Non-Coding RNA Search

Ss1.1-Pig4-TMW8067O15.3

Sequence:


               
               TCTGGCCCGCCTGGCCCTGACGGCGCCCCCCGAGGCCCTGCTCATGGTCCTGCCCTTTAT
CTGCAACTTGCTGCGCAGACACCCAGCCTGCCGCGTCCTTGTGCACCGCCCAAGGGGCCC
TGAGCTGGATGCTGACCCCTATGACCCTGAAGAGGAGGATCCTGCCCAGAGCAGAGCCCT
GGAGAGCTCCCTGTGGGAGCTGCAGGCTCTCCAGCAGCATTACCACCCTGAGGTGTCCAA
GGCTGCCAGCGTCATCAACCAGGCACTGTCTGTGCCTGAGGCCAGCATCGCGCCACTCCT
GGAGCTCACTGCCTTTGAGATCTTCGAGAGGGACCTGAAGAAGAAGGGGCCTGAGTCGGT
GCCTCTGGAGTTCATCCCGGCCCAGGGCCTCTTGGGCCGGCGGGATGACCTCTGTGCCCA
ACACTTCACGCTGAGCTGACCCGGAGCCCTTGCTCCCCTGGATGGATGGTTTGGGAGGAG
AGCTGCTTGGGTGGGCTGGTGGGCGGGGGTCCAGGGAGGCACAGGTCCTTTTCCCCAGCC
CTTCCTGCCAAAGAAGCAGCACCTGCCCTGGGTCTCCTCTGCGACCCTGTGCTGCATGAG
CTGGCGTGGTCTGAGTGCTGTCTGTCTTTGGGGTGGAGTTAGCTTCTTAAAGACAGTGTC
ATGTATGCCTTGTGCACGAGTGTCGTGGAGCCCAGGACGGTGGCCAACACCTATTGCGCC
TCAGCGCGTGTCAGTTTTCTCCATCAAACCTCGTGGAAGTGGCTTTACGGGATCTGGCCT
CAGGTGCCTGGGGCTCCTCCCACGATACCCACTTCCCCAAGTTAGTATGAGGTCCTGGGG
CTCTTGTAGGACTGACCAGGAACATTCACCAGCAAGCTGTGCTGGGCCTCAGTGGCCTGC
ATGCAGCCAGGCCGTGGATGGAGCTGGACTTTCTGGGTTCCGTCACCTGCTGCTGGCTGT
TTCACCCACAGCTCCCTTGGACCAGGGAGTGGAAGCCAGCTGTCTCTTGCCTAATTAAAA
TTCTGCTCCAGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGGCCCGCCTGGCCCTGACGGCGCCCCCCGAGGCCCTGCTCATGGTCCTGCCCTTTAT
CTGCAACTTGCTGCGCAGACACCCAGCCTGCCGCGTCCTTGTGCACCGCCCAAGGGGCCC
TGAGCTGGATGCTGACCCCTATGACCCTGAAGAGGAGGATCCTGCCCAGAGCAGAGCCCT
GGAGAGCTCCCTGTGGGAGCTGCAGGCTCTCCAGCAGCATTACCACCCTGAGGTGTCCAA
GGCTGCCAGCGTCATCAACCAGGCACTGTCTGTGCCTGAGGCCAGCATCGCGCCACTCCT
GGAGCTCACTGCCTTTGAGATCTTCGAGAGGGACCTGAAGAAGAAGGGGCCTGAGTCGGT
GCCTCTGGAGTTCATCCCGGCCCAGGGCCTCTTGGGCCGGCGGGATGACCTCTGTGCCCA
ACACTTCACGCTGAGCTGACCCGGAGCCCTTGCTCCCCTGGATGGATGGTTTGGGAGGAG
AGCTGCTTGGGTGGGCTGGTGGGCGGGGGTCCAGGGAGGCACAGGTCCTTTTCCCCAGCC
CTTCCTGCCAAAGAAGCAGCACCTGCCCTGGGTCTCCTCTGCGACCCTGTGCTGCATGAG
CTGGCGTGGTCTGAGTGCTGTCTGTCTTTGGGGTGGAGTTAGCTTCTTAAAGACAGTGTC
ATGTATGCCTTGTGCACGAGTGTCGTGGAGCCCAGGACGGTGGCCAACACCTATTGCGCC
TCAGCGCGTGTCAGTTTTCTCCATCAAACCTCGTGGAAGTGGCTTTACGGGATCTGGCCT
CAGGTGCCTGGGGCTCCTCCCACGATACCCACTTCCCCAAGTTAGTATGAGGTCCTGGGG
CTCTTGTAGGACTGACCAGGAACATTCACCAGCAAGCTGTGCTGGGCCTCAGTGGCCTGC
ATGCAGCCAGGCCGTGGATGGAGCTGGACTTTCTGGGTTCCGTCACCTGCTGCTGGCTGT
TTCACCCACAGCTCCCTTGGACCAGGGAGTGGAAGCCAGCTGTCTCTTGCCTAATTAAAA
TTCTGCTCCAGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61877135|ref|XP_601409.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61877135|ref|XP_601409.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               162-271, - strand, RNAz p=0.908677

