Ss1.1-Pig4-TMW8067M18.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGATTAACCATTTAGAATATGAGGACCAATATAAGGATGACAATTTTGGAGAAGGAAATG ATGGTGGTATACTAGATGACAAACTTATTAGTAATAACGATGGAGGTATCTTCGACGATC CCCCGGCCCTGTCTGAGGCGGGGGTGATGTTGCCAGAACAGCCTGCACATGATGATATGG ATGAGGATGATAACGTATCAATGGGTGGGCCTGATAGTCCCGATTCGGTGGATCCTGTCG AACCAATGCCAACTATGACTGATCAGACAACACTTGTCCCAAATGAGGAAGAAGCCTTTG CTTTGGAACCTATTGATATCACTGTTAAAGAAACAAAAGCCAAGAGAAAGAGGAAGCTAA TTGTTGACAGTGTCAAAGAGTTGGATAGCAAGACGATTAGAGCCCAACTCAGTGATTACT CTGATATTGTTACTACTTTGGATCTGGCACCACCCACCAAGAAATTGATGATGTGGAAAG AGACGGGGGGAGTGGAAAAACTCTTCTCTTTGCCTGCTCAGCCTTTGTGGAATAACAGAC TACTGAAGCTCTTTACACGCTGTCTTACACCACTAGTACCAGAAGATCTTAGAAAAAGGC GGAAAGGAGGAGAAGCTGATAATTTGGATGAATTCCTCAAAGAATTTGAAAATCCAGAGG TTCCCAGAGAGGACCAGCAGCAACAGCATCAGCAGCGTGATGTTATCGATGAGCCCATTT TGGAAGAGCCAAGCCGCCTCCAGGACTCTGCGATGGAGGCCAGCAGAACAAACTTGGATG AGTCAGCCATGCCCCCCCCACCACCTCAGGGAGTTAAGCGGAAGGCAGGACAAATTGATC CAGAGCCTGTGATCCCTCCGCAGCAGGTAGAGCATATGGAAATACCTCCTGTAGAGCTGC CCCCAGAAGAACCACCAAATATCTGTCAGTTAATCCCAGAGTTAGAACTCCTACCAGAGA AGGAGAAAGAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGATTAACCATTTAGAATATGAGGACCAATATAAGGATGACAATTTTGGAGAAGGAAATG ATGGTGGTATACTAGATGACAAACTTATTAGTAATAACGATGGAGGTATCTTCGACGATC CCCCGGCCCTGTCTGAGGCGGGGGTGATGTTGCCAGAACAGCCTGCACATGATGATATGG ATGAGGATGATAACGTATCAATGGGTGGGCCTGATAGTCCCGATTCGGTGGATCCTGTCG AACCAATGCCAACTATGACTGATCAGACAACACTTGTCCCAAATGAGGAAGAAGCCTTTG CTTTGGAACCTATTGATATCACTGTTAAAGAAACAAAAGCCAAGAGAAAGAGGAAGCTAA TTGTTGACAGTGTCAAAGAGTTGGATAGCAAGACGATTAGAGCCCAACTCAGTGATTACT CTGATATTGTTACTACTTTGGATCTGGCACCACCCACCAAGAAATTGATGATGTGGAAAG AGACGGGGGGAGTGGAAAAACTCTTCTCTTTGCCTGCTCAGCCTTTGTGGAATAACAGAC TACTGAAGCTCTTTACACGCTGTCTTACACCACTAGTACCAGAAGATCTTAGAAAAAGGC GGAAAGGAGGAGAAGCTGATAATTTGGATGAATTCCTCAAAGAATTTGAAAATCCAGAGG TTCCCAGAGAGGACCAGCAGCAACAGCATCAGCAGCGTGATGTTATCGATGAGCCCATTT TGGAAGAGCCAAGCCGCCTCCAGGACTCTGCGATGGAGGCCAGCAGAACAAACTTGGATG AGTCAGCCATGCCCCCCCCACCACCTCAGGGAGTTAAGCGGAAGGCAGGACAAATTGATC CAGAGCCTGTGATCCCTCCGCAGCAGGTAGAGCATATGGAAATACCTCCTGTAGAGCTGC CCCCAGAAGAACCACCAAATATCTGTCAGTTAATCCCAGAGTTAGAACTCCTACCAGAGA AGGAGAAAGAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 74-857, - strand, RNAz p=0.927239 | |
| 730-833, + strand, RNAz p=0.963453 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 74-857, - strand, RNAz p=0.927239 | |
| 730-833, + strand, RNAz p=0.963453 |
| Aligned organism(s): 86 entry(ies) | More info |
| Aligned organism(s): 86 entry(ies) | Help | Less info |
| 74-201, gnl|bosTau2|chr14 (29563143-29563270) | |
| 74-201, gnl|canFam2|chr13 (19380590-19380723) | |
| 74-201, gnl|danRer3|chr16 (50964858-50964988) | |
| 74-201, gnl|dasNov1|scaffold_5743 (28913-28796) | |
| 74-201, gnl|echTel1|scaffold_301700 (4177-4044) | |
| 74-201, gnl|galGal2|chr2 (133704971-133704838) | |
| 74-201, gnl|hg17|chr8 (117938059-117938192) | |
| 74-201, gnl|Hg17|chr8 (117938193-117938066) | |
| 74-201, gnl|loxAfr1|scaffold_19777 (17502-17369) | |
| 74-201, gnl|mm7|chr15 (52026314-52026447) | |
