Ss1.1-Pig4-TMW8067N22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTATGGTCAGCCTCGGACACGAAGGCCCTGGAAGAAAATTCTAATCCTTGTGGAGGGAA TATATAGCATGGAGGGATCTATTGTTCGCCTTCCTGAAGTGATTGCCCTTAAGAAGAAAT ACAAGGCATACTTGTATCTAGATGAAGCTCACAGCATTGGGGCTCTGGGCCCCACAGGTC GAGGTGTGGTGGACTACTTCGGCCTGGATCCTGAGGACGTGGACATTATGATGGGAACAT TTACAAAGAGCTTTGGTGCTTCTGGAGGATACATTGGAGGCAAGAAGGAGCTGATTGACT ATCTGCGGACACATTCTCACAGTGCCGTGTACGCCACGTCGCTGTCGCCACCTGTCGTGG AGCAGATCATCACCTCTATGAAGTGCATCATGGGGCAGGATGGCACCACCCTTGGCAAAG AATGTATACAGCAGTTAGCCGAAAACACCAGGTATTTCAGGAGACGTCTAAAAGAGATGG GCTTCATCATCTATGGAAATGAAGATTCTCCAGTTGTGCCTCTGATGCTCTACATGCCGG CCAAAATTGGCGCCTTTGGGCGGGAGATGCTAAAGCGGAATGTCGGTGTCGTTGTGGTAG GATTTCCTGCTACCCCAATCATCGAGTCCAGAGCCAGGTTTTGCCTGTCGGCAGCTCATA CCAAAGAAATACTTGATACTGCTTTAAAGGAGATAGATGAAGTCGGGGACCTGTTGCAGC TGAAGTATTCCCGTCATCGGTTGGTACCCCTACTGGACAGGCCCTTTGATGAGACTACAT ATGAAGAAACAGAAGACTGAGCCTTTTTGGTGCTCCCCTTGAGGGCCTCTCCCGCCCCCA GGACAGCGTGTGGCCTTTCTGAGCCAGTTCCAGGAACCACACTTCTGTGGCCGACTCACG TGCAAGACATTTCCTCAACTACTGACGGTGGCCACCTCCACTCTAAATGGCATTTTGTAA ATAGAAACTGCTTCACATCCTTCCTTTGCTACAGTTCACCGTTTAAAAAAGAGGTGACTC ACTTTGCTTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTATGGTCAGCCTCGGACACGAAGGCCCTGGAAGAAAATTCTAATCCTTGTGGAGGGAA TATATAGCATGGAGGGATCTATTGTTCGCCTTCCTGAAGTGATTGCCCTTAAGAAGAAAT ACAAGGCATACTTGTATCTAGATGAAGCTCACAGCATTGGGGCTCTGGGCCCCACAGGTC GAGGTGTGGTGGACTACTTCGGCCTGGATCCTGAGGACGTGGACATTATGATGGGAACAT TTACAAAGAGCTTTGGTGCTTCTGGAGGATACATTGGAGGCAAGAAGGAGCTGATTGACT ATCTGCGGACACATTCTCACAGTGCCGTGTACGCCACGTCGCTGTCGCCACCTGTCGTGG AGCAGATCATCACCTCTATGAAGTGCATCATGGGGCAGGATGGCACCACCCTTGGCAAAG AATGTATACAGCAGTTAGCCGAAAACACCAGGTATTTCAGGAGACGTCTAAAAGAGATGG GCTTCATCATCTATGGAAATGAAGATTCTCCAGTTGTGCCTCTGATGCTCTACATGCCGG CCAAAATTGGCGCCTTTGGGCGGGAGATGCTAAAGCGGAATGTCGGTGTCGTTGTGGTAG GATTTCCTGCTACCCCAATCATCGAGTCCAGAGCCAGGTTTTGCCTGTCGGCAGCTCATA CCAAAGAAATACTTGATACTGCTTTAAAGGAGATAGATGAAGTCGGGGACCTGTTGCAGC TGAAGTATTCCCGTCATCGGTTGGTACCCCTACTGGACAGGCCCTTTGATGAGACTACAT ATGAAGAAACAGAAGACTGAGCCTTTTTGGTGCTCCCCTTGAGGGCCTCTCCCGCCCCCA GGACAGCGTGTGGCCTTTCTGAGCCAGTTCCAGGAACCACACTTCTGTGGCCGACTCACG TGCAAGACATTTCCTCAACTACTGACGGTGGCCACCTCCACTCTAAATGGCATTTTGTAA ATAGAAACTGCTTCACATCCTTCCTTTGCTACAGTTCACCGTTTAAAAAAGAGGTGACTC ACTTTGCTTTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 66-533, + strand, RNAz p=0.918907 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 66-533, + strand, RNAz p=0.918907 |
| Aligned organism(s): 90 entry(ies) | More info |
