTGGAATTGCCACTTGGTTCCTATGTGTGTACACCTGTGCAGACA CATCTGATGAAGCCGAGGAAAGAAAAGAGGGCCACAGAACCAAAGCTTACAGTGTCCTTT GTGTTGCGCCCAGGGTGGACCGCCCAGCCTGGCCCGGCTCACGGGCGCTGAGAGTGTTGC CTCGTTACTGGGAGCTGCCGTCCAGGTTGCCCAGCCTTCCTCTGCACTGGGGGAGCCACC AGCAAGGCTTTCCAAAGGCTTGTCAATAATGGCTTTTTGCAAGTGTTAAATGGTGTTTTT GTTTCGAAATTGGGACTTGTTTTCCCCTTCTCACCCTGATTTGATAGTAGAATTCTTTCT TCCTGCATCAGGTCAGGTGCCATTGACACGAAGGTCATGTCACCTCTTTTCCCTTCACTG TTTGCACAATGCCTTGGGGAGTGAGTGGCAGGAATGTGGGCTGAACCCAGGGCCAGCATG CTCAGGAGGCGTGTCGCCCACCTGGCGCAGGGTGCTGGGTGTCAGCGTCAGTCATTTGGG GAAATGCAGCCAGCAGGTTTGCTGGGAAGCTTGGTAAGCTGCAAAAAATGAAAAAAAAAA AAAAAAGAAAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTTACAATCTTATTTGAATCACAGTTCAGTGTTGGTGGAAATGAGCTGGTTTTTCAAGT CAAGACCCTGTCCCTCCCAGTGGTGGTGATTGTTCACGGCAGCCAGGACAACAACGCGAC GGCCACCGTCCTCTGGGACAATGCTTTCGCAGAGCCCGGCAGGGTGCCCTTTGCGGTGCC TGACAAAGTCCTGTGGCCGCAGCTGTGCGAGGCGCTCAACATGAAATTCAAGGCCGAGGT GCAGAGCAACCGGGGCCTGACCAAGGAGAACCTCGTGTTCCTGGCGCAGAAGCTCTTCAA CAGCAGCAGCAGCCATCTGGAGGACTACAGCGGCATGTCTGTGTCCTGGTCCCAGTTCAA CAGGGAAAATTTACCAGGACGGAATTACACTTTCTGGCAGTGGTTTGATGGCGTGATGGA AGTGTTAAAAAAACATCTCAAGCCTCATTGGAACGATGGGGCTATTTTGGGTTTCGTGAA CAAGCAACAGGCCCATGACCTACTCATTAACAAGCCCGACGGGACTTTCCTGCTGAGGTT CAGTGACTCTGAAATTGGTGGCATCACCATTGCTTGGAAGTTTGATTCTCAGGAAAGAAT GTTTTGGAATCTGATGCCTTTTACCACCAGAGACTTCTCTATCCGGTCCCTGGCAGACCG CTTGGGAGACCTGAATTACCTTATCTACGTGTTTCCTGATCGGCCAAAGGATGAAGTGTA CTCCAAATATTACACCCCAGTTCCATGCGAGCCTGCCACCGCTAAAGCAGTGGACGGATA CGTGAAGCCACAGATCAAGCAAGTGGTCCCTGAGTTTGTGAGCGCCTCTTCAGACTCTGC CGGGGGCAATGCCACCTACATGGACCAGGCCCCCTCCCCAGCCGTGTGCCCCCAGGCTCA TTACAGCATATACCCACAGAACCCCGACCCCGTCCTTGACAACGATGGGGACTTTGATCT GGACGACACGATGGACGTGGCGCGTCGTGTGGAGGAGCTCTTGGGCCGACCTATGGACAG TCAGTGGATCCCTCACGCGCAGTCGTGACCCCCTGTCGCCATCTTCCGCTTCTTCGTCCT CGCCAGAGGAGTTATACTTGTGGATGTTTTAATTCCATGAATCGCTTCTCTTTGGAAACA ATACTCATAATGTGAAGTGTTAATACTAGTTGTGACTTTAGTGTTTCTGTGCATGGTGGC ACCAGTGAAGGGAGTGTGAGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGGCGCGC GATTGCACGTTGTGCTCTTTCTCCCCCCTTGCTGTCCAGAGTGTAGCTGCAGCACTGGGG CCACAAACAGAGGCTGTGGTGGTTTCAGCCTTGTGCAAAAAGGCAGTTAGTTCCATAAAC CCTGGAACGTGGCCATGTGTCTTGGAGGTGGCTGAACTTTGACACATGGCTGTTCAGCTA AGAGAGGACAAAGGCAGGTGAGGGCACCTCCTTTCTGGTGAGTCCTTGTCACTGTGTCTA CCACGCCATTGATACGCAACCACGATTGTCTCTGCTTTTCTTCTGAAACCTGGAAACTGC CTTTTGACAAAGAAAGCCAGCCCTCCCTCCTTCCCGCTCCCTGACCGCCACTTTCCTGGG TAGGGATGGATAAAGGGGCACAGAGAGCAATCACTGGGGAAGGGAAGTGATGGGTTTTCT GATGGGTGTAGCCTTTTAAATAACACAGCCCAGCTCAATGTTCTCTTGCTCCCCACCCCC GGCTCCCTCCCACCCGTGGAATTGCCACTTGGTTCCTATGTGTGTACACCTGTGCAGACA CATCTGATGAAGCCGAGGAAAGAAAAGAGGGCCACAGAACCAAAGCTTACAGTGTCCTTT GTGTTGCGCCCAGGGTGGACCGCCCAGCCTGGCCCGGCTCACGGGCGCTGAGAGTGTTGC CTCGTTACTGGGAGCTGCCGTCCAGGTTGCCCAGCCTTCCTCTGCACTGGGGGAGCCACC AGCAAGGCTTTCCAAAGGCTTGTCAATAATGGCTTTTTGCAAGTGTTAAATGGTGTTTTT GTTTCGAAATTGGGACTTGTTTTCCCCTTCTCACCCTGATTTGATAGTAGAATTCTTTCT TCCTGCATCAGGTCAGGTGCCATTGACACGAAGGTCATGTCACCTCTTTTCCCTTCACTG TTTGCACAATGCCTTGGGGAGTGAGTGGCAGGAATGTGGGCTGAACCCAGGGCCAGCATG CTCAGGAGGCGTGTCGCCCACCTGGCGCAGGGTGCTGGGTGTCAGCGTCAGTCATTTGGG GAAATGCAGCCAGCAGGTTTGCTGGGAAGCTTGGTAAGCTGCAAAAAATGAAAAAAAAAA AAAAAAGAAAAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 1300-1498, - strand, RNAz p=0.991465 | |
