Non-Coding RNA Search

Ss1.1-Pig4-TMW8068A15.3

Sequence:


               
               GCGAGTTCTGTGGCTGTGACTTCAGCGGGGAGGCCTTTGAGAGCCACGAGGGTGTGTGCC
CCCAAGAGAGTGTGTACTGTGAGAACAAGTGCGGGGCCCGCATGATGCGGCGGCTGCTGG
CCCAGCATGCCACCTCTGAGTGCCCCAAGCGCACCCAGCCTTGCACCTACTGCACCAAGG
AGTTCGTCTTTGACACCATCCAGAGCCACCAGTACCAGTGCCCCAGGCTGCCTGTGCCCT
GCCCCAACCAGTGTGGCGTGGGCACTGTGGCCCGGGAGGACCTGCCCGGCCATCTGAAGG
ACAGCTGCAGCACTGCCCTGGTGCTGTGCCCATTCAAAGACTCTGGCTGCAAGCACAGGT
GCCCTAAGCTGGCAATGGCACGGCACGTGGAGGAGAGCGTGAAGCCACATCTGGCCATGA
TGTGCGCCCTGGTGAGCCGGCAGCGGCAGGAGCTGCAGGAGCTGCGGAGAGAGCTGGAGG
AGCTGTCGGTGGGCAGTGACGGCGTGCTCATCTGGAAGATTGGCAGTTACGGGCGCCGGC
TACAGGAGGCCAAAGCCAAGCCCAACCTCGAGTGCTTCAGCCCCGCCTTCTACACGCATA
AGTATGGCTACAAGCTGCAGGTCTCTGCTTTCCTCAACGGCAACGGCAGCGGGGAGGGCA
CACACCTCTCGCTCTACATTCGCGTGCTGCCAGGTGCCTTTGACAATCTCCTTGAGTGGC
CCTTTGCCCGCCGCGTCACCTTCTCCCTGCTGGATCAGAGCGAACCTGGGCTGGCTAAGC
CACAGCATGTCACTGAGACCTTTCACCCTGACCCAAACTGGAAGAATTTCCAAAAACCAG
GCACTTGGCGGGGCTCCCTGGATGAGAGTTCGCTGGGCTTTGGCTACCCCAAGTTCATCT
CCCACCAGGATATCCGCAAGCGAAACTATGTGCGGGATGATGCAGTCTTCATCCGTGCCT
CTGTTGAATTGCCCCGAAAGATCCTCAGCTGAGTGCAGACCCAGCTGCAGGAGAAAGGGG
GTGGGAAGTGACCATCAGGCACTGGCTGAGGCTGGAGAGGGGGCCGGACCCCCTTACAGC
TGTCTCTGCTGCCTAGGTTCTGTTCCCCCTCCCTCCTTCCCCACCACCCTCAGGTGCCTC
CTATTGGTGCTTCAGCCCTGGCCTCTGGGGAGAGCAGGTCTTTGGGTCATCAAGGGCTTG
GAAACAAGTGATCCCAGGGCCTGTCTCCTGGGCAGGGCAGACATGCCTTGGTGCCGGCCA
CACTCTACCCAGGACTGAGGTGCCTGCTGGTGCTATGTCCCAAGAGCCATAGGGGGGAGG
GGGATTTGGGAAACTGAGGGGTAGTTAAAGAATCTGTCTTGAGATCTGATTTCCCCTTCC
CCCAGCTGTGTCCCCTCTGGTTATTTATTTACTTAGTGCCAGGAGGGCACAGCAGGGGAG
CCCTGATTTTTAATAAATCCTGAATTGTATTTATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGAGTTCTGTGGCTGTGACTTCAGCGGGGAGGCCTTTGAGAGCCACGAGGGTGTGTGCC
CCCAAGAGAGTGTGTACTGTGAGAACAAGTGCGGGGCCCGCATGATGCGGCGGCTGCTGG
CCCAGCATGCCACCTCTGAGTGCCCCAAGCGCACCCAGCCTTGCACCTACTGCACCAAGG
AGTTCGTCTTTGACACCATCCAGAGCCACCAGTACCAGTGCCCCAGGCTGCCTGTGCCCT
GCCCCAACCAGTGTGGCGTGGGCACTGTGGCCCGGGAGGACCTGCCCGGCCATCTGAAGG
ACAGCTGCAGCACTGCCCTGGTGCTGTGCCCATTCAAAGACTCTGGCTGCAAGCACAGGT
GCCCTAAGCTGGCAATGGCACGGCACGTGGAGGAGAGCGTGAAGCCACATCTGGCCATGA
TGTGCGCCCTGGTGAGCCGGCAGCGGCAGGAGCTGCAGGAGCTGCGGAGAGAGCTGGAGG
AGCTGTCGGTGGGCAGTGACGGCGTGCTCATCTGGAAGATTGGCAGTTACGGGCGCCGGC
TACAGGAGGCCAAAGCCAAGCCCAACCTCGAGTGCTTCAGCCCCGCCTTCTACACGCATA
AGTATGGCTACAAGCTGCAGGTCTCTGCTTTCCTCAACGGCAACGGCAGCGGGGAGGGCA
CACACCTCTCGCTCTACATTCGCGTGCTGCCAGGTGCCTTTGACAATCTCCTTGAGTGGC
CCTTTGCCCGCCGCGTCACCTTCTCCCTGCTGGATCAGAGCGAACCTGGGCTGGCTAAGC
CACAGCATGTCACTGAGACCTTTCACCCTGACCCAAACTGGAAGAATTTCCAAAAACCAG
GCACTTGGCGGGGCTCCCTGGATGAGAGTTCGCTGGGCTTTGGCTACCCCAAGTTCATCT
CCCACCAGGATATCCGCAAGCGAAACTATGTGCGGGATGATGCAGTCTTCATCCGTGCCT
CTGTTGAATTGCCCCGAAAGATCCTCAGCTGAGTGCAGACCCAGCTGCAGGAGAAAGGGG
GTGGGAAGTGACCATCAGGCACTGGCTGAGGCTGGAGAGGGGGCCGGACCCCCTTACAGC
TGTCTCTGCTGCCTAGGTTCTGTTCCCCCTCCCTCCTTCCCCACCACCCTCAGGTGCCTC
CTATTGGTGCTTCAGCCCTGGCCTCTGGGGAGAGCAGGTCTTTGGGTCATCAAGGGCTTG
GAAACAAGTGATCCCAGGGCCTGTCTCCTGGGCAGGGCAGACATGCCTTGGTGCCGGCCA
CACTCTACCCAGGACTGAGGTGCCTGCTGGTGCTATGTCCCAAGAGCCATAGGGGGGAGG
GGGATTTGGGAAACTGAGGGGTAGTTAAAGAATCTGTCTTGAGATCTGATTTCCCCTTCC
CCCAGCTGTGTCCCCTCTGGTTATTTATTTACTTAGTGCCAGGAGGGCACAGCAGGGGAG
CCCTGATTTTTAATAAATCCTGAATTGTATTTATAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|15451442|dbj|BAB64525.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|15451442|dbj|BAB64525.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               86-517, + strand, RNAz p=0.792027
               