| Aligned organism(s): 90 entry(ies) | Help | Less info |
| 66-288, gnl|bosTau2|chr10 (61336966-61336744) | |
| 66-288, gnl|canFam2|chr8 (53387343-53387589) | |
| 66-288, gnl|canFam2|chr8 (53387351-53387574) | |
| 66-288, gnl|canFam2|chr8 (53387351-53387574) | |
| 66-288, gnl|danRer3|chr17 (13204667-13204913) | |
| 66-288, gnl|danRer3|chr17 (13204669-13204892) | |
| 66-288, gnl|danRer3|chr17 (13204669-13204892) | |
| 66-288, gnl|dasNov1|scaffold_33940 (3393-3145) | |
| 66-288, gnl|dasNov1|scaffold_33940 (3385-3162) | |
| 66-288, gnl|dasNov1|scaffold_33940 (3385-3162) | |
| 66-288, gnl|echTel1|scaffold_286290 (102863-103110) | |
| 66-288, gnl|echTel1|scaffold_286290 (102872-103091) | |
| 66-288, gnl|echTel1|scaffold_286290 (102872-103091) | |
| 66-288, gnl|fr1|chrUn (12598096-12598344) | |
| 66-288, gnl|fr1|chrUn (12598097-12598313) | |
| 66-288, gnl|fr1|chrUn (12598097-12598313) | |
| 66-288, gnl|galGal2|chr5 (36135279-36135524) | |
| 66-288, gnl|hg17|chr14 (77091388-77091638) | |
| 66-288, gnl|Hg17|chr14 (77091617-77091395) | |
| 66-288, gnl|hg17|chr6 (167986792-167987011) | |
| 66-288, gnl|hg17|chr6_random (754921-755140) | |
| 66-288, gnl|mm7|chr12 (85344174-85344431) | |
| 66-288, gnl|mm7|chr12 (85344183-85344399) | |
| 66-288, gnl|mm7|chr12 (85344183-85344399) | |
| 66-288, gnl|Mm7|chr12 (85344404-85344182) | |
| 66-288, gnl|monDom2|scaffold_8 (55860749-55860502) | |
| 66-288, gnl|monDom2|scaffold_8 (55860741-55860519) | |
| 66-288, gnl|monDom2|scaffold_8 (55860741-55860519) | |
| 66-288, gnl|oryCun1|scaffold_119136 (10080-9841) | |
| 66-288, gnl|oryCun1|scaffold_119136 (10080-9857) | |
| 66-288, gnl|oryCun1|scaffold_119136 (10080-9857) | |
| 66-288, gnl|panTro1|chr15 (77151769-77152019) | |
| 66-288, gnl|panTro1|chr5 (172419034-172419253) | |
| 66-288, gnl|panTro1|chr5 (172419034-172419253) | |
| 66-288, gnl|rheMac2|chr4 (164683567-164683787) | |
| 66-288, gnl|rheMac2|chr4 (164683567-164683787) | |
| 66-288, gnl|rheMac2|chr7 (140707699-140707948) | |
| 66-288, gnl|rn3|chr6 (111574423-111574674) | |
| 66-288, gnl|rn3|chr6 (111574432-111574655) | |
| 66-288, gnl|rn3|chr6 (111574432-111574655) | |
| 66-288, gnl|tetNig1|chr14 (8194850-8195099) | |
| 66-288, gnl|tetNig1|chr14 (8194852-8195075) | |
| 66-288, gnl|tetNig1|chr14 (8194852-8195075) | |
| 66-288, gnl|xenTro1|scaffold_170 (418635-418869) | |
| 66-288, gnl|xenTro1|scaffold_170 (418638-418854) | |
