Non-Coding RNA Search

Ss1.1-Pig4-TMW8067M11.3

Sequence:


               
               GAGGAGGTCTCGGCGGCGGGAAGATGTAAGTTGCGGGAATCCGACCCCATCCGAGCTTCG
GGGGCCGCTCGCCAAGGTCGGCGGGGTGCATCGTGAAGCCGGCCCTCTCCCCGGCCCCGC
GGTGGCAACGGCGGCCTAGCGGCGCGGTGTAGTTCTTAAGAAGAAAGAGTGGCCAGAGGA
GAGCTGAGTAGGAGGCGCCGAGGCCGCGGCCCGGAAGTGGTCGGGGCTGCGGCGGGCGGA
AGGGCGCCCTCGCTTCGTCTTCTCTGCGGCGGGCCCAGGGAGGCCCGCGGAATTCGGAGC
AGCCGGGAACTCGGCCTCCACCCTCAGGGTCCTCTCGCCGGGCAGGAGACCCAGGCCCGC
AACGTCAGGCCCTGCCCTGGAAGCTCTCGCGGCCCGGTCTCGGCGGCGGGAAGATGCTGC
ACTTTGGCGTAAATTGCAATCGATTAGGGATCGTTTCTCAGACTCAAGTTAGAAGTGAGA
GTTCAGATAAGTGAGGCCGCCATTGCTGCTTTGAACACCTCAGAAGGGGAGAATGGATTT
ATCAGGAGTGAAAAAGAAGAGCTTGCTAGGAGTCAAAGAAAATAATAAAAAGTCCAGCAC
TAGGGCTCCTTCTCCTACCAAACGCAAAGACCGCTCTGAGGAAAAGTCCAAGGACCGCTC
TAAAGATAAAGGGGCCACCAAGGAGTCGAGCGAGAAGGACCGTGGCAGGGATAAAACTCG
GAAGAGGCGCAGCGCTTCCAGTGGTAGCAGCAGCACCAGGTCTCGGTCCAGCTCTACCTC
CAGCTCAGGCTCCAGCACCAGCACGGGCTCCAGCAGTGGCTCCAGCTCGTCTTCGGCATC
GAGCCGCTCAGGAAGTTCCAGCACATCCCGCAGCTCCAGCTCCAGCAGTTCCTCTGGCTC
TCCGAGTCCTTCTCGGCGCAGACACGACAACAGGCGGCGTTCCCGTTCCAAGTCCAAACC
GCCCAAAAGAGATGAAAAGGAGAGGAAGCGGCGGAGCCCTTCCCCTAAACCCACCAAAGT
GCACATCGGGAGGCTCACCAGGAACGTGACCAAGGATCACATCATGGAGATATTCTCCAC
CTACGGCAAGATTAAGATGATCGACATGCCTGTGGAAAGGATGCACCCTCATCTCTCGAA
GGGCTACGCCTACGTGGAGTTCGAGAATCCAGATGAAGCCGAGAAGGCACTGAAGCACAT
GGACGGAGGACAAATCGATGGCCAGGAGATCACTGCCACTGCCGTGCTGGCCCCCTGGCC
TAGGCCACCCCCCAGGCGATTCAGCCCTCCCAGGAGAATGCTGCCACCACCTCCTATGTG
GCGCAGGTCACCCCCACGGATGAGGAGAAGGTCGCGGTCCCCCAGGCGCAGGTCCCCTGT
GCGCCGACGATCCCGCTCCCCTGGCCGCCGCCGCCACAGGAGCCGCTCCAGCTCCAACTC
CTCCCGATAAGCGGAGCCACGGAAGCTCTGCCCCTGAGACTTATGTCCCATCCAGCTCAC
TTTCATCAGTTGTCTAGCCAAAGGGGGATGGGTAGGAACGAAGGCTCTCACTCAGGGGCA
GGCTTGGGGATGTGCCTGGAAAGATGGTTTTCTGGCTAGAAAGATCCCACGTTTCTAGTT
CCTGGGAGTCAGTTTAGTGGCAGAGCCAGCAGGGATGAGCAGGGGGCGCCAGGTAGTGGC
ACAGCCCCAGCCTGGGAGCACGTTTTTTCCATTCCCTGGTTGACCCGGGGCCAGTCTGGT
GGCCTAGTCATGCCCTAACCTGTTGGCTTACAGGGTCCCTCAGGAAAGGATGTGCTTTTA
TGCAGCTGCCGTTGCTGTTAGTCTGGCCTCCCCCCTACTTGAATCCTCTCTGACCTCTAG
GATCAAATACCCTCTCTTACCTGCCCAGAATGGTTTTTACATATATTCTCGTGTGTGCGT
GCACACACAGCCCATGTCTTTCTCCGAAATGAAAGTGTCTGGTCGTAGCAGGTCACCACG
GAAAGTGCTTGTGTTGGTATTCCTGACGGCGATGCAGGATACCTTGGCAACCAACGTGTA
CATTGCTTTTTTGGCTTTTATTGTACAGTCAGTACTACAAATTTTCTGTTTTGAGTTTTG
TAACTTTGTAGCATTTTAGATAATGTTGTGTTTGTACTTTGTTGTGTAGAGTAAAAGGGC
