Non-Coding RNA Search

Ss1.1-Pig4-TMW8068A12.3

Sequence:


               
               GAAAACACCACCAACAAAAGGCAAGAGCAAGAGTAACAGAATGTGAACTCCAGGATAGGT
AGGTTTTTATTGTTACATTGAAAATGTAAATGTGTGGTTTCAAGAACTAGTGGTAGAATT
TTTCCTTTACCTTAACCATTTACATAAATGCAAACAATAGTTATTGAACTTTACCACAGC
AATTTGGGTCATTCTTAATTTTAACTGACTGGGTAATTTCTTCCTTTTGCCATGACCTGT
TGATCAGTGGCATTGACAGAGGCCCAGACTGGCAGGAAAGAGGATGTCATTTGGTGAAGT
TCTATTTCTTCGTGAACTGATCTGTCATTCAGTCACAGGATGGAGCTGTGGGTTCATTCA
GAGGTGGCAAACCTCCTCTCCACCATCCCTTGGAATATGAGAGAATAATCTTGGCCAGTC
TGGGAAAATCATTAGGGCATCCTGCAGTGTGTAAATATGCAGTGCCAGAGAGTTGAACCC
CAAACTTGTTATCCTCTGATAAAAGCTGGACTGGGGGCTTACCTAACCATCAGCTCTGAA
CTGCGGCTGCTTTTGTTCACTTACGGAATCATGTGCCAGGTTAGAAGCTATGGTTAGCTG
GTAATTTTGTTGTGTAATTGAGTAGAATGAAGGAGGAAAAACATCTAGGGTACTGCTAAC
CACTATTTTTGTGCAAATAGTCTAAAAGTGAAGTAAAAACAATAGTAGAAGTTTCTACAA
TATCTGGGTTTAGAGTGTATATGATTAACATACCTTTGTTCTTTTCAGGGAGAGCAAAAC
AACCACCTCTACTTAATAAATAGTTGGGAGTAGAAAATTGGGTTGTTTTGCTGTGTCATT
TACCTGGGAAGGATGCTTTGGTATATTTAGCTGTTCTCCATTTATAGTTAGTGTCTCTGT
ATGACACTTAAGTCATCCCCACAGATAGGACTTAGTGTCATACAGAAATACCTCTATGAC
ATACCTGTTTCAGAAATACAGGTATTTCTTGAGAGAAGGGCCTGGTTTATTTCCCCCTAT
TTCTTTTGTGGAATGTCTAAAGAAAATGCTAACTTGCACATGTTGGTTTTTGAAATCCTC
CTTAACCAGAAGAGTTTAGGGTCATACAACACATGGCTAGGCTGTAGCTGTTCTCAGCTC
TTCTGGGGGAGCTGAAACTTGTGGGAAAACACTGGTTTTCACAAATGCTCCACATGGCTG
TCTTTAAAAAAAGACTCAAAACTTTTTTCTTTTTTTTTTGGCCTTTCCTTCTCTTTGTTA
TGCTTGGAAACCCCCACAGTGTGTCGAGTCTTTGCAAAGAAACCTTTCGATGTGGTTCAT
AGGTATATGAATAACTATCTGTGTGAAACAGTGAGTGTGCAGTGTGTAAATACTTTAAAT
TATTATGCTAGAAAAATAAAGCTACATACCATGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAACACCACCAACAAAAGGCAAGAGCAAGAGTAACAGAATGTGAACTCCAGGATAGGT
AGGTTTTTATTGTTACATTGAAAATGTAAATGTGTGGTTTCAAGAACTAGTGGTAGAATT
TTTCCTTTACCTTAACCATTTACATAAATGCAAACAATAGTTATTGAACTTTACCACAGC
AATTTGGGTCATTCTTAATTTTAACTGACTGGGTAATTTCTTCCTTTTGCCATGACCTGT
TGATCAGTGGCATTGACAGAGGCCCAGACTGGCAGGAAAGAGGATGTCATTTGGTGAAGT
TCTATTTCTTCGTGAACTGATCTGTCATTCAGTCACAGGATGGAGCTGTGGGTTCATTCA
GAGGTGGCAAACCTCCTCTCCACCATCCCTTGGAATATGAGAGAATAATCTTGGCCAGTC
TGGGAAAATCATTAGGGCATCCTGCAGTGTGTAAATATGCAGTGCCAGAGAGTTGAACCC
CAAACTTGTTATCCTCTGATAAAAGCTGGACTGGGGGCTTACCTAACCATCAGCTCTGAA
CTGCGGCTGCTTTTGTTCACTTACGGAATCATGTGCCAGGTTAGAAGCTATGGTTAGCTG
GTAATTTTGTTGTGTAATTGAGTAGAATGAAGGAGGAAAAACATCTAGGGTACTGCTAAC
CACTATTTTTGTGCAAATAGTCTAAAAGTGAAGTAAAAACAATAGTAGAAGTTTCTACAA
TATCTGGGTTTAGAGTGTATATGATTAACATACCTTTGTTCTTTTCAGGGAGAGCAAAAC
AACCACCTCTACTTAATAAATAGTTGGGAGTAGAAAATTGGGTTGTTTTGCTGTGTCATT
TACCTGGGAAGGATGCTTTGGTATATTTAGCTGTTCTCCATTTATAGTTAGTGTCTCTGT
ATGACACTTAAGTCATCCCCACAGATAGGACTTAGTGTCATACAGAAATACCTCTATGAC
ATACCTGTTTCAGAAATACAGGTATTTCTTGAGAGAAGGGCCTGGTTTATTTCCCCCTAT
TTCTTTTGTGGAATGTCTAAAGAAAATGCTAACTTGCACATGTTGGTTTTTGAAATCCTC
CTTAACCAGAAGAGTTTAGGGTCATACAACACATGGCTAGGCTGTAGCTGTTCTCAGCTC
TTCTGGGGGAGCTGAAACTTGTGGGAAAACACTGGTTTTCACAAATGCTCCACATGGCTG
TCTTTAAAAAAAGACTCAAAACTTTTTTCTTTTTTTTTTGGCCTTTCCTTCTCTTTGTTA
TGCTTGGAAACCCCCACAGTGTGTCGAGTCTTTGCAAAGAAACCTTTCGATGTGGTTCAT
AGGTATATGAATAACTATCTGTGTGAAACAGTGAGTGTGCAGTGTGTAAATACTTTAAAT
TATTATGCTAGAAAAATAAAGCTACATACCATGCTG