| 66-288, gnl|xenTro1|scaffold_170 (418638-418854) | |
| 414-557, gnl|bosTau2|chr10 (61301541-61301398) | |
| 414-557, gnl|canFam2|chr8 (53343578-53343758) | |
| 414-557, gnl|canFam2|chr8 (53343588-53343721) | |
| 414-557, gnl|canFam2|chr8 (53343588-53343721) | |
| 414-557, gnl|danRer3|chr15 (8203190-8203367) | |
| 414-557, gnl|dasNov1|scaffold_43763 (10616-10803) | |
| 414-557, gnl|dasNov1|scaffold_43763 (10626-10753) | |
| 414-557, gnl|dasNov1|scaffold_43763 (10626-10753) | |
| 414-557, gnl|echTel1|scaffold_308517 (200943-201085) | |
| 414-557, gnl|echTel1|scaffold_308517 (200952-201085) | |
| 414-557, gnl|echTel1|scaffold_308517 (200952-201085) | |
| 414-557, gnl|fr1|chrUn (12595954-12596131) | |
| 414-557, gnl|galGal2|chr5 (36107029-36107222) | |
| 414-557, gnl|galGal2|chr5 (36107040-36107173) | |
| 414-557, gnl|galGal2|chr5 (36107040-36107173) | |
| 414-557, gnl|hg17|chr14 (77057536-77057722) | |
| 414-557, gnl|Hg17|chr14 (77057678-77057538) | |
| 414-557, gnl|hg17|chr6 (167986566-167986672) | |
| 414-557, gnl|hg17|chr6_random (754695-754801) | |
| 414-557, gnl|loxAfr1|scaffold_7227 (37833-37988) | |
| 414-557, gnl|mm7|chr12 (85316691-85316864) | |
| 414-557, gnl|mm7|chr12 (85316733-85316834) | |
| 414-557, gnl|mm7|chr12 (85316733-85316834) | |
| 414-557, gnl|Mm7|chr12 (85316833-85316690) | |
| 414-557, gnl|monDom2|scaffold_8 (55934500-55934324) | |
| 414-557, gnl|monDom2|scaffold_8 (55934490-55934363) | |
| 414-557, gnl|monDom2|scaffold_8 (55934490-55934363) | |
| 414-557, gnl|oryCun1|scaffold_119136 (25311-25131) | |
| 414-557, gnl|oryCun1|scaffold_119136 (25301-25168) | |
| 414-557, gnl|oryCun1|scaffold_119136 (25301-25168) | |
| 414-557, gnl|panTro1|chr15 (77121598-77121784) | |
| 414-557, gnl|panTro1|chr5 (172418808-172418914) | |
| 414-557, gnl|panTro1|chr5 (172418808-172418914) | |
| 414-557, gnl|rheMac2|chr4 (164683332-164683450) | |
| 414-557, gnl|rheMac2|chr4 (164683332-164683450) | |
| 414-557, gnl|rheMac2|chr7 (140672089-140672275) | |
| 414-557, gnl|rn3|chr6 (111550725-111550898) | |
| 414-557, gnl|rn3|chr6 (111550735-111550868) | |
| 414-557, gnl|rn3|chr6 (111550735-111550868) | |
| 414-557, gnl|tetNig1|chr14 (8193088-8193278) | |
| 414-557, gnl|xenTro1|scaffold_170 (407986-408148) | |
| 681-1032, gnl|bosTau2|chr10 (61291951-61291588) | |
| 681-1032, gnl|Hg17|chr14 (77048499-77048145) | |
| 681-1032, gnl|Mm7|chr12 (85312666-85312311) |