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               162-271, - strand, RNAz p=0.908677

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-122, gnl|bosTau2|chr17 (23598213-23598092)
               

               
               1-122, gnl|canFam2|chr26 (3830767-3830583)
               

               
               1-122, gnl|danRer3|chr25 (27564617-27564447)
               

               
               1-122, gnl|dasNov1|scaffold_116314 (1135-952)
               

               
               1-122, gnl|echTel1|scaffold_299283 (9312-9129)
               

               
               1-122, gnl|hg17|chr12 (131302240-131302424)
               

               
               1-122, gnl|Hg17|chr12 (131302298-131302419)
               

               
               1-122, gnl|mm7|chr5 (109815920-109815737)
               

               
               1-122, gnl|Mm7|chr5 (109815861-109815740)
               

               
               1-122, gnl|monDom2|scaffold_54 (3766133-3765969)
               

               
               1-122, gnl|panTro1|chr10 (134343692-134343876)
               

               
               1-122, gnl|rheMac2|chr11 (133480646-133480830)
               

               
               1-122, gnl|rn3|chr12 (46028270-46028453)
               

               
               1-122, gnl|tetNig1|chrUn_random (97816433-97816265)
               

               
               1-122, gnl|xenTro1|scaffold_322 (1113660-1113829)
               


               
               162-319, gnl|bosTau2|chr17 (23597680-23597526)
               

               
               162-319, gnl|Hg17|chr12 (131302808-131302972)
               

               
               162-319, gnl|Mm7|chr5 (109815415-109815273)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-122, gnl|bosTau2|chr17 (23598213-23598092)
               

               
               1-122, gnl|canFam2|chr26 (3830767-3830583)
               

               
               1-122, gnl|danRer3|chr25 (27564617-27564447)
               

               
               1-122, gnl|dasNov1|scaffold_116314 (1135-952)
               

               
               1-122, gnl|echTel1|scaffold_299283 (9312-9129)
               

               
               1-122, gnl|hg17|chr12 (131302240-131302424)
               

               
               1-122, gnl|Hg17|chr12 (131302298-131302419)
               

               
               1-122, gnl|mm7|chr5 (109815920-109815737)
               

               
               1-122, gnl|Mm7|chr5 (109815861-109815740)
               

               
               1-122, gnl|monDom2|scaffold_54 (3766133-3765969)
               

               
               1-122, gnl|panTro1|chr10 (134343692-134343876)
               

               
               1-122, gnl|rheMac2|chr11 (133480646-133480830)
               

               
               1-122, gnl|rn3|chr12 (46028270-46028453)
               

               
               1-122, gnl|tetNig1|chrUn_random (97816433-97816265)
               

               
               1-122, gnl|xenTro1|scaffold_322 (1113660-1113829)
               


               
               162-319, gnl|bosTau2|chr17 (23597680-23597526)
               

               
               162-319, gnl|Hg17|chr12 (131302808-131302972)
               

               
               162-319, gnl|Mm7|chr5 (109815415-109815273)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               sme (0.305437)
               

               
               hlv (0.278513)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               nmm (0.132802)
               

               
               cly (0.120642)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               hlv (0.278513)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               nmm (0.132802)
               

               
               cly (0.120642)
               

               
               eje (0.0988338)

	1-122, gnl\|bosTau2\|chr17 (23598213-23598092)
	1-122, gnl\|canFam2\|chr26 (3830767-3830583)
	1-122, gnl\|danRer3\|chr25 (27564617-27564447)
	1-122, gnl\|dasNov1\|scaffold_116314 (1135-952)
	1-122, gnl\|echTel1\|scaffold_299283 (9312-9129)
	1-122, gnl\|hg17\|chr12 (131302240-131302424)
	1-122, gnl\|Hg17\|chr12 (131302298-131302419)
	1-122, gnl\|mm7\|chr5 (109815920-109815737)
	1-122, gnl\|Mm7\|chr5 (109815861-109815740)
	1-122, gnl\|monDom2\|scaffold_54 (3766133-3765969)
	1-122, gnl\|panTro1\|chr10 (134343692-134343876)
	1-122, gnl\|rheMac2\|chr11 (133480646-133480830)
	1-122, gnl\|rn3\|chr12 (46028270-46028453)
	1-122, gnl\|tetNig1\|chrUn_random (97816433-97816265)
	1-122, gnl\|xenTro1\|scaffold_322 (1113660-1113829)

	162-319, gnl\|bosTau2\|chr17 (23597680-23597526)
	162-319, gnl\|Hg17\|chr12 (131302808-131302972)
	162-319, gnl\|Mm7\|chr5 (109815415-109815273)

	sme (0.305437)
	hlv (0.278513)
	ece (0.229305)
	mas (0.210305)
	nmm (0.132802)
	cly (0.120642)
	eje (0.0988338)