Non-Coding RNA Search

Ss1.1-Pig4-TMW8067M15.3

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGAGCACACGTGCACTTTAATCGTGG
GGGGGGCTCCAGAGGAGACAGGGTTTTCCCCAGGTTCGTGTAAAAATGAAACGGGGTCCA
GATACTGTTTACACAGACAATGACAGTAAATTTCAAGGCCGCGACTCGAGCCACGTGTCT
CGACAGACAGAACACAGGGGAGCAGGGGTGGGTGCCCGGCGCCGGGGCTGCTCCGCTCGC
CGCGGGCTTCATGGGACCCGGGCCGGGCTCCTGCGCCGGCCTCCTGGGTGGCCCGGCCGG
CGCCTCCCGGCAGCACAATAAATAGGAGAATCCCACGGAGAAGGGACAGGCAGCCCCGCC
CCGCGAGAGGCTGGGCCGACTCTTCACAGACCGAGCAGGTCTCCGAGCGGTGGCGGTGGC
GTGGGTCCCGGCCCCACACCCGGCGCCGCCTCGCCCGGGGGCGGGGGCGGGGGCGGGCGC
CGGCCCTGCGGGGCGGCCTAGCCCTCCCGCACGCTGACGCGCGGCTCGGCCAGGCAGCTG
TGGATGATGCTGAGGATGGACTCCAGGCCGCTGCCCTCCAGCAGCGTGCGGTGGTCGCCC
TCGATGACGTGCACCGAGACCTTGCCGTCGCACACCTGCGACAGGTTGTAGTCGGCGCCC
AGGTCCTCGCCGTAGGCGCCGCCCGTCTTGGCGCGCAGCAGCGTCACGTTGCCGTGGTAG
GTGGCCTGCGGCCAGTAGTTCTCGGCGGCGCGCAGCTTCTGGTAGAAGGAGCGAGCGGCG
AAGCTGAGGGCGTGGCGGTCCAGGCCCGCGTGGCTCTGCGTGATCAGGTCCACGGTGGCC
GCCACGCGCGCCTCCAGGCCCTGGAGCGGTATCAGCGCCTCCAGCACCTTGCCTTGCTCC
ATGTCGGTGAACTGCTGCACGAAGAAGTACATGGCCTTGGCCTCGGCCTCGGCCTCGCAG
CCGGGGGTCATCTTAGCGCGGACGCTCTGCGTGTAGGCCAGCACGAAGGTGTGTGAGCCG
TCGAACAGGAAGAGGCTGTGGTTCCCGGGGGTGGCGCTCTGCTGGGCCTGCAGCTGCGAG
CACATCTCGAAGGCCACGCAGGCCCCGTAAGAGTAGCCGGCGATGCGGTAAGGCCCCTCG
GGCTGCACCTGTCTGATGCACTCGATGTAGTAGGAGGCCAGGCTCTGGATGCTGTCCAGC
GGGGCGGCTCCCGTGCACTGCAGGCCGTAGGTGGGGATGCTGAGCTTGGCGGCCAGGCCG
TGGAACACGGTGATGGAGCCCTCGATGGGGTGGACCAGGAACAGGGGCCGCTCTGCGCTC
TGCACGGAGTTGAGCCGCGTCAAGGTCGGGCCCTCGGGGTTCACCAGCAGGGTGCTCAGG
TTCAGCGTTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGAGCACACGTGCACTTTAATCGTGG
GGGGGGCTCCAGAGGAGACAGGGTTTTCCCCAGGTTCGTGTAAAAATGAAACGGGGTCCA
GATACTGTTTACACAGACAATGACAGTAAATTTCAAGGCCGCGACTCGAGCCACGTGTCT
CGACAGACAGAACACAGGGGAGCAGGGGTGGGTGCCCGGCGCCGGGGCTGCTCCGCTCGC
CGCGGGCTTCATGGGACCCGGGCCGGGCTCCTGCGCCGGCCTCCTGGGTGGCCCGGCCGG
CGCCTCCCGGCAGCACAATAAATAGGAGAATCCCACGGAGAAGGGACAGGCAGCCCCGCC
CCGCGAGAGGCTGGGCCGACTCTTCACAGACCGAGCAGGTCTCCGAGCGGTGGCGGTGGC
GTGGGTCCCGGCCCCACACCCGGCGCCGCCTCGCCCGGGGGCGGGGGCGGGGGCGGGCGC
CGGCCCTGCGGGGCGGCCTAGCCCTCCCGCACGCTGACGCGCGGCTCGGCCAGGCAGCTG
TGGATGATGCTGAGGATGGACTCCAGGCCGCTGCCCTCCAGCAGCGTGCGGTGGTCGCCC
TCGATGACGTGCACCGAGACCTTGCCGTCGCACACCTGCGACAGGTTGTAGTCGGCGCCC
AGGTCCTCGCCGTAGGCGCCGCCCGTCTTGGCGCGCAGCAGCGTCACGTTGCCGTGGTAG
GTGGCCTGCGGCCAGTAGTTCTCGGCGGCGCGCAGCTTCTGGTAGAAGGAGCGAGCGGCG
AAGCTGAGGGCGTGGCGGTCCAGGCCCGCGTGGCTCTGCGTGATCAGGTCCACGGTGGCC
GCCACGCGCGCCTCCAGGCCCTGGAGCGGTATCAGCGCCTCCAGCACCTTGCCTTGCTCC
ATGTCGGTGAACTGCTGCACGAAGAAGTACATGGCCTTGGCCTCGGCCTCGGCCTCGCAG
CCGGGGGTCATCTTAGCGCGGACGCTCTGCGTGTAGGCCAGCACGAAGGTGTGTGAGCCG
TCGAACAGGAAGAGGCTGTGGTTCCCGGGGGTGGCGCTCTGCTGGGCCTGCAGCTGCGAG
CACATCTCGAAGGCCACGCAGGCCCCGTAAGAGTAGCCGGCGATGCGGTAAGGCCCCTCG
GGCTGCACCTGTCTGATGCACTCGATGTAGTAGGAGGCCAGGCTCTGGATGCTGTCCAGC
GGGGCGGCTCCCGTGCACTGCAGGCCGTAGGTGGGGATGCTGAGCTTGGCGGCCAGGCCG
TGGAACACGGTGATGGAGCCCTCGATGGGGTGGACCAGGAACAGGGGCCGCTCTGCGCTC
TGCACGGAGTTGAGCCGCGTCAAGGTCGGGCCCTCGGGGTTCACCAGCAGGGTGCTCAGG
TTCAGCGTTGCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|38196977|gb|AAH14634.2|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|38196977|gb|AAH14634.2|