| 74-201, gnl|Mm7|chr15 (52026448-52026321) | |
| 74-201, gnl|monDom2|scaffold_3 (40018728-40018595) | |
| 74-201, gnl|panTro1|chr7 (120595285-120595418) | |
| 74-201, gnl|rheMac2|chr8 (119373124-119373257) | |
| 74-201, gnl|rn3|chr7 (88297439-88297572) | |
| 74-201, gnl|xenTro1|scaffold_301 (446117-446250) | |
| 324-548, gnl|bosTau2|chr14 (29565344-29565568) | |
| 324-548, gnl|canFam2|chr13 (19378897-19379131) | |
| 324-548, gnl|canFam2|chr13 (19379132-19378910) | |
| 324-548, gnl|danRer3|chr16 (50960703-50960928) | |
| 324-548, gnl|danRer3|chr16 (50960926-50960706) | |
| 324-548, gnl|dasNov1|scaffold_5743 (29244-29026) | |
| 324-548, gnl|dasNov1|scaffold_5743 (29025-29242) | |
| 324-548, gnl|echTel1|scaffold_301700 (5831-5602) | |
| 324-548, gnl|echTel1|scaffold_301700 (5601-5823) | |
| 324-548, gnl|fr1|chrUn (55703247-55703013) | |
| 324-548, gnl|fr1|chrUn (55703015-55703235) | |
| 324-548, gnl|galGal2|chr2 (133706750-133706516) | |
| 324-548, gnl|galGal2|chr2 (133706515-133706737) | |
| 324-548, gnl|hg17|chr8 (117935655-117935889) | |
| 324-548, gnl|Hg17|chr8 (117935889-117935665) | |
| 324-548, gnl|hg17|chrX (99863241-99863464) | |
| 324-548, gnl|loxAfr1|scaffold_19777 (20545-20311) | |
| 324-548, gnl|loxAfr1|scaffold_19777 (20310-20532) | |
| 324-548, gnl|mm7|chr15 (52024030-52024264) | |
| 324-548, gnl|mm7|chr15 (52024264-52024043) | |
| 324-548, gnl|Mm7|chr15 (52024264-52024040) | |
| 324-548, gnl|monDom2|scaffold_3 (40020345-40020115) | |
| 324-548, gnl|monDom2|scaffold_3 (40020114-40020337) | |
| 324-548, gnl|oryCun1|scaffold_159912 (41250-41484) | |
| 324-548, gnl|oryCun1|scaffold_159912 (41484-41263) | |
| 324-548, gnl|panTro1|chr7 (120592892-120593126) | |
| 324-548, gnl|panTro1|chr7 (120593126-120592905) | |
| 324-548, gnl|rheMac2|chr8 (119370713-119370947) | |
| 324-548, gnl|rheMac2|chrX (99512563-99512786) | |
| 324-548, gnl|rn3|chr7 (88295173-88295407) | |
| 324-548, gnl|rn3|chr7 (88295407-88295186) | |
| 324-548, gnl|tetNig1|chr8 (3498922-3498697) | |
| 324-548, gnl|tetNig1|chr8 (3498699-3498919) | |
| 324-548, gnl|xenTro1|scaffold_301 (445254-445477) | |
| 324-548, gnl|xenTro1|scaffold_301 (445478-445256) | |
| 703-857, gnl|bosTau2|chr14 (29567284-29567435) | |
| 703-857, gnl|canFam2|chr13 (19377035-19377198) | |
| 703-857, gnl|danRer3|chr16 (50956487-50956654) | |
| 703-857, gnl|dasNov1|scaffold_66913 (7593-7756) | |
| 703-857, gnl|echTel1|scaffold_301700 (7683-7521) | |
| 703-857, gnl|fr1|chrUn (55703775-55703622) | |
| 703-857, gnl|galGal2|chr2 (133707757-133707594) | |
| 703-857, gnl|hg17|chr8 (117933361-117933524) | |
| 703-857, gnl|Hg17|chr8 (117933522-117933368) | |
| 703-857, gnl|loxAfr1|scaffold_19777 (22875-22712) | |
| 703-857, gnl|mm7|chr15 (52021898-52022063) | |
| 703-857, gnl|Mm7|chr15 (52022061-52021907) | |
| 703-857, gnl|monDom2|scaffold_3 (40022114-40021948) | |
| 703-857, gnl|oryCun1|scaffold_159912 (38723-38886) | |
| 703-857, gnl|panTro1|chr7 (120590589-120590752) | |