| Aligned organism(s): 90 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 66-288, gnl|bosTau2|chr10 (61336966-61336744) | |
| 66-288, gnl|canFam2|chr8 (53387343-53387589) | |
| 66-288, gnl|canFam2|chr8 (53387351-53387574) | |
| 66-288, gnl|canFam2|chr8 (53387351-53387574) | |
| 66-288, gnl|danRer3|chr17 (13204667-13204913) | |
| 66-288, gnl|danRer3|chr17 (13204669-13204892) | |
| 66-288, gnl|danRer3|chr17 (13204669-13204892) | |
| 66-288, gnl|dasNov1|scaffold_33940 (3393-3145) | |
| 66-288, gnl|dasNov1|scaffold_33940 (3385-3162) | |
| 66-288, gnl|dasNov1|scaffold_33940 (3385-3162) | |
| 66-288, gnl|echTel1|scaffold_286290 (102863-103110) | |
| 66-288, gnl|echTel1|scaffold_286290 (102872-103091) | |
| 66-288, gnl|echTel1|scaffold_286290 (102872-103091) | |
| 66-288, gnl|fr1|chrUn (12598096-12598344) | |
| 66-288, gnl|fr1|chrUn (12598097-12598313) | |
| 66-288, gnl|fr1|chrUn (12598097-12598313) | |
| 66-288, gnl|galGal2|chr5 (36135279-36135524) | |
| 66-288, gnl|hg17|chr14 (77091388-77091638) | |
| 66-288, gnl|Hg17|chr14 (77091617-77091395) | |
| 66-288, gnl|hg17|chr6 (167986792-167987011) | |
| 66-288, gnl|hg17|chr6_random (754921-755140) | |
| 66-288, gnl|mm7|chr12 (85344174-85344431) | |
| 66-288, gnl|mm7|chr12 (85344183-85344399) | |
| 66-288, gnl|mm7|chr12 (85344183-85344399) | |
| 66-288, gnl|Mm7|chr12 (85344404-85344182) | |
| 66-288, gnl|monDom2|scaffold_8 (55860749-55860502) | |
| 66-288, gnl|monDom2|scaffold_8 (55860741-55860519) | |
| 66-288, gnl|monDom2|scaffold_8 (55860741-55860519) | |
| 66-288, gnl|oryCun1|scaffold_119136 (10080-9841) | |
| 66-288, gnl|oryCun1|scaffold_119136 (10080-9857) | |
| 66-288, gnl|oryCun1|scaffold_119136 (10080-9857) | |
| 66-288, gnl|panTro1|chr15 (77151769-77152019) | |
| 66-288, gnl|panTro1|chr5 (172419034-172419253) | |
| 66-288, gnl|panTro1|chr5 (172419034-172419253) | |
| 66-288, gnl|rheMac2|chr4 (164683567-164683787) | |
| 66-288, gnl|rheMac2|chr4 (164683567-164683787) | |
| 66-288, gnl|rheMac2|chr7 (140707699-140707948) | |
| 66-288, gnl|rn3|chr6 (111574423-111574674) | |
| 66-288, gnl|rn3|chr6 (111574432-111574655) | |
| 66-288, gnl|rn3|chr6 (111574432-111574655) | |
| 66-288, gnl|tetNig1|chr14 (8194850-8195099) | |
| 66-288, gnl|tetNig1|chr14 (8194852-8195075) | |
| 66-288, gnl|tetNig1|chr14 (8194852-8195075) | |
| 66-288, gnl|xenTro1|scaffold_170 (418635-418869) | |
| 66-288, gnl|xenTro1|scaffold_170 (418638-418854) | |
| 66-288, gnl|xenTro1|scaffold_170 (418638-418854) | |
