Ss1.1-Pig4-TMW8068A07.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGGAGGAAGTGCCTGCTGATCGTCATGGAGTGTTTGGATGGTGGAGAACTCTTTAGCCG AATCCAGGACCGAGGAGACCAAGCGTTCACAGAAAGAGAGGCATCAGAAATCATGAAGAG CATTGGTGAGGCCATCCAGTATTTGCACTCAATCAACATTGCTCATCGAGACGTCAAGCC TGAGAATCTCTTGTACACCTCCAAAAGGCCCAACGCCATTCTCAAACTCACCGATTTTGG CTTTGCCAAGGAAACCACCAGCCACAACTCACTGACCACTCCCTGTTACACGCCGTACTA TGTGGCTCCAGAAGTGCTGGGCCCCGAGAAGTATGACAAGTCCTGTGACATGTGGTCCTT GGGTGTCATCATGTACATCCTGCTGTGTGGGTACCCCCCCTTCTATTCCAACCATGGCCT CGCCATCTCTCCCGGCATGAAGAGTCGCATCCGAATGGGCCAGTATGAATTTCCCAACCC GGAATGGTCAGAAGTATCAGAAGAAGTGAAGATGCTCATCCGGAACCTGCTGAAGACAGA GCCCACCCAGAGGATGACCATCACCGAGTTCATGAACCACCCCTGGATCATGCAATCTAC GAAGGTCCCTCAAACCCCACTGCACACCAGCCGGGTCCTGAAGGAGGACAAGGAGCGGTG GGAGGATGTCAAGGAGGAGATGACCAGTGCCTTGGCCACCATGCGGGTCGACTACGAGCA GATCAAAATCAAAAAGATTGAAGACGCGTCCAACCCTCTGCTTCTGAAGAGGCGGAAGAA AGCTCGGGCCCTGGAGGCCGCGGCCCTCGCCCACTGAGCCGCTGAGCCCGTCCTGCCACA CTGGAGGACAAGCAATAACTCTTGACCTGGATATATTTTTTAAATGAAGAGACACAGAAT TGTCCATTTCCGCCTCCCCTCCTCCTTGGCTGCATGGAGCCCGGACCTCATCGGGGCTGG ATTCTGCCTTTGGATCTGGCCGCCTCCTGGAGAAGGAGAGGCTGGGAGGCTGGGAGGGCT TGGTGAGAAGGAGCAAGATGCTCTTGAACCTGTGCTCATTTTGCAATTTTATCAGTAATT TGACTTAGAATTTTTATGAAACTTCTTCTATTGTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGGAGGAAGTGCCTGCTGATCGTCATGGAGTGTTTGGATGGTGGAGAACTCTTTAGCCG AATCCAGGACCGAGGAGACCAAGCGTTCACAGAAAGAGAGGCATCAGAAATCATGAAGAG CATTGGTGAGGCCATCCAGTATTTGCACTCAATCAACATTGCTCATCGAGACGTCAAGCC TGAGAATCTCTTGTACACCTCCAAAAGGCCCAACGCCATTCTCAAACTCACCGATTTTGG CTTTGCCAAGGAAACCACCAGCCACAACTCACTGACCACTCCCTGTTACACGCCGTACTA TGTGGCTCCAGAAGTGCTGGGCCCCGAGAAGTATGACAAGTCCTGTGACATGTGGTCCTT GGGTGTCATCATGTACATCCTGCTGTGTGGGTACCCCCCCTTCTATTCCAACCATGGCCT CGCCATCTCTCCCGGCATGAAGAGTCGCATCCGAATGGGCCAGTATGAATTTCCCAACCC GGAATGGTCAGAAGTATCAGAAGAAGTGAAGATGCTCATCCGGAACCTGCTGAAGACAGA GCCCACCCAGAGGATGACCATCACCGAGTTCATGAACCACCCCTGGATCATGCAATCTAC GAAGGTCCCTCAAACCCCACTGCACACCAGCCGGGTCCTGAAGGAGGACAAGGAGCGGTG GGAGGATGTCAAGGAGGAGATGACCAGTGCCTTGGCCACCATGCGGGTCGACTACGAGCA GATCAAAATCAAAAAGATTGAAGACGCGTCCAACCCTCTGCTTCTGAAGAGGCGGAAGAA AGCTCGGGCCCTGGAGGCCGCGGCCCTCGCCCACTGAGCCGCTGAGCCCGTCCTGCCACA CTGGAGGACAAGCAATAACTCTTGACCTGGATATATTTTTTAAATGAAGAGACACAGAAT TGTCCATTTCCGCCTCCCCTCCTCCTTGGCTGCATGGAGCCCGGACCTCATCGGGGCTGG ATTCTGCCTTTGGATCTGGCCGCCTCCTGGAGAAGGAGAGGCTGGGAGGCTGGGAGGGCT TGGTGAGAAGGAGCAAGATGCTCTTGAACCTGTGCTCATTTTGCAATTTTATCAGTAATT TGACTTAGAATTTTTATGAAACTTCTTCTATTGTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 395-512, - strand, RNAz p=0.835475 | |