| 703-857, gnl|rheMac2|chr8 (119368459-119368622) | |
| 703-857, gnl|rn3|chr7 (88293225-88293390) | |
| 703-857, gnl|tetNig1|chr8 (3499453-3499297) | |
| 703-857, gnl|xenTro1|scaffold_301 (444721-444888) | |
| 858-972, gnl|bosTau2|chr14 (29570384-29570498) | |
| 858-972, gnl|canFam2|chr13 (19374551-19374452) | |
| 858-972, gnl|danRer3|chr16 (50956359-50956272) | |
| 858-972, gnl|dasNov1|scaffold_5743 (29520-29604) | |
| 858-972, gnl|echTel1|scaffold_301700 (9307-9406) | |
| 858-972, gnl|galGal2|chr2 (133708966-133709052) | |
| 858-972, gnl|Hg17|chr8 (117932187-117932073) | |
| 858-972, gnl|hg17|chrX (99863771-99863870) | |
| 858-972, gnl|mm7|chr15 (52020851-52020752) | |
| 858-972, gnl|Mm7|chr15 (52020850-52020736) | |
| 858-972, gnl|monDom2|scaffold_3 (40023956-40024055) | |
| 858-972, gnl|oryCun1|scaffold_159912 (37531-37432) | |
| 858-972, gnl|panTro1|chr7 (120589415-120589316) | |
| 858-972, gnl|rheMac2|chrX (99513092-99513191) | |
| 858-972, gnl|rn3|chr7 (88292379-88292280) | |
| 858-972, gnl|xenTro1|scaffold_301 (443928-443853) |
| Aligned organism(s): 86 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 74-201, gnl|bosTau2|chr14 (29563143-29563270) | |
| 74-201, gnl|canFam2|chr13 (19380590-19380723) | |
| 74-201, gnl|danRer3|chr16 (50964858-50964988) | |
| 74-201, gnl|dasNov1|scaffold_5743 (28913-28796) | |
| 74-201, gnl|echTel1|scaffold_301700 (4177-4044) | |
| 74-201, gnl|galGal2|chr2 (133704971-133704838) | |
| 74-201, gnl|hg17|chr8 (117938059-117938192) | |
| 74-201, gnl|Hg17|chr8 (117938193-117938066) | |
| 74-201, gnl|loxAfr1|scaffold_19777 (17502-17369) | |
| 74-201, gnl|mm7|chr15 (52026314-52026447) | |
| 74-201, gnl|Mm7|chr15 (52026448-52026321) | |
| 74-201, gnl|monDom2|scaffold_3 (40018728-40018595) | |
| 74-201, gnl|panTro1|chr7 (120595285-120595418) | |
| 74-201, gnl|rheMac2|chr8 (119373124-119373257) | |
| 74-201, gnl|rn3|chr7 (88297439-88297572) | |
| 74-201, gnl|xenTro1|scaffold_301 (446117-446250) | |
| 324-548, gnl|bosTau2|chr14 (29565344-29565568) | |
| 324-548, gnl|canFam2|chr13 (19378897-19379131) | |
| 324-548, gnl|canFam2|chr13 (19379132-19378910) | |
| 324-548, gnl|danRer3|chr16 (50960703-50960928) | |
| 324-548, gnl|danRer3|chr16 (50960926-50960706) | |
| 324-548, gnl|dasNov1|scaffold_5743 (29244-29026) | |
| 324-548, gnl|dasNov1|scaffold_5743 (29025-29242) | |
| 324-548, gnl|echTel1|scaffold_301700 (5831-5602) | |
| 324-548, gnl|echTel1|scaffold_301700 (5601-5823) | |
| 324-548, gnl|fr1|chrUn (55703247-55703013) | |
| 324-548, gnl|fr1|chrUn (55703015-55703235) | |
| 324-548, gnl|galGal2|chr2 (133706750-133706516) | |
| 324-548, gnl|galGal2|chr2 (133706515-133706737) | |
| 324-548, gnl|hg17|chr8 (117935655-117935889) | |
| 324-548, gnl|Hg17|chr8 (117935889-117935665) | |
| 324-548, gnl|hg17|chrX (99863241-99863464) | |
| 324-548, gnl|loxAfr1|scaffold_19777 (20545-20311) | |
| 324-548, gnl|loxAfr1|scaffold_19777 (20310-20532) | |
| 324-548, gnl|mm7|chr15 (52024030-52024264) | |
