Non-Coding RNA Search

Ss1.1-Pig4-TMW8067N09.3

Sequence:


               
               TGGGAGCAGTACTGAGGCCTGAGCATGGAGCTGCCGGATCCGGTCCGCCAGCGGCTGGGA
AACTTCAGCCGGACCGTGTTCAGCGACTCCAACCGGACCGGGCCGGAGTATAGCGAGGGT
CCGGATAATGAAATGGTTTCCAGTTTGGCATTGCAGATGTCACTTTATTTTAACACTTAC
TTTTTCCCACTTTGGTGGGTGAGCAGCGTTATGATGCTTCAGATGAAGTATTCAATCTTG
CCTGATTACTACAAATTCATTGTGGTCACTGTTATCATCTTGATAACCTTAATTGAAGCA
ATCAGGTTATATCTGGGCTACATGGGGAACCTGCAGGAGAAGGTTCCTGAGTTGGCTGGC
TTTTGGCTTTTGAGCCTTTTATTGCAGTTGCCTTTAATTCTTTTCTTGCTCTTTAATGAA
GGCCTAACAAATCTGCCCTTGGAAAAAGCAGTACATATCATCTTCACTATATTCCTTACT
TTCCAAGTTGTTTCCGCATTTCTTACCCTAAGGAAAATGGTAAATCAGTTGGCAACTCGT
TTCCATCTTCAAGACTTTGACCAGCTCTCTACAAGCAGAGGAAGCATGAGAAGAATGAGA
CCCTGTATAGAAGAGATTTGACCTAGTGCTTTTTTCAGAGTGAAAATCTGAAAGATCATT
CTAGAAGACTGTGGGAGTTAGGAAATTTGCAAAGAAGGCTAGCATGAGAAAAGGACAAAG
CAAGTGTTTTGAATTGTGTACTCTCAGAGTTCTCTTGTGGCATACCAGTTTGAAGATACA
GCATTGTCACTGCAGCAGGTTGGTCCACTGCTATGGCACAGGTTCATTCCCTGGCCTGGG
AACTTCCGCATGCCTGCCAGCCCAGCCCAAAAAAACAAAAAAAAGCTGAATTGTATACTC
TCTAGCTCTGAAAGGCCAAGGTTGTACAGTACATGAAAGCAATAAATCAGCCCTAAAGCC
TAGATGTTATCTACCTGATGCCAAATATCTTAATTTCATTGTTGTCAACTTTTTCCGATG
TGTAGAAATCTGTATTGGTGGTATTACATACATCTTTACTGTAATATTTCTAGTTAGTAC
CTGTAACTAGAAATGTGTGTATTTCTTTTTATCTTGTTGGCTGTCCGTATCTTAGCGGTA
CATCTGAAGCACATGGAAATGCTTGTCAATATTCTGATATATTAGACTACATTTGTAAGC
TAAGACACCAACTTTTCCTGTCTGCTAGGGTCTTGGCTGTTATACTGAGGTTAAGAAGAA
AACAGGTACATTACCATGGTATTTAGGAAGTATTTTTATCCTAAAATTGTAACTTTCAGA
AACCACATTCAGTATTTATGGCAGTAGTGTGCAAAATGTCTTTGCAATAAATTATAAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGAGCAGTACTGAGGCCTGAGCATGGAGCTGCCGGATCCGGTCCGCCAGCGGCTGGGA
AACTTCAGCCGGACCGTGTTCAGCGACTCCAACCGGACCGGGCCGGAGTATAGCGAGGGT
CCGGATAATGAAATGGTTTCCAGTTTGGCATTGCAGATGTCACTTTATTTTAACACTTAC
TTTTTCCCACTTTGGTGGGTGAGCAGCGTTATGATGCTTCAGATGAAGTATTCAATCTTG
CCTGATTACTACAAATTCATTGTGGTCACTGTTATCATCTTGATAACCTTAATTGAAGCA
ATCAGGTTATATCTGGGCTACATGGGGAACCTGCAGGAGAAGGTTCCTGAGTTGGCTGGC
TTTTGGCTTTTGAGCCTTTTATTGCAGTTGCCTTTAATTCTTTTCTTGCTCTTTAATGAA
GGCCTAACAAATCTGCCCTTGGAAAAAGCAGTACATATCATCTTCACTATATTCCTTACT
TTCCAAGTTGTTTCCGCATTTCTTACCCTAAGGAAAATGGTAAATCAGTTGGCAACTCGT
TTCCATCTTCAAGACTTTGACCAGCTCTCTACAAGCAGAGGAAGCATGAGAAGAATGAGA
CCCTGTATAGAAGAGATTTGACCTAGTGCTTTTTTCAGAGTGAAAATCTGAAAGATCATT
CTAGAAGACTGTGGGAGTTAGGAAATTTGCAAAGAAGGCTAGCATGAGAAAAGGACAAAG
CAAGTGTTTTGAATTGTGTACTCTCAGAGTTCTCTTGTGGCATACCAGTTTGAAGATACA
GCATTGTCACTGCAGCAGGTTGGTCCACTGCTATGGCACAGGTTCATTCCCTGGCCTGGG
AACTTCCGCATGCCTGCCAGCCCAGCCCAAAAAAACAAAAAAAAGCTGAATTGTATACTC
TCTAGCTCTGAAAGGCCAAGGTTGTACAGTACATGAAAGCAATAAATCAGCCCTAAAGCC
TAGATGTTATCTACCTGATGCCAAATATCTTAATTTCATTGTTGTCAACTTTTTCCGATG
TGTAGAAATCTGTATTGGTGGTATTACATACATCTTTACTGTAATATTTCTAGTTAGTAC
CTGTAACTAGAAATGTGTGTATTTCTTTTTATCTTGTTGGCTGTCCGTATCTTAGCGGTA
CATCTGAAGCACATGGAAATGCTTGTCAATATTCTGATATATTAGACTACATTTGTAAGC
TAAGACACCAACTTTTCCTGTCTGCTAGGGTCTTGGCTGTTATACTGAGGTTAAGAAGAA
AACAGGTACATTACCATGGTATTTAGGAAGTATTTTTATCCTAAAATTGTAACTTTCAGA
AACCACATTCAGTATTTATGGCAGTAGTGTGCAAAATGTCTTTGCAATAAATTATAAAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q86X19_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q86X19_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               999-1150, + strand, RNAz p=0.988606