| 911-1028, + strand, RNAz p=0.818993 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 395-512, - strand, RNAz p=0.835475 | |
| 911-1028, + strand, RNAz p=0.818993 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_032960, + |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 174-305, gnl|bosTau2|chr16 (3251474-3251605) | |
| 174-305, gnl|canFam2|chr7 (8854534-8854680) | |
| 174-305, gnl|danRer3|chr11 (23074066-23073915) | |
| 174-305, gnl|dasNov1|scaffold_23227 (45188-45042) | |
| 174-305, gnl|fr1|chrUn (3778092-3778232) | |
| 174-305, gnl|galGal2|chr26 (1131059-1131205) | |
| 174-305, gnl|hg17|chr1 (203291698-203291844) | |
| 174-305, gnl|Hg17|chr1 (203291707-203291838) | |
| 174-305, gnl|loxAfr1|scaffold_14574 (94221-94074) | |
| 174-305, gnl|mm7|chr1 (130961755-130961609) | |
| 174-305, gnl|Mm7|chr1 (130961744-130961613) | |
| 174-305, gnl|oryCun1|scaffold_202694 (203293-203439) | |
| 174-305, gnl|panTro1|chr1 (186872761-186872907) | |
| 174-305, gnl|rheMac2|chr1 (163633884-163633738) | |
| 174-305, gnl|rn3|chr13 (44012934-44012788) | |
| 174-305, gnl|tetNig1|chr11 (8917640-8917763) | |
| 174-305, gnl|xenTro1|scaffold_736 (281444-281298) | |
| 382-512, gnl|bosTau2|chr16 (3252647-3252778) | |
| 382-512, gnl|canFam2|chr7 (8855778-8855910) | |
| 382-512, gnl|danRer3|chr11 (23073603-23073473) | |
| 382-512, gnl|dasNov1|scaffold_23227 (44011-43879) | |
| 382-512, gnl|echTel1|scaffold_304295 (2943-3071) | |
| 382-512, gnl|fr1|chrUn (3778456-3778588) | |
| 382-512, gnl|galGal2|chr26 (1131788-1131920) | |
| 382-512, gnl|hg17|chr1 (203292876-203293008) | |
| 382-512, gnl|Hg17|chr1 (203292878-203293008) | |
| 382-512, gnl|loxAfr1|scaffold_14574 (93089-92957) | |
| 382-512, gnl|mm7|chr1 (130960661-130960529) | |
| 382-512, gnl|Mm7|chr1 (130960657-130960527) | |
| 382-512, gnl|monDom2|scaffold_13 (8839905-8840037) | |
| 382-512, gnl|oryCun1|scaffold_210184 (33196-33328) | |
| 382-512, gnl|panTro1|chr1 (186873934-186874066) | |
| 382-512, gnl|rheMac2|chr1 (163632707-163632575) | |
| 382-512, gnl|rn3|chr13 (44011979-44011815) | |
| 382-512, gnl|tetNig1|chr11 (8918014-8918146) | |
| 382-512, gnl|xenTro1|scaffold_736 (279351-279219) | |
| 672-1116, gnl|bosTau2|chr16 (3254100-3254538) | |
| 672-1116, gnl|Hg17|chr1 (203294313-203294753) | |