| 1574-1689, - strand, RNAz p=0.952047 | |
| 2168-2284, - strand, RNAz p=0.646354 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1300-1498, - strand, RNAz p=0.991465 | |
| 1574-1689, - strand, RNAz p=0.952047 | |
| 2168-2284, - strand, RNAz p=0.646354 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 158-368, gnl|bosTau2|chr19 (36802504-36802714) | |
| 158-368, gnl|canFam2|chr9 (23938935-23938706) | |
| 158-368, gnl|danRer3|chr23 (33925046-33925271) | |
| 158-368, gnl|dasNov1|scaffold_7933 (98-323) | |
| 158-368, gnl|echTel1|scaffold_234875 (12650-12871) | |
| 158-368, gnl|fr1|chrUn (96837576-96837348) | |
| 158-368, gnl|galGal2|chr27_random (295706-295935) | |
| 158-368, gnl|hg17|chr17 (37711768-37711997) | |
| 158-368, gnl|Hg17|chr17 (37711785-37711995) | |
| 158-368, gnl|loxAfr1|scaffold_2644 (93411-93632) | |
| 158-368, gnl|mm7|chr11 (100988630-100988862) | |
| 158-368, gnl|Mm7|chr11 (100988650-100988860) | |
| 158-368, gnl|monDom2|scaffold_18 (52658938-52659167) | |
| 158-368, gnl|oryCun1|scaffold_167308 (6062-6291) | |
| 158-368, gnl|panTro1|chr19 (40915201-40915430) | |
| 158-368, gnl|rheMac2|chr16 (52418232-52418460) | |
| 158-368, gnl|rn3|chr10 (89828370-89828599) | |
| 158-368, gnl|tetNig1|chr3 (12649001-12649229) | |
| 158-368, gnl|xenTro1|scaffold_1822 (20150-19921) | |
| 582-765, gnl|bosTau2|chr19 (36718283-36718100) | |
| 582-765, gnl|Hg17|chr17 (37613281-37613098) | |
| 582-765, gnl|Mm7|chr11 (100896427-100896245) | |
| 814-921, gnl|bosTau2|chr19 (36714174-36714067) | |
| 814-921, gnl|canFam2|chr9 (24032272-24032145) | |
| 814-921, gnl|dasNov1|scaffold_10064 (40669-40542) | |
| 814-921, gnl|fr1|chrUn (96835238-96835365) | |
| 814-921, gnl|galGal2|chr27_random (297598-297473) | |
| 814-921, gnl|hg17|chr17 (37607879-37608006) | |
| 814-921, gnl|Hg17|chr17 (37607991-37607884) | |
| 814-921, gnl|loxAfr1|scaffold_2644 (16169-16297) | |
| 814-921, gnl|mm7|chr11 (100892706-100892831) | |
| 814-921, gnl|Mm7|chr11 (100892815-100892711) | |
| 814-921, gnl|monDom2|scaffold_18 (52567195-52567324) | |
| 814-921, gnl|oryCun1|scaffold_167308 (13384-13260) | |
| 814-921, gnl|panTro1|chr19 (40810463-40810590) | |
| 814-921, gnl|rheMac2|chr16 (52310493-52310620) | |
| 814-921, gnl|rn3|chr10 (89731805-89731930) | |
| 814-921, gnl|tetNig1|chr3 (12651455-12651329) | |
| 814-921, gnl|xenTro1|scaffold_1822 (14230-14348) | |
| 922-2344, gnl|bosTau2|chr19 (36713554-36712145) | |
| 922-2344, gnl|Hg17|chr17 (37607408-37606003) | |