TGTGTTGAATAAACCTTGAATAGTGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGAGGTCTCGGCGGCGGGAAGATGTAAGTTGCGGGAATCCGACCCCATCCGAGCTTCG
GGGGCCGCTCGCCAAGGTCGGCGGGGTGCATCGTGAAGCCGGCCCTCTCCCCGGCCCCGC
GGTGGCAACGGCGGCCTAGCGGCGCGGTGTAGTTCTTAAGAAGAAAGAGTGGCCAGAGGA
GAGCTGAGTAGGAGGCGCCGAGGCCGCGGCCCGGAAGTGGTCGGGGCTGCGGCGGGCGGA
AGGGCGCCCTCGCTTCGTCTTCTCTGCGGCGGGCCCAGGGAGGCCCGCGGAATTCGGAGC
AGCCGGGAACTCGGCCTCCACCCTCAGGGTCCTCTCGCCGGGCAGGAGACCCAGGCCCGC
AACGTCAGGCCCTGCCCTGGAAGCTCTCGCGGCCCGGTCTCGGCGGCGGGAAGATGCTGC
ACTTTGGCGTAAATTGCAATCGATTAGGGATCGTTTCTCAGACTCAAGTTAGAAGTGAGA
GTTCAGATAAGTGAGGCCGCCATTGCTGCTTTGAACACCTCAGAAGGGGAGAATGGATTT
ATCAGGAGTGAAAAAGAAGAGCTTGCTAGGAGTCAAAGAAAATAATAAAAAGTCCAGCAC
TAGGGCTCCTTCTCCTACCAAACGCAAAGACCGCTCTGAGGAAAAGTCCAAGGACCGCTC
TAAAGATAAAGGGGCCACCAAGGAGTCGAGCGAGAAGGACCGTGGCAGGGATAAAACTCG
GAAGAGGCGCAGCGCTTCCAGTGGTAGCAGCAGCACCAGGTCTCGGTCCAGCTCTACCTC
CAGCTCAGGCTCCAGCACCAGCACGGGCTCCAGCAGTGGCTCCAGCTCGTCTTCGGCATC
GAGCCGCTCAGGAAGTTCCAGCACATCCCGCAGCTCCAGCTCCAGCAGTTCCTCTGGCTC
TCCGAGTCCTTCTCGGCGCAGACACGACAACAGGCGGCGTTCCCGTTCCAAGTCCAAACC
GCCCAAAAGAGATGAAAAGGAGAGGAAGCGGCGGAGCCCTTCCCCTAAACCCACCAAAGT
GCACATCGGGAGGCTCACCAGGAACGTGACCAAGGATCACATCATGGAGATATTCTCCAC
CTACGGCAAGATTAAGATGATCGACATGCCTGTGGAAAGGATGCACCCTCATCTCTCGAA
GGGCTACGCCTACGTGGAGTTCGAGAATCCAGATGAAGCCGAGAAGGCACTGAAGCACAT
GGACGGAGGACAAATCGATGGCCAGGAGATCACTGCCACTGCCGTGCTGGCCCCCTGGCC
TAGGCCACCCCCCAGGCGATTCAGCCCTCCCAGGAGAATGCTGCCACCACCTCCTATGTG
GCGCAGGTCACCCCCACGGATGAGGAGAAGGTCGCGGTCCCCCAGGCGCAGGTCCCCTGT
GCGCCGACGATCCCGCTCCCCTGGCCGCCGCCGCCACAGGAGCCGCTCCAGCTCCAACTC
CTCCCGATAAGCGGAGCCACGGAAGCTCTGCCCCTGAGACTTATGTCCCATCCAGCTCAC
TTTCATCAGTTGTCTAGCCAAAGGGGGATGGGTAGGAACGAAGGCTCTCACTCAGGGGCA
GGCTTGGGGATGTGCCTGGAAAGATGGTTTTCTGGCTAGAAAGATCCCACGTTTCTAGTT
CCTGGGAGTCAGTTTAGTGGCAGAGCCAGCAGGGATGAGCAGGGGGCGCCAGGTAGTGGC
ACAGCCCCAGCCTGGGAGCACGTTTTTTCCATTCCCTGGTTGACCCGGGGCCAGTCTGGT
GGCCTAGTCATGCCCTAACCTGTTGGCTTACAGGGTCCCTCAGGAAAGGATGTGCTTTTA
TGCAGCTGCCGTTGCTGTTAGTCTGGCCTCCCCCCTACTTGAATCCTCTCTGACCTCTAG
GATCAAATACCCTCTCTTACCTGCCCAGAATGGTTTTTACATATATTCTCGTGTGTGCGT
GCACACACAGCCCATGTCTTTCTCCGAAATGAAAGTGTCTGGTCGTAGCAGGTCACCACG
GAAAGTGCTTGTGTTGGTATTCCTGACGGCGATGCAGGATACCTTGGCAACCAACGTGTA
CATTGCTTTTTTGGCTTTTATTGTACAGTCAGTACTACAAATTTTCTGTTTTGAGTTTTG
TAACTTTGTAGCATTTTAGATAATGTTGTGTTTGTACTTTGTTGTGTAGAGTAAAAGGGC
TGTGTTGAATAAACCTTGAATAGTGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q99M28_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q99M28_MOUSE