| 672-1116, gnl|Mm7|chr1 (130959356-130958937) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 174-305, gnl|bosTau2|chr16 (3251474-3251605) | |
| 174-305, gnl|canFam2|chr7 (8854534-8854680) | |
| 174-305, gnl|danRer3|chr11 (23074066-23073915) | |
| 174-305, gnl|dasNov1|scaffold_23227 (45188-45042) | |
| 174-305, gnl|fr1|chrUn (3778092-3778232) | |
| 174-305, gnl|galGal2|chr26 (1131059-1131205) | |
| 174-305, gnl|hg17|chr1 (203291698-203291844) | |
| 174-305, gnl|Hg17|chr1 (203291707-203291838) | |
| 174-305, gnl|loxAfr1|scaffold_14574 (94221-94074) | |
| 174-305, gnl|mm7|chr1 (130961755-130961609) | |
| 174-305, gnl|Mm7|chr1 (130961744-130961613) | |
| 174-305, gnl|oryCun1|scaffold_202694 (203293-203439) | |
| 174-305, gnl|panTro1|chr1 (186872761-186872907) | |
| 174-305, gnl|rheMac2|chr1 (163633884-163633738) | |
| 174-305, gnl|rn3|chr13 (44012934-44012788) | |
| 174-305, gnl|tetNig1|chr11 (8917640-8917763) | |
| 174-305, gnl|xenTro1|scaffold_736 (281444-281298) | |
| 382-512, gnl|bosTau2|chr16 (3252647-3252778) | |
| 382-512, gnl|canFam2|chr7 (8855778-8855910) | |
| 382-512, gnl|danRer3|chr11 (23073603-23073473) | |
| 382-512, gnl|dasNov1|scaffold_23227 (44011-43879) | |
| 382-512, gnl|echTel1|scaffold_304295 (2943-3071) | |
| 382-512, gnl|fr1|chrUn (3778456-3778588) | |
| 382-512, gnl|galGal2|chr26 (1131788-1131920) | |
| 382-512, gnl|hg17|chr1 (203292876-203293008) | |
| 382-512, gnl|Hg17|chr1 (203292878-203293008) | |
| 382-512, gnl|loxAfr1|scaffold_14574 (93089-92957) | |
| 382-512, gnl|mm7|chr1 (130960661-130960529) | |
| 382-512, gnl|Mm7|chr1 (130960657-130960527) | |
| 382-512, gnl|monDom2|scaffold_13 (8839905-8840037) | |
| 382-512, gnl|oryCun1|scaffold_210184 (33196-33328) | |
| 382-512, gnl|panTro1|chr1 (186873934-186874066) | |
| 382-512, gnl|rheMac2|chr1 (163632707-163632575) | |
| 382-512, gnl|rn3|chr13 (44011979-44011815) | |
| 382-512, gnl|tetNig1|chr11 (8918014-8918146) | |
| 382-512, gnl|xenTro1|scaffold_736 (279351-279219) | |
| 672-1116, gnl|bosTau2|chr16 (3254100-3254538) | |
| 672-1116, gnl|Hg17|chr1 (203294313-203294753) | |
| 672-1116, gnl|Mm7|chr1 (130959356-130958937) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| csp (0.322373) | |
| nco (0.161734) | |
| cst (0.140036) | |
| ste (0.135208) | |
| pla (0.133672) | |
| jca (0.11396) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (0.322373) | |
| nco (0.161734) | |
| cst (0.140036) | |
| ste (0.135208) | |
| pla (0.133672) | |
| jca (0.11396) |