| 414-557, gnl|bosTau2|chr10 (61301541-61301398) | |
| 414-557, gnl|canFam2|chr8 (53343578-53343758) | |
| 414-557, gnl|canFam2|chr8 (53343588-53343721) | |
| 414-557, gnl|canFam2|chr8 (53343588-53343721) | |
| 414-557, gnl|danRer3|chr15 (8203190-8203367) | |
| 414-557, gnl|dasNov1|scaffold_43763 (10616-10803) | |
| 414-557, gnl|dasNov1|scaffold_43763 (10626-10753) | |
| 414-557, gnl|dasNov1|scaffold_43763 (10626-10753) | |
| 414-557, gnl|echTel1|scaffold_308517 (200943-201085) | |
| 414-557, gnl|echTel1|scaffold_308517 (200952-201085) | |
| 414-557, gnl|echTel1|scaffold_308517 (200952-201085) | |
| 414-557, gnl|fr1|chrUn (12595954-12596131) | |
| 414-557, gnl|galGal2|chr5 (36107029-36107222) | |
| 414-557, gnl|galGal2|chr5 (36107040-36107173) | |
| 414-557, gnl|galGal2|chr5 (36107040-36107173) | |
| 414-557, gnl|hg17|chr14 (77057536-77057722) | |
| 414-557, gnl|Hg17|chr14 (77057678-77057538) | |
| 414-557, gnl|hg17|chr6 (167986566-167986672) | |
| 414-557, gnl|hg17|chr6_random (754695-754801) | |
| 414-557, gnl|loxAfr1|scaffold_7227 (37833-37988) | |
| 414-557, gnl|mm7|chr12 (85316691-85316864) | |
| 414-557, gnl|mm7|chr12 (85316733-85316834) | |
| 414-557, gnl|mm7|chr12 (85316733-85316834) | |
| 414-557, gnl|Mm7|chr12 (85316833-85316690) | |
| 414-557, gnl|monDom2|scaffold_8 (55934500-55934324) | |
| 414-557, gnl|monDom2|scaffold_8 (55934490-55934363) | |
| 414-557, gnl|monDom2|scaffold_8 (55934490-55934363) | |
| 414-557, gnl|oryCun1|scaffold_119136 (25311-25131) | |
| 414-557, gnl|oryCun1|scaffold_119136 (25301-25168) | |
| 414-557, gnl|oryCun1|scaffold_119136 (25301-25168) | |
| 414-557, gnl|panTro1|chr15 (77121598-77121784) | |
| 414-557, gnl|panTro1|chr5 (172418808-172418914) | |
| 414-557, gnl|panTro1|chr5 (172418808-172418914) | |
| 414-557, gnl|rheMac2|chr4 (164683332-164683450) | |
| 414-557, gnl|rheMac2|chr4 (164683332-164683450) | |
| 414-557, gnl|rheMac2|chr7 (140672089-140672275) | |
| 414-557, gnl|rn3|chr6 (111550725-111550898) | |
| 414-557, gnl|rn3|chr6 (111550735-111550868) | |
| 414-557, gnl|rn3|chr6 (111550735-111550868) | |
| 414-557, gnl|tetNig1|chr14 (8193088-8193278) | |
| 414-557, gnl|xenTro1|scaffold_170 (407986-408148) | |
| 681-1032, gnl|bosTau2|chr10 (61291951-61291588) | |
| 681-1032, gnl|Hg17|chr14 (77048499-77048145) | |
| 681-1032, gnl|Mm7|chr12 (85312666-85312311) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.143184) | |
| pla (0.133672) |