| 324-548, gnl|mm7|chr15 (52024264-52024043) | |
| 324-548, gnl|Mm7|chr15 (52024264-52024040) | |
| 324-548, gnl|monDom2|scaffold_3 (40020345-40020115) | |
| 324-548, gnl|monDom2|scaffold_3 (40020114-40020337) | |
| 324-548, gnl|oryCun1|scaffold_159912 (41250-41484) | |
| 324-548, gnl|oryCun1|scaffold_159912 (41484-41263) | |
| 324-548, gnl|panTro1|chr7 (120592892-120593126) | |
| 324-548, gnl|panTro1|chr7 (120593126-120592905) | |
| 324-548, gnl|rheMac2|chr8 (119370713-119370947) | |
| 324-548, gnl|rheMac2|chrX (99512563-99512786) | |
| 324-548, gnl|rn3|chr7 (88295173-88295407) | |
| 324-548, gnl|rn3|chr7 (88295407-88295186) | |
| 324-548, gnl|tetNig1|chr8 (3498922-3498697) | |
| 324-548, gnl|tetNig1|chr8 (3498699-3498919) | |
| 324-548, gnl|xenTro1|scaffold_301 (445254-445477) | |
| 324-548, gnl|xenTro1|scaffold_301 (445478-445256) | |
| 703-857, gnl|bosTau2|chr14 (29567284-29567435) | |
| 703-857, gnl|canFam2|chr13 (19377035-19377198) | |
| 703-857, gnl|danRer3|chr16 (50956487-50956654) | |
| 703-857, gnl|dasNov1|scaffold_66913 (7593-7756) | |
| 703-857, gnl|echTel1|scaffold_301700 (7683-7521) | |
| 703-857, gnl|fr1|chrUn (55703775-55703622) | |
| 703-857, gnl|galGal2|chr2 (133707757-133707594) | |
| 703-857, gnl|hg17|chr8 (117933361-117933524) | |
| 703-857, gnl|Hg17|chr8 (117933522-117933368) | |
| 703-857, gnl|loxAfr1|scaffold_19777 (22875-22712) | |
| 703-857, gnl|mm7|chr15 (52021898-52022063) | |
| 703-857, gnl|Mm7|chr15 (52022061-52021907) | |
| 703-857, gnl|monDom2|scaffold_3 (40022114-40021948) | |
| 703-857, gnl|oryCun1|scaffold_159912 (38723-38886) | |
| 703-857, gnl|panTro1|chr7 (120590589-120590752) | |
| 703-857, gnl|rheMac2|chr8 (119368459-119368622) | |
| 703-857, gnl|rn3|chr7 (88293225-88293390) | |
| 703-857, gnl|tetNig1|chr8 (3499453-3499297) | |
| 703-857, gnl|xenTro1|scaffold_301 (444721-444888) | |
| 858-972, gnl|bosTau2|chr14 (29570384-29570498) | |
| 858-972, gnl|canFam2|chr13 (19374551-19374452) | |
| 858-972, gnl|danRer3|chr16 (50956359-50956272) | |
| 858-972, gnl|dasNov1|scaffold_5743 (29520-29604) | |
| 858-972, gnl|echTel1|scaffold_301700 (9307-9406) | |
| 858-972, gnl|galGal2|chr2 (133708966-133709052) | |
| 858-972, gnl|Hg17|chr8 (117932187-117932073) | |
| 858-972, gnl|hg17|chrX (99863771-99863870) | |
| 858-972, gnl|mm7|chr15 (52020851-52020752) | |
| 858-972, gnl|Mm7|chr15 (52020850-52020736) | |
| 858-972, gnl|monDom2|scaffold_3 (40023956-40024055) | |
| 858-972, gnl|oryCun1|scaffold_159912 (37531-37432) | |
| 858-972, gnl|panTro1|chr7 (120589415-120589316) | |
| 858-972, gnl|rheMac2|chrX (99513092-99513191) | |
| 858-972, gnl|rn3|chr7 (88292379-88292280) | |
| 858-972, gnl|xenTro1|scaffold_301 (443928-443853) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| amn (0.417711) | |
| cbl (0.229595) | |
| nmm (0.132802) | |
| ecc (0.115035) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| cbl (0.229595) | |
| nmm (0.132802) | |
| ecc (0.115035) |