               
               709-867, - strand, RNAz p=0.932875
               

               
               1024-1474, + strand, RNAz p=0.999479

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               86-517, + strand, RNAz p=0.792027
               

               
               709-867, - strand, RNAz p=0.932875
               

               
               1024-1474, + strand, RNAz p=0.999479

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_145751, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_145751, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               40-203, gnl|bosTau2|chr19 (13708008-13708171)
               

               
               40-203, gnl|Hg17|chr17 (24099405-24099568)
               

               
               40-203, gnl|Mm7|chr11 (78242771-78242608)
               


               
               359-683, gnl|bosTau2|chr19 (13708673-13708997)
               

               
               359-683, gnl|Hg17|chr17 (24100089-24100412)
               

               
               359-683, gnl|Mm7|chr11 (78242124-78241801)
               


               
               709-1474, gnl|bosTau2|chr19 (13709048-13709826)
               

               
               709-1474, gnl|Hg17|chr17 (24100439-24101222)
               

               
               709-1474, gnl|Mm7|chr11 (78241774-78240983)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-203, gnl|bosTau2|chr19 (13708008-13708171)
               

               
               40-203, gnl|Hg17|chr17 (24099405-24099568)
               

               
               40-203, gnl|Mm7|chr11 (78242771-78242608)
               


               
               359-683, gnl|bosTau2|chr19 (13708673-13708997)
               

               
               359-683, gnl|Hg17|chr17 (24100089-24100412)
               

               
               359-683, gnl|Mm7|chr11 (78242124-78241801)
               


               
               709-1474, gnl|bosTau2|chr19 (13709048-13709826)
               

               
               709-1474, gnl|Hg17|chr17 (24100439-24101222)
               

               
               709-1474, gnl|Mm7|chr11 (78241774-78240983)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               ece (0.229305)
               

               
               mcp (0.170648)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               mcp (0.170648)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	86-517, + strand, RNAz p=0.792027
	709-867, - strand, RNAz p=0.932875
	1024-1474, + strand, RNAz p=0.999479

	40-203, gnl\|bosTau2\|chr19 (13708008-13708171)
	40-203, gnl\|Hg17\|chr17 (24099405-24099568)
	40-203, gnl\|Mm7\|chr11 (78242771-78242608)

	359-683, gnl\|bosTau2\|chr19 (13708673-13708997)
	359-683, gnl\|Hg17\|chr17 (24100089-24100412)
	359-683, gnl\|Mm7\|chr11 (78242124-78241801)

	709-1474, gnl\|bosTau2\|chr19 (13709048-13709826)
	709-1474, gnl\|Hg17\|chr17 (24100439-24101222)
	709-1474, gnl\|Mm7\|chr11 (78241774-78240983)

	ece (0.229305)
	mcp (0.170648)
	ese (0.126502)
	cly (0.120642)
	ecc (0.115035)
	eje (0.0988338)