Non-Coding RNA Search

Ss1.1-Pig4-TMW8067N21.3

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTGCCCTGGGTGATGAGTTTCATCTGGCCAAGAAAAGCATC
AAGTGACTAGAAAGCATCATGCTTTAGATCTCCAGGCTGTTTTCTGTAATACTGGGGAAA
GGGGAACTATTTATTCTGCCTTAAAAGGATGGCAAATAAGTGAAGATGACATTTTGTGAA
TGTAGACTCTGGATAGACTCCTAATAGTAGTCATTAAAGGAGATCGAGTAGATGTTTTTT
TCTGTTCTGTAAGCAATCCTTTTTTTCCTGTGTCCTATTGAGTATGGCTAGCAATTATTT
ATTTACATGCTAGATGCTCCTCTGCATGCAGATTCCATGTTAAGTGCAGAAATTTCCTCA
GCCCCTGGAGATATTTTGACCATGTTGTCATTTGGATGAGCTGTCGTTAGATTGGAATTT
ACACATCATTTCATTACAAATTGTGCCTTAGAAAATGCAAAGCTGTTGCACACAGTCGGT
GATGAATTATGGATGCAGTACTTTGAAGAGAAGTGAAGTCACTTCCAAGGTCTCAAGACT
TCCCATAGAGGTGTTCGCTGTTTTACAAGGGGGGAGGGGGAGATTAAAAAAAAGAAAAAT
AGAAAAACTAAAAAAAAAGTTTTGCAAATGTACAGATTAAGTCCAATATTTTGATTAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTGCCCTGGGTGATGAGTTTCATCTGGCCAAGAAAAGCATC
AAGTGACTAGAAAGCATCATGCTTTAGATCTCCAGGCTGTTTTCTGTAATACTGGGGAAA
GGGGAACTATTTATTCTGCCTTAAAAGGATGGCAAATAAGTGAAGATGACATTTTGTGAA
TGTAGACTCTGGATAGACTCCTAATAGTAGTCATTAAAGGAGATCGAGTAGATGTTTTTT
TCTGTTCTGTAAGCAATCCTTTTTTTCCTGTGTCCTATTGAGTATGGCTAGCAATTATTT
ATTTACATGCTAGATGCTCCTCTGCATGCAGATTCCATGTTAAGTGCAGAAATTTCCTCA
GCCCCTGGAGATATTTTGACCATGTTGTCATTTGGATGAGCTGTCGTTAGATTGGAATTT
ACACATCATTTCATTACAAATTGTGCCTTAGAAAATGCAAAGCTGTTGCACACAGTCGGT
GATGAATTATGGATGCAGTACTTTGAAGAGAAGTGAAGTCACTTCCAAGGTCTCAAGACT
TCCCATAGAGGTGTTCGCTGTTTTACAAGGGGGGAGGGGGAGATTAAAAAAAAGAAAAAT
AGAAAAACTAAAAAAAAAGTTTTGCAAATGTACAGATTAAGTCCAATATTTTGATTAACC

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               12-660, gnl|bosTau2|chr6 (31043465-31044115)
               

               
               12-660, gnl|Hg17|chr4 (41541351-41542009)
               

               
               12-660, gnl|Mm7|chr5 (66411026-66411688)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-660, gnl|bosTau2|chr6 (31043465-31044115)
               

               
               12-660, gnl|Hg17|chr4 (41541351-41542009)
               

               
               12-660, gnl|Mm7|chr5 (66411026-66411688)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               sug (0.254582)
               

               
               mas (0.210305)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               jca (0.11396)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.254582)
               

               
               mas (0.210305)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               jca (0.11396)

	12-660, gnl\|bosTau2\|chr6 (31043465-31044115)
	12-660, gnl\|Hg17\|chr4 (41541351-41542009)
	12-660, gnl\|Mm7\|chr5 (66411026-66411688)

	sug (0.254582)
	mas (0.210305)
	liv (0.146284)
	hyp (0.142837)
	nca (0.136874)
	jca (0.11396)