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               999-1150, + strand, RNAz p=0.988606

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               4-124, gnl|bosTau2|chr11 (40858862-40858742)
               

               
               4-124, gnl|Hg17|chr2 (62644936-62644816)
               

               
               4-124, gnl|Mm7|chr11 (22464469-22464592)
               


               
               341-744, gnl|bosTau2|chr11 (40852082-40851691)
               

               
               341-744, gnl|Hg17|chr2 (62640275-62639883)
               

               
               341-744, gnl|Mm7|chr11 (22470388-22470796)
               


               
               923-1380, gnl|bosTau2|chr11 (40851647-40851196)
               

               
               923-1380, gnl|Hg17|chr2 (62639841-62639025)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-124, gnl|bosTau2|chr11 (40858862-40858742)
               

               
               4-124, gnl|Hg17|chr2 (62644936-62644816)
               

               
               4-124, gnl|Mm7|chr11 (22464469-22464592)
               


               
               341-744, gnl|bosTau2|chr11 (40852082-40851691)
               

               
               341-744, gnl|Hg17|chr2 (62640275-62639883)
               

               
               341-744, gnl|Mm7|chr11 (22470388-22470796)
               


               
               923-1380, gnl|bosTau2|chr11 (40851647-40851196)
               

               
               923-1380, gnl|Hg17|chr2 (62639841-62639025)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               pro (0.512033)
               

               
               tra (0.246184)
               

               
               pgl (0.236967)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               mga (0.160205)
               

               
               bla (0.124347)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               tra (0.246184)
               

               
               pgl (0.236967)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               mga (0.160205)
               

               
               bla (0.124347)

	4-124, gnl\|bosTau2\|chr11 (40858862-40858742)
	4-124, gnl\|Hg17\|chr2 (62644936-62644816)
	4-124, gnl\|Mm7\|chr11 (22464469-22464592)

	341-744, gnl\|bosTau2\|chr11 (40852082-40851691)
	341-744, gnl\|Hg17\|chr2 (62640275-62639883)
	341-744, gnl\|Mm7\|chr11 (22470388-22470796)

	923-1380, gnl\|bosTau2\|chr11 (40851647-40851196)
	923-1380, gnl\|Hg17\|chr2 (62639841-62639025)

	pro (0.512033)
	tra (0.246184)
	pgl (0.236967)
	sag (0.182715)
	mgm (0.180343)
	mga (0.160205)
	bla (0.124347)