Non-Coding RNA Search

Ss1.1-Pig4-TMW8067M19.3

Sequence:


               
               ACATGGTCAACTCTTGTTGAGCCTCTAGGTTTATCGGATGTGAACCCTCTTGAAGGAAAT
GTTTACAGTTGTGTGCACAGAAGTACGCCCGTGCAGGCACCCCCCCCCCCCCACCATGTG
CTCCTGGACCACTTCCTTCATCACCCACTGGAAAGGGCAGACAGTTTAAATGGCAGCCTA
AGCGAAACAGCACCGAGAAGGTCAGACTGTTCTTGAATGGATCCAGGATATGGTGCCACC
GGCCAAAGGAAGCGATTTGGGATCACTGGTCCTTCGGTGTAGACACATTCGAGTTCCTTG
GACTTCTCACACTCCTTTTCACTTGATCCCTCTCGGGTCTGGGTCGCATCTATGGCATCT
GTCTCCCTCTGTGACGTTTCTTTGGGGGCCGTTGTTAAAGGGGATGGTACCCCGGTCTGG
CATCCAGACTTTGAAGTCAGCCCAGAAGGTCCCATGGACAAGGTGCATCTCAGCCTTGCC
AAGGACTTTCCTGCTCCTGGGGCCCTGAACTAAGCCAGCTCAGCCTTCCAGCTGCTTATC
AACTGTCGAAGTGGGCAAGGAGCTGTTGCCTTGCAAGGATTTGGGCGAAATGAAAGTCTT
TTGTCCAGATCTGGAATCAAGGGTTTTGGAATCTAGCACTGAGCTCCTGGCCAGCATTTG
AAGCCTGGCTTCCCACTCTGACATTTCCTGGCATCCTATTCCTAGCCTAGAGCATTTGCT
ATGAATGATAGGGGCCCAGATGGAAGCCCAGGGCTAAGGAACCCACCCAGGGATAGTCCT
GGTCACTAATCTAGGGCCTTCCCAATTAGCACATTTCCTCCGTCATCAATAACCAAGAGG
CTGTAATCAAATACTAACTCTGTCACTTAAAAGATGTTCTGAGGTTGCAAGCTGTGCTCA
CTTGCTTTCTTGCCTTGGTGAGAGGCATGCTCTTGGACCACGGCTGACTACAGCAAGACA
GAATTAATTCCTTTCCCCCTTAGGCACCCCCCCCCAACCTGGCAGCTTTTAAAACTAAGG
AAAATATGAAATATACATATATATATATATATACATATATCTATTTATGCACATATTGGG
GCCAATTTGATTTGCTAGTATTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATGGTCAACTCTTGTTGAGCCTCTAGGTTTATCGGATGTGAACCCTCTTGAAGGAAAT
GTTTACAGTTGTGTGCACAGAAGTACGCCCGTGCAGGCACCCCCCCCCCCCCACCATGTG
CTCCTGGACCACTTCCTTCATCACCCACTGGAAAGGGCAGACAGTTTAAATGGCAGCCTA
AGCGAAACAGCACCGAGAAGGTCAGACTGTTCTTGAATGGATCCAGGATATGGTGCCACC
GGCCAAAGGAAGCGATTTGGGATCACTGGTCCTTCGGTGTAGACACATTCGAGTTCCTTG
GACTTCTCACACTCCTTTTCACTTGATCCCTCTCGGGTCTGGGTCGCATCTATGGCATCT
GTCTCCCTCTGTGACGTTTCTTTGGGGGCCGTTGTTAAAGGGGATGGTACCCCGGTCTGG
CATCCAGACTTTGAAGTCAGCCCAGAAGGTCCCATGGACAAGGTGCATCTCAGCCTTGCC
AAGGACTTTCCTGCTCCTGGGGCCCTGAACTAAGCCAGCTCAGCCTTCCAGCTGCTTATC
AACTGTCGAAGTGGGCAAGGAGCTGTTGCCTTGCAAGGATTTGGGCGAAATGAAAGTCTT
TTGTCCAGATCTGGAATCAAGGGTTTTGGAATCTAGCACTGAGCTCCTGGCCAGCATTTG
AAGCCTGGCTTCCCACTCTGACATTTCCTGGCATCCTATTCCTAGCCTAGAGCATTTGCT
ATGAATGATAGGGGCCCAGATGGAAGCCCAGGGCTAAGGAACCCACCCAGGGATAGTCCT
GGTCACTAATCTAGGGCCTTCCCAATTAGCACATTTCCTCCGTCATCAATAACCAAGAGG
CTGTAATCAAATACTAACTCTGTCACTTAAAAGATGTTCTGAGGTTGCAAGCTGTGCTCA
CTTGCTTTCTTGCCTTGGTGAGAGGCATGCTCTTGGACCACGGCTGACTACAGCAAGACA
GAATTAATTCCTTTCCCCCTTAGGCACCCCCCCCCAACCTGGCAGCTTTTAAAACTAAGG
AAAATATGAAATATACATATATATATATATATACATATATCTATTTATGCACATATTGGG
GCCAATTTGATTTGCTAGTATTAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               640-870, - strand, RNAz p=0.997454

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               640-870, - strand, RNAz p=0.997454

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               765-898, - strand, RNAmicro p=0.989716

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               765-898, - strand, RNAmicro p=0.989716

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-164, gnl|bosTau2|chr16 (2153366-2153527)
               

               
               1-164, gnl|Hg17|chr1 (200921108-200920925)
               

               
               1-164, gnl|Mm7|chr1 (133202978-133203141)
               


               
               179-1104, gnl|bosTau2|chr16 (2153516-2154429)
               

               
               179-1104, gnl|Hg17|chr1 (200920936-200919956)
               

               
               179-1104, gnl|Mm7|chr1 (133203120-133204039)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-164, gnl|bosTau2|chr16 (2153366-2153527)
               

               
               1-164, gnl|Hg17|chr1 (200921108-200920925)
               

               
               1-164, gnl|Mm7|chr1 (133202978-133203141)
               


               
               179-1104, gnl|bosTau2|chr16 (2153516-2154429)
               

               
               179-1104, gnl|Hg17|chr1 (200920936-200919956)
               

               
               179-1104, gnl|Mm7|chr1 (133203120-133204039)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               ill (0.175593)
               

               
               pla (0.133672)
               

               
               jej (0.0989218)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               pla (0.133672)
               

               
               jej (0.0989218)

	1-164, gnl\|bosTau2\|chr16 (2153366-2153527)
	1-164, gnl\|Hg17\|chr1 (200921108-200920925)
	1-164, gnl\|Mm7\|chr1 (133202978-133203141)

	179-1104, gnl\|bosTau2\|chr16 (2153516-2154429)
	179-1104, gnl\|Hg17\|chr1 (200920936-200919956)
	179-1104, gnl\|Mm7\|chr1 (133203120-133204039)