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-956, gnl|bosTau2|chr7 (60521606-60522546)
               

               
               1-956, gnl|Hg17|chr5 (98158739-98159692)
               

               
               1-956, gnl|Mm7|chr17 (14042704-14041832)
               


               
               961-1416, gnl|bosTau2|chr7 (60522515-60522955)
               

               
               961-1416, gnl|Hg17|chr5 (98159663-98160093)
               

               
               961-1416, gnl|Mm7|chr17 (14041860-14041445)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-956, gnl|bosTau2|chr7 (60521606-60522546)
               

               
               1-956, gnl|Hg17|chr5 (98158739-98159692)
               

               
               1-956, gnl|Mm7|chr17 (14042704-14041832)
               


               
               961-1416, gnl|bosTau2|chr7 (60522515-60522955)
               

               
               961-1416, gnl|Hg17|chr5 (98159663-98160093)
               

               
               961-1416, gnl|Mm7|chr17 (14041860-14041445)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

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               fhi (0.678311)
               

               
               bla (0.373042)
               

               
               isp (0.300752)
               

               
               ldo (0.291008)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               ton (0.1755)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.678311)
               

               
               bla (0.373042)
               

               
               isp (0.300752)
               

               
               ldo (0.291008)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               ton (0.1755)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

	1-956, gnl\|bosTau2\|chr7 (60521606-60522546)
	1-956, gnl\|Hg17\|chr5 (98158739-98159692)
	1-956, gnl\|Mm7\|chr17 (14042704-14041832)

	961-1416, gnl\|bosTau2\|chr7 (60522515-60522955)
	961-1416, gnl\|Hg17\|chr5 (98159663-98160093)
	961-1416, gnl\|Mm7\|chr17 (14041860-14041445)

	fhi (0.678311)
	bla (0.373042)
	isp (0.300752)
	ldo (0.291008)
	cbe (0.239234)
	ece (0.229305)
	ton (0.1755)
	nje (0.16592)
	mga (0.160205)
	hyp (0.142837)
	ssp (0.13552)
	ese (0.126502)
	eru (0.120048)
	cty (0.10408)