| 922-2344, gnl|Mm7|chr11 (100892261-100890866) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 158-368, gnl|bosTau2|chr19 (36802504-36802714) | |
| 158-368, gnl|canFam2|chr9 (23938935-23938706) | |
| 158-368, gnl|danRer3|chr23 (33925046-33925271) | |
| 158-368, gnl|dasNov1|scaffold_7933 (98-323) | |
| 158-368, gnl|echTel1|scaffold_234875 (12650-12871) | |
| 158-368, gnl|fr1|chrUn (96837576-96837348) | |
| 158-368, gnl|galGal2|chr27_random (295706-295935) | |
| 158-368, gnl|hg17|chr17 (37711768-37711997) | |
| 158-368, gnl|Hg17|chr17 (37711785-37711995) | |
| 158-368, gnl|loxAfr1|scaffold_2644 (93411-93632) | |
| 158-368, gnl|mm7|chr11 (100988630-100988862) | |
| 158-368, gnl|Mm7|chr11 (100988650-100988860) | |
| 158-368, gnl|monDom2|scaffold_18 (52658938-52659167) | |
| 158-368, gnl|oryCun1|scaffold_167308 (6062-6291) | |
| 158-368, gnl|panTro1|chr19 (40915201-40915430) | |
| 158-368, gnl|rheMac2|chr16 (52418232-52418460) | |
| 158-368, gnl|rn3|chr10 (89828370-89828599) | |
| 158-368, gnl|tetNig1|chr3 (12649001-12649229) | |
| 158-368, gnl|xenTro1|scaffold_1822 (20150-19921) | |
| 582-765, gnl|bosTau2|chr19 (36718283-36718100) | |
| 582-765, gnl|Hg17|chr17 (37613281-37613098) | |
| 582-765, gnl|Mm7|chr11 (100896427-100896245) | |
| 814-921, gnl|bosTau2|chr19 (36714174-36714067) | |
| 814-921, gnl|canFam2|chr9 (24032272-24032145) | |
| 814-921, gnl|dasNov1|scaffold_10064 (40669-40542) | |
| 814-921, gnl|fr1|chrUn (96835238-96835365) | |
| 814-921, gnl|galGal2|chr27_random (297598-297473) | |
| 814-921, gnl|hg17|chr17 (37607879-37608006) | |
| 814-921, gnl|Hg17|chr17 (37607991-37607884) | |
| 814-921, gnl|loxAfr1|scaffold_2644 (16169-16297) | |
| 814-921, gnl|mm7|chr11 (100892706-100892831) | |
| 814-921, gnl|Mm7|chr11 (100892815-100892711) | |
| 814-921, gnl|monDom2|scaffold_18 (52567195-52567324) | |
| 814-921, gnl|oryCun1|scaffold_167308 (13384-13260) | |
| 814-921, gnl|panTro1|chr19 (40810463-40810590) | |
| 814-921, gnl|rheMac2|chr16 (52310493-52310620) | |
| 814-921, gnl|rn3|chr10 (89731805-89731930) | |
| 814-921, gnl|tetNig1|chr3 (12651455-12651329) | |
| 814-921, gnl|xenTro1|scaffold_1822 (14230-14348) | |
| 922-2344, gnl|bosTau2|chr19 (36713554-36712145) | |
| 922-2344, gnl|Hg17|chr17 (37607408-37606003) | |
| 922-2344, gnl|Mm7|chr11 (100892261-100890866) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| cga (0.279096) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| mcp (0.170648) | |
| cje (0.165235) | |
| cki (0.165235) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| cbl (0.114797) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cga (0.279096) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| mcp (0.170648) | |
| cje (0.165235) | |
| cki (0.165235) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| cbl (0.114797) |