Ss1.1-Pig4-TMW8068B01.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATCAACGAGTGCGTGACGGATATGCACACATGTAGCCGGAGCGAGCACTGCGTGAACAC GGTGGGTTCCTTCCGCTGCTACAAGGCTCTTACCTGTGAGCCTGGCTATATGCTCAAGGA TGGCGAATGTACAGATGTGGATGAGTGTGAGCTGGGCACGCACAGCTGCCAGGTGGGCTT CACGTGCCAGAACACCAAGGGCTCCTTCTACTGCCAGCCAAGGCAGCGCTGCATGGACGG CTTCCTGCAGGACCCTGAGGGCAACTGCGTGGACATCAATGAGTGCACATCACTCTCTGA GCCCTGCCAGCCTGGCTTCAGCTGCGTCAACACGGTGGGCTCCTACACGTGCCAGAGAAA CCCGCTCATCTGTGGGCGTGGCTACCATGCCAGCCAGGACGGGACCAAGTGTGTGGATGT GAATGAGTGTGAGACAGGCGTGCACCACTGCAGCGAGACCCAGGTGTGCCACAACCTCCC TGGCTCCTACCGATGCGACTGCAAGGCTGGCTTCCAGCGGGACGCCTTCGGCCGGACCTG CATTGACGTGAATGAGTGCTGGGCCTCGCCCAGCCGCCTGTGCCAGCACACCTGCGAGAA CACACTTGGCTCCTACCGCTGTTCCTGTGCCTCTGGCTTTGTGCTGGCTGCCGATGGAAA GCACTGTGAAGATGTGAACGAGTGTGAGGCACAGCGCTGCAGCCAAGAGTGCGCCAACAT CTACGGCTCCTACCAGTGCTACTGCCGCCAGGGCTACCAGCTGGCCGAAGACGGGCACAC CTGCATAGACATTGATGAGTGTGCTCAGGGTGCCGGCGTCCTCTGCACCTTCCGCTGCAT CAACGTGCCAGGGAGCTACCAATGTGCATGCCCGGAGCGTGGCTACACCATGACAGCCAA CGGGAGGTCCTGCAAGGACCTGGACGAGTGTGCACTGGGCACCCACAACTGCTCCGAGGC CGAGACCTGCCATAACATCCAGGGCAGCTTCCGCTGCCTGCGCTTTGATTGCCCTCCCAA CTATGTCCGCGTCTCTGAAACGAAGTGTGAGCGCACCCTGTGCCAGGACTTCGTGGAGTG CCAGAACGCTCCTGCGCGGATTACGCACTACCGTCTCAACTTCCAGACTGGGCTGCTGGT GCCCGCACACATCTTCCGCATCAGCCCGGTGCCCGCCTTCGCTGGTGATACCATTGCGCT GACCATCACCAAGGGCAATGAGGAGGGGTACTTTGGCACGCGCCGCCTCAACGCTTACAC GGGCGTCGTCTTCCTGCAGCGGTCGGTGCGCGAGCCGCGGGACTTTGCCCTGGACGTGGA GATGAAGCTCTGGCGGCAGGGCTCCGTCACCACCTTCCTGGCCAAGATGCACATCTTCTT CACCACCTTTGCCCTGTGAAGCAAGGCTGGCCACGTGCGCAGAGCCCGGATTCCCCCTCC CCCGACAGTCTGCGTTGGGTGGGGGCGGGTGCTGCAGTGGGTTTGCTCCCACCCTGTAAA GTAACTTAATTTTGCTGACTCACTCCTCACTTTTGGTCTCTCCCCGGCCAGAGGGAGCCT TGGAGGGTAGTTCCAGGGGCCCTGTGGGTGGGGTGGGAGGATCAGAGTCTATATGTGACC AAGACTGGAAATGGCGACCACGTGGGAGCTTTTGGACTCAACTGGGTGACCTGTCCCCAA AGATGATGCTCTGATGTTCCACTGTGATTAGCTCTTCACTTTTTTTTTAAGAAAATCATT TTTAAGTGTTTTTGTTTAATTATAAAAGTAGTACATGTACATTGCAAATATATATATATT CAAATAGTACAAAAGGGTTTTAAAGTAAAAAAGTGAAAAAGAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATCAACGAGTGCGTGACGGATATGCACACATGTAGCCGGAGCGAGCACTGCGTGAACAC GGTGGGTTCCTTCCGCTGCTACAAGGCTCTTACCTGTGAGCCTGGCTATATGCTCAAGGA TGGCGAATGTACAGATGTGGATGAGTGTGAGCTGGGCACGCACAGCTGCCAGGTGGGCTT CACGTGCCAGAACACCAAGGGCTCCTTCTACTGCCAGCCAAGGCAGCGCTGCATGGACGG CTTCCTGCAGGACCCTGAGGGCAACTGCGTGGACATCAATGAGTGCACATCACTCTCTGA GCCCTGCCAGCCTGGCTTCAGCTGCGTCAACACGGTGGGCTCCTACACGTGCCAGAGAAA CCCGCTCATCTGTGGGCGTGGCTACCATGCCAGCCAGGACGGGACCAAGTGTGTGGATGT GAATGAGTGTGAGACAGGCGTGCACCACTGCAGCGAGACCCAGGTGTGCCACAACCTCCC