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               965-1115, - strand, RNAz p=0.965655

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               965-1115, - strand, RNAz p=0.965655

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               883-981, - strand, RNAmicro p=0.992803

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               883-981, - strand, RNAmicro p=0.992803

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               647-1326, gnl|bosTau2|chr17 (18742107-18742755)
               

               
               647-1326, gnl|Hg17|chr4 (11049982-11050724)
               

               
               647-1326, gnl|Mm7|chr6 (7941135-7940393)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               647-1326, gnl|bosTau2|chr17 (18742107-18742755)
               

               
               647-1326, gnl|Hg17|chr4 (11049982-11050724)
               

               
               647-1326, gnl|Mm7|chr6 (7941135-7940393)

Expressed library(ies): 57 entry(ies)

More info

Expressed library(ies): 57 entry(ies)

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               sto (0.899119)
               

               
               fce (0.814775)
               

               
               cte (0.58548)
               

               
               eye (0.511509)
               

               
               thg (0.507164)
               

               
               nbm (0.496623)
               

               
               csp (0.483559)
               

               
               cag (0.453583)
               

               
               ute (0.398353)
               

               
               cov (0.396458)
               

               
               jej (0.395687)
               

               
               elu (0.385356)
               

               
               mcp (0.341297)
               

               
               fhi (0.339155)
               

               
               cki (0.330469)
               

               
               cje (0.330469)
               

               
               lnt (0.284616)
               

               
               csk (0.281492)
               

               
               cst (0.280073)
               

               
               cga (0.279096)
               

               
               che (0.272628)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               med (0.232504)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               eje (0.197668)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               ctl (0.153069)
               

               
               eli (0.151814)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 57 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.899119)
               

               
               fce (0.814775)
               

               
               cte (0.58548)
               

               
               eye (0.511509)
               

               
               thg (0.507164)
               

               
               nbm (0.496623)
               

               
               csp (0.483559)
               

               
               cag (0.453583)
               

               
               ute (0.398353)
               

               
               cov (0.396458)
               

               
               jej (0.395687)
               

               
               elu (0.385356)
               

               
               mcp (0.341297)
               

               
               fhi (0.339155)
               

               
               cki (0.330469)
               

               
               cje (0.330469)
               

               
               lnt (0.284616)
               

               
               csk (0.281492)
               

               
               cst (0.280073)
               

               
               cga (0.279096)
               

               
               che (0.272628)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               med (0.232504)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               eje (0.197668)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               ctl (0.153069)
               

               
               eli (0.151814)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	647-1326, gnl\|bosTau2\|chr17 (18742107-18742755)
	647-1326, gnl\|Hg17\|chr4 (11049982-11050724)
	647-1326, gnl\|Mm7\|chr6 (7941135-7940393)

	sto (0.899119)
	fce (0.814775)
	cte (0.58548)
	eye (0.511509)
	thg (0.507164)
	nbm (0.496623)
	csp (0.483559)
	cag (0.453583)
	ute (0.398353)
	cov (0.396458)
	jej (0.395687)
	elu (0.385356)
	mcp (0.341297)
	fhi (0.339155)
	cki (0.330469)
	cje (0.330469)
	lnt (0.284616)
	csk (0.281492)
	cst (0.280073)
	cga (0.279096)
	che (0.272628)
	cbe (0.239234)
	pgl (0.236967)
	med (0.232504)
	ecc (0.23007)
	ece (0.229305)
	jca (0.22792)
	hea (0.204499)
	fli (0.202881)
	eje (0.197668)
	nlu (0.191681)
	cmu (0.186393)
	fty (0.17584)
	ill (0.175593)
	fbs (0.175346)
	sin (0.174948)
	rec (0.17307)
	duo (0.172801)
	cut (0.169924)
	nco (0.161734)
	mga (0.160205)
	ctl (0.153069)
	eli (0.151814)
	liv (0.146284)
	lin (0.145603)
	hyp (0.142837)
	nca (0.136874)
	pla (0.133672)
	ova (0.129132)
	sug (0.127291)
	ese (0.126502)
	eep (0.122564)
	cly (0.120642)
	eru (0.120048)
	spc (0.113366)
	cty (0.10408)
	ldo (0.0970026)