Non-Coding RNA Search

Ss1.1-Pig4-TMW8068A23.3

Sequence:


               
               GGACACCCCCACTCCCTTTACCTCCCTGAAATGAATGAGGCCCAGTTGCTAGAGCTGTTT
TCAGTACTACTGTGATTTTATTAAATATGACATGGTGTTCTGTTCTCAAGTCAGCTTTCC
TTCCGCTCCCTGCAGGCCCACAAACTCTGATCCCTGTCAGGTTCTGTGACAAATCGACAT
GTAGGATGGGCTGGCTACCGTGTTCCTAAGTGTGACGAAGAGGCCAGTTTGCTTGAGAAA
TGAGTAGTTTCAACAAGACTTTTAGAGGGAATATTTAACAAAACAGTGCTTATTTACAAG
AAACTAATATGCTAATTGCAGGGACCCTCAGAGCAGGCTTGGGATACCCTCTTGGCAAGA
ATTCTTGAAAAACATGTACGTTGGAAACCTCTGTATTGTCAAGGGTATGGGCTCAAGACT
GAATCCCAATTCTGGGAGCTGGGGTGCAAGGTGGGTGGGAAAGAAGTGAGCCCTACCGGT
CACCTCAAGGACTCCCAGCTCCAATAATGGATACTAAACCCCCCAGTGGATGGGGCAGGC
CTGGTCCCCTCGCTTGTGACTCAGCTGGGGAAACCAAGGCAGGCAGGGACAGATGAAAAG
GGCTGGATGGTGACCTGGAGTCATTTACAGATGAAGTAACACCGAGGCTTTGTTTCACAC
ATAGAAACATAAAATACTAAAAATATGTTAAGGTCAGGGGACAAGGGCAGTAATTGTCAC
CCACTGCTGCTGGCAGTGCAACTTGATTCAGTTCTTTTGAAGGCTAACCTGTGTCAAGAG
CCATAAAAATGCCCGTATACTTTGACCCAGTAATCCTACTCTGAGGAAATAATTCAAAAG
AAAAATAAAGCATTTACAAAGATGTTTAATAGCAGCATTATTTTCTATTAAAGAAACAAT
AAAGTTTAAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACACCCCCACTCCCTTTACCTCCCTGAAATGAATGAGGCCCAGTTGCTAGAGCTGTTT
TCAGTACTACTGTGATTTTATTAAATATGACATGGTGTTCTGTTCTCAAGTCAGCTTTCC
TTCCGCTCCCTGCAGGCCCACAAACTCTGATCCCTGTCAGGTTCTGTGACAAATCGACAT
GTAGGATGGGCTGGCTACCGTGTTCCTAAGTGTGACGAAGAGGCCAGTTTGCTTGAGAAA
TGAGTAGTTTCAACAAGACTTTTAGAGGGAATATTTAACAAAACAGTGCTTATTTACAAG
AAACTAATATGCTAATTGCAGGGACCCTCAGAGCAGGCTTGGGATACCCTCTTGGCAAGA
ATTCTTGAAAAACATGTACGTTGGAAACCTCTGTATTGTCAAGGGTATGGGCTCAAGACT
GAATCCCAATTCTGGGAGCTGGGGTGCAAGGTGGGTGGGAAAGAAGTGAGCCCTACCGGT
CACCTCAAGGACTCCCAGCTCCAATAATGGATACTAAACCCCCCAGTGGATGGGGCAGGC
CTGGTCCCCTCGCTTGTGACTCAGCTGGGGAAACCAAGGCAGGCAGGGACAGATGAAAAG
GGCTGGATGGTGACCTGGAGTCATTTACAGATGAAGTAACACCGAGGCTTTGTTTCACAC
ATAGAAACATAAAATACTAAAAATATGTTAAGGTCAGGGGACAAGGGCAGTAATTGTCAC
CCACTGCTGCTGGCAGTGCAACTTGATTCAGTTCTTTTGAAGGCTAACCTGTGTCAAGAG
CCATAAAAATGCCCGTATACTTTGACCCAGTAATCCTACTCTGAGGAAATAATTCAAAAG
AAAAATAAAGCATTTACAAAGATGTTTAATAGCAGCATTATTTTCTATTAAAGAAACAAT
AAAGTTTAAATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               749-865, - strand, RNAz p=0.831257

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               749-865, - strand, RNAz p=0.831257

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC080186, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC080186, -

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-912, gnl|bosTau2|chr3 (75295999-75295079)
               

               
               1-912, gnl|Hg17|chr1 (37935788-37937766)
               

               
               1-912, gnl|Mm7|chr4 (124300590-124299839)
               


               
               512-794, gnl|bosTau2|chr25 (23763153-23763437)
               

               
               512-794, gnl|Hg17|chr1 (37937375-37937651)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-912, gnl|bosTau2|chr3 (75295999-75295079)
               

               
               1-912, gnl|Hg17|chr1 (37935788-37937766)
               

               
               1-912, gnl|Mm7|chr4 (124300590-124299839)
               


               
               512-794, gnl|bosTau2|chr25 (23763153-23763437)
               

               
               512-794, gnl|Hg17|chr1 (37937375-37937651)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               fco (0.157208)
               

               
               sug (0.127291)
               

               
               spc (0.113366)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               fco (0.157208)
               

               
               sug (0.127291)
               

               
               spc (0.113366)

	1-912, gnl\|bosTau2\|chr3 (75295999-75295079)
	1-912, gnl\|Hg17\|chr1 (37935788-37937766)
	1-912, gnl\|Mm7\|chr4 (124300590-124299839)

	512-794, gnl\|bosTau2\|chr25 (23763153-23763437)
	512-794, gnl\|Hg17\|chr1 (37937375-37937651)

	hea (0.204499)
	fcc (0.197785)
	fbs (0.175346)
	fco (0.157208)
	sug (0.127291)
	spc (0.113366)