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               74-308, gnl|bosTau2|chr19 (44281039-44281286)
               

               
               74-308, gnl|Hg17|chr17 (77629529-77629804)
               

               
               74-308, gnl|Mm7|chr11 (120916161-120916493)
               


               
               469-889, gnl|bosTau2|chr19 (44281560-44281979)
               

               
               469-889, gnl|Hg17|chr17 (77630255-77630775)
               

               
               469-889, gnl|Mm7|chr11 (120916858-120917373)
               


               
               987-1222, gnl|bosTau2|chr19 (44282240-44282474)
               

               
               987-1222, gnl|Hg17|chr17 (77631535-77631771)
               

               
               987-1222, gnl|Mm7|chr11 (120917764-120917995)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               74-308, gnl|bosTau2|chr19 (44281039-44281286)
               

               
               74-308, gnl|Hg17|chr17 (77629529-77629804)
               

               
               74-308, gnl|Mm7|chr11 (120916161-120916493)
               


               
               469-889, gnl|bosTau2|chr19 (44281560-44281979)
               

               
               469-889, gnl|Hg17|chr17 (77630255-77630775)
               

               
               469-889, gnl|Mm7|chr11 (120916858-120917373)
               


               
               987-1222, gnl|bosTau2|chr19 (44282240-44282474)
               

               
               987-1222, gnl|Hg17|chr17 (77631535-77631771)
               

               
               987-1222, gnl|Mm7|chr11 (120917764-120917995)

Expressed library(ies): 23 entry(ies)

More info

Expressed library(ies): 23 entry(ies)

Help | Less info


               
               cga (1.11638)
               

               
               fbs (0.701385)
               

               
               fce (0.543183)
               

               
               pla (0.534688)
               

               
               mcp (0.511945)
               

               
               jca (0.45584)
               

               
               cov (0.396458)
               

               
               med (0.348756)
               

               
               hyp (0.285673)
               

               
               nca (0.273748)
               

               
               ese (0.253004)
               

               
               cly (0.241284)
               

               
               clu (0.239292)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               lnt (0.142308)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (1.11638)
               

               
               fbs (0.701385)
               

               
               fce (0.543183)
               

               
               pla (0.534688)
               

               
               mcp (0.511945)
               

               
               jca (0.45584)
               

               
               cov (0.396458)
               

               
               med (0.348756)
               

               
               hyp (0.285673)
               

               
               nca (0.273748)
               

               
               ese (0.253004)
               

               
               cly (0.241284)
               

               
               clu (0.239292)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               lnt (0.142308)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	74-308, gnl\|bosTau2\|chr19 (44281039-44281286)
	74-308, gnl\|Hg17\|chr17 (77629529-77629804)
	74-308, gnl\|Mm7\|chr11 (120916161-120916493)

	469-889, gnl\|bosTau2\|chr19 (44281560-44281979)
	469-889, gnl\|Hg17\|chr17 (77630255-77630775)
	469-889, gnl\|Mm7\|chr11 (120916858-120917373)

	987-1222, gnl\|bosTau2\|chr19 (44282240-44282474)
	987-1222, gnl\|Hg17\|chr17 (77631535-77631771)
	987-1222, gnl\|Mm7\|chr11 (120917764-120917995)

	cga (1.11638)
	fbs (0.701385)
	fce (0.543183)
	pla (0.534688)
	mcp (0.511945)
	jca (0.45584)
	cov (0.396458)
	med (0.348756)
	hyp (0.285673)
	nca (0.273748)
	ese (0.253004)
	cly (0.241284)
	clu (0.239292)
	ece (0.229305)
	nms (0.213858)
	fcc (0.197785)
	col (0.195008)
	cli (0.152812)
	eli (0.151814)
	lnt (0.142308)
	eru (0.120048)
	nbm (0.0993246)
	jej (0.0989218)