TGGCTCCTACCGATGCGACTGCAAGGCTGGCTTCCAGCGGGACGCCTTCGGCCGGACCTG CATTGACGTGAATGAGTGCTGGGCCTCGCCCAGCCGCCTGTGCCAGCACACCTGCGAGAA CACACTTGGCTCCTACCGCTGTTCCTGTGCCTCTGGCTTTGTGCTGGCTGCCGATGGAAA GCACTGTGAAGATGTGAACGAGTGTGAGGCACAGCGCTGCAGCCAAGAGTGCGCCAACAT CTACGGCTCCTACCAGTGCTACTGCCGCCAGGGCTACCAGCTGGCCGAAGACGGGCACAC CTGCATAGACATTGATGAGTGTGCTCAGGGTGCCGGCGTCCTCTGCACCTTCCGCTGCAT CAACGTGCCAGGGAGCTACCAATGTGCATGCCCGGAGCGTGGCTACACCATGACAGCCAA CGGGAGGTCCTGCAAGGACCTGGACGAGTGTGCACTGGGCACCCACAACTGCTCCGAGGC CGAGACCTGCCATAACATCCAGGGCAGCTTCCGCTGCCTGCGCTTTGATTGCCCTCCCAA CTATGTCCGCGTCTCTGAAACGAAGTGTGAGCGCACCCTGTGCCAGGACTTCGTGGAGTG CCAGAACGCTCCTGCGCGGATTACGCACTACCGTCTCAACTTCCAGACTGGGCTGCTGGT GCCCGCACACATCTTCCGCATCAGCCCGGTGCCCGCCTTCGCTGGTGATACCATTGCGCT GACCATCACCAAGGGCAATGAGGAGGGGTACTTTGGCACGCGCCGCCTCAACGCTTACAC GGGCGTCGTCTTCCTGCAGCGGTCGGTGCGCGAGCCGCGGGACTTTGCCCTGGACGTGGA GATGAAGCTCTGGCGGCAGGGCTCCGTCACCACCTTCCTGGCCAAGATGCACATCTTCTT CACCACCTTTGCCCTGTGAAGCAAGGCTGGCCACGTGCGCAGAGCCCGGATTCCCCCTCC CCCGACAGTCTGCGTTGGGTGGGGGCGGGTGCTGCAGTGGGTTTGCTCCCACCCTGTAAA GTAACTTAATTTTGCTGACTCACTCCTCACTTTTGGTCTCTCCCCGGCCAGAGGGAGCCT TGGAGGGTAGTTCCAGGGGCCCTGTGGGTGGGGTGGGAGGATCAGAGTCTATATGTGACC AAGACTGGAAATGGCGACCACGTGGGAGCTTTTGGACTCAACTGGGTGACCTGTCCCCAA AGATGATGCTCTGATGTTCCACTGTGATTAGCTCTTCACTTTTTTTTTAAGAAAATCATT TTTAAGTGTTTTTGTTTAATTATAAAAGTAGTACATGTACATTGCAAATATATATATATT CAAATAGTACAAAAGGGTTTTAAAGTAAAAAAGTGAAAAAGAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 1-166, gnl|bosTau2|chr22 (46000660-46000495) | |
| 1-166, gnl|Hg17|chr3 (13642947-13643102) | |
| 1-166, gnl|Mm7|chr6 (91345666-91345808) | |
| 272-419, gnl|bosTau2|chr22 (45997830-45997683) | |
| 272-419, gnl|canFam2|chr20 (6928952-6929088) | |
| 272-419, gnl|danRer3|chr17 (28262300-28262419) | |
| 272-419, gnl|dasNov1|scaffold_172037 (4928-4822) | |
| 272-419, gnl|echTel1|scaffold_254123 (9019-8879) | |
| 272-419, gnl|fr1|chrUn (116776647-116776517) | |
| 272-419, gnl|hg17|chr3 (13645378-13645515) | |
| 272-419, gnl|Hg17|chr3 (13645405-13645552) | |
| 272-419, gnl|loxAfr1|scaffold_12059 (40743-40626) | |
| 272-419, gnl|mm7|chr6 (91348018-91348153) | |
| 272-419, gnl|Mm7|chr6 (91348043-91348190) | |
| 272-419, gnl|monDom2|scaffold_5 (49907165-49907283) | |
| 272-419, gnl|oryCun1|scaffold_184121 (9802-9935) | |
| 272-419, gnl|panTro1|chr2 (14212264-14212401) | |
| 272-419, gnl|rheMac2|chr2 (47402553-47402416) | |
| 272-419, gnl|rn3|chr4 (125678613-125678748) | |
| 272-419, gnl|tetNig1|chr9 (6907168-6907034) | |
| 665-788, gnl|bosTau2|chr22 (45995264-45995141) | |
| 665-788, gnl|canFam2|chr20 (6931778-6931902) | |
| 665-788, gnl|danRer3|chr17 (28269711-28269836) | |
| 665-788, gnl|dasNov1|scaffold_172037 (3609-3484) | |
| 665-788, gnl|echTel1|scaffold_307407 (7691-7818) | |
| 665-788, gnl|fr1|chrUn (116775142-116775018) | |
| 665-788, gnl|galGal2|chr12 (5930877-5931000) | |
| 665-788, gnl|hg17|chr3 (13647195-13647319) | |
| 665-788, gnl|Hg17|chr3 (13647193-13647316) | |
| 665-788, gnl|loxAfr1|scaffold_49900 (1257-1381) | |
| 665-788, gnl|mm7|chr6 (91350859-91350983) | |
| 665-788, gnl|Mm7|chr6 (91350859-91350980) | |
| 665-788, gnl|monDom2|scaffold_5 (49914955-49915079) | |
| 665-788, gnl|oryCun1|scaffold_133612 (4507-4637) | |
| 665-788, gnl|panTro1|chr2 (14214174-14214298) | |
| 665-788, gnl|rheMac2|chr2 (47400764-47400640) | |
| 665-788, gnl|rn3|chr4 (125681304-125681428) | |
| 665-788, gnl|tetNig1|chr9 (6905618-6905494) | |
| 665-788, gnl|xenTro1|scaffold_1092 (95618-95742) | |
| 1042-1437, gnl|bosTau2|chr22 (45990108-45989708) | |
| 1042-1437, gnl|Hg17|chr3 (13654063-13654440) | |
| 1042-1437, gnl|Mm7|chr6 (91353848-91354211) | |
| 1459-1845, gnl|bosTau2|chr22 (45989656-45989261) | |
| 1459-1845, gnl|Hg17|chr3 (13654475-13654905) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-166, gnl|bosTau2|chr22 (46000660-46000495) | |
| 1-166, gnl|Hg17|chr3 (13642947-13643102) | |
| 1-166, gnl|Mm7|chr6 (91345666-91345808) | |
| 272-419, gnl|bosTau2|chr22 (45997830-45997683) | |
| 272-419, gnl|canFam2|chr20 (6928952-6929088) | |
| 272-419, gnl|danRer3|chr17 (28262300-28262419) | |
| 272-419, gnl|dasNov1|scaffold_172037 (4928-4822) | |
| 272-419, gnl|echTel1|scaffold_254123 (9019-8879) | |
| 272-419, gnl|fr1|chrUn (116776647-116776517) | |
| 272-419, gnl|hg17|chr3 (13645378-13645515) | |
| 272-419, gnl|Hg17|chr3 (13645405-13645552) | |
| 272-419, gnl|loxAfr1|scaffold_12059 (40743-40626) | |
| 272-419, gnl|mm7|chr6 (91348018-91348153) | |
| 272-419, gnl|Mm7|chr6 (91348043-91348190) | |
| 272-419, gnl|monDom2|scaffold_5 (49907165-49907283) | |
| 272-419, gnl|oryCun1|scaffold_184121 (9802-9935) | |
| 272-419, gnl|panTro1|chr2 (14212264-14212401) | |
| 272-419, gnl|rheMac2|chr2 (47402553-47402416) | |
| 272-419, gnl|rn3|chr4 (125678613-125678748) | |
| 272-419, gnl|tetNig1|chr9 (6907168-6907034) | |
| 665-788, gnl|bosTau2|chr22 (45995264-45995141) | |
| 665-788, gnl|canFam2|chr20 (6931778-6931902) | |
| 665-788, gnl|danRer3|chr17 (