Non-Coding RNA Search

Ss1.1-Pig4-TMW8067N15.3

Sequence:


               
               GGCAGCGCAAAGCCGGGGGCCTTGGCCTCCTTGCCGGGCTGGGGCAGCTGTGACTGCAGT
GGGAGCCCGTCATCTGGGACATTGTGCTTGTGGCTGATCTGGCTGTAGCTATAGTAGACC
TTCTGCTCCCGGCCCGTCATGTCTATGACCTTGGAGAAGGCGGCAGAGGGGATGCAGGTT
ATTAACACTTAGCACTGCTGCCCTACTAGACACACACCTAAGCCCAAGGAAGGCGAGGTG
CTGGTGGGAAAGCATAGAAACTAGGCCATTCAGCAGACCTGGAGAAGGGCAGTGTTCATC
AAAGTGAGGCCTGGGCTGCATGACGTCAGAAGGATGGAACAATCAGATGCAACGGGCGGT
TCTGGACTAGGTCCCTCAGGACAAACCAGATGGAAGAGACTTTGTAGGACAACTGCTAAA
ATTTGAGTATGGACAATTAAGTTGATGAAAATATGTTGCCATGGAAACGCACAAGCTATA
CGGACCAAAACAGGCAATAAGACACCATATACCATTAAAATGTCATTTGGGTAAAAAACA
TGCATATTTAGACAAAAAGATCTGGAAGGATGTATATCATTGGTCATTTACGGGAAGGAA
AATATTTTTAATAGTTTTGCCTCTGTATTTCCTAATTTTCTAAAATGTATTGCATGTTGC
TCTGTAATAGCTTTTTTTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAGCGCAAAGCCGGGGGCCTTGGCCTCCTTGCCGGGCTGGGGCAGCTGTGACTGCAGT
GGGAGCCCGTCATCTGGGACATTGTGCTTGTGGCTGATCTGGCTGTAGCTATAGTAGACC
TTCTGCTCCCGGCCCGTCATGTCTATGACCTTGGAGAAGGCGGCAGAGGGGATGCAGGTT
ATTAACACTTAGCACTGCTGCCCTACTAGACACACACCTAAGCCCAAGGAAGGCGAGGTG
CTGGTGGGAAAGCATAGAAACTAGGCCATTCAGCAGACCTGGAGAAGGGCAGTGTTCATC
AAAGTGAGGCCTGGGCTGCATGACGTCAGAAGGATGGAACAATCAGATGCAACGGGCGGT
TCTGGACTAGGTCCCTCAGGACAAACCAGATGGAAGAGACTTTGTAGGACAACTGCTAAA
ATTTGAGTATGGACAATTAAGTTGATGAAAATATGTTGCCATGGAAACGCACAAGCTATA
CGGACCAAAACAGGCAATAAGACACCATATACCATTAAAATGTCATTTGGGTAAAAAACA
TGCATATTTAGACAAAAAGATCTGGAAGGATGTATATCATTGGTCATTTACGGGAAGGAA
AATATTTTTAATAGTTTTGCCTCTGTATTTCCTAATTTTCTAAAATGTATTGCATGTTGC
TCTGTAATAGCTTTTTTTTTTTTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               174-290, - strand, RNAz p=0.704606

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               174-290, - strand, RNAz p=0.704606

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-290, gnl|bosTau2|chr14 (9531068-9531360)
               

               
               1-290, gnl|canFam2|chr26 (23211344-23211593)
               

               
               1-290, gnl|dasNov1|scaffold_17729 (11533-11782)
               

               
               1-290, gnl|echTel1|scaffold_155887 (2533-2750)
               

               
               1-290, gnl|fr1|chrUn (1470756-1470977)
               

               
               1-290, gnl|galGal2|chr15 (7118995-7119223)
               

               
               1-290, gnl|hg17|chr22 (25219937-25220183)
               

               
               1-290, gnl|Hg17|chr22 (25220000-25220282)
               

               
               1-290, gnl|mm7|chr5 (111519683-111519446)
               

               
               1-290, gnl|monDom2|scaffold_151 (1569426-1569642)
               

               
               1-290, gnl|oryCun1|scaffold_202883 (82104-82348)
               

               
               1-290, gnl|panTro1|chr23 (25302771-25303017)
               

               
               1-290, gnl|rheMac2|chr10 (70338093-70338339)
               

               
               1-290, gnl|rn3|chr19 (14319161-14318924)
               

               
               1-290, gnl|tetNig1|chr12 (6037597-6037825)
               

               
               1-290, gnl|xenTro1|scaffold_76 (99913-100141)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-290, gnl|bosTau2|chr14 (9531068-9531360)
               

               
               1-290, gnl|canFam2|chr26 (23211344-23211593)
               

               
               1-290, gnl|dasNov1|scaffold_17729 (11533-11782)
               

               
               1-290, gnl|echTel1|scaffold_155887 (2533-2750)
               

               
               1-290, gnl|fr1|chrUn (1470756-1470977)
               

               
               1-290, gnl|galGal2|chr15 (7118995-7119223)
               

               
               1-290, gnl|hg17|chr22 (25219937-25220183)
               

               
               1-290, gnl|Hg17|chr22 (25220000-25220282)
               

               
               1-290, gnl|mm7|chr5 (111519683-111519446)
               

               
               1-290, gnl|monDom2|scaffold_151 (1569426-1569642)
               

               
               1-290, gnl|oryCun1|scaffold_202883 (82104-82348)
               

               
               1-290, gnl|panTro1|chr23 (25302771-25303017)
               

               
               1-290, gnl|rheMac2|chr10 (70338093-70338339)
               

               
               1-290, gnl|rn3|chr19 (14319161-14318924)
               

               
               1-290, gnl|tetNig1|chr12 (6037597-6037825)
               

               
               1-290, gnl|xenTro1|scaffold_76 (99913-100141)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               nep (0.183925)
               

               
               sto (0.179824)
               

               
               fhi (0.169578)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               sto (0.179824)
               

               
               fhi (0.169578)
               

               
               ecc (0.115035)

	1-290, gnl\|bosTau2\|chr14 (9531068-9531360)
	1-290, gnl\|canFam2\|chr26 (23211344-23211593)
	1-290, gnl\|dasNov1\|scaffold_17729 (11533-11782)
	1-290, gnl\|echTel1\|scaffold_155887 (2533-2750)
	1-290, gnl\|fr1\|chrUn (1470756-1470977)
	1-290, gnl\|galGal2\|chr15 (7118995-7119223)
	1-290, gnl\|hg17\|chr22 (25219937-25220183)
	1-290, gnl\|Hg17\|chr22 (25220000-25220282)
	1-290, gnl\|mm7\|chr5 (111519683-111519446)
	1-290, gnl\|monDom2\|scaffold_151 (1569426-1569642)
	1-290, gnl\|oryCun1\|scaffold_202883 (82104-82348)
	1-290, gnl\|panTro1\|chr23 (25302771-25303017)
	1-290, gnl\|rheMac2\|chr10 (70338093-70338339)
	1-290, gnl\|rn3\|chr19 (14319161-14318924)
	1-290, gnl\|tetNig1\|chr12 (6037597-6037825)
	1-290, gnl\|xenTro1\|scaffold_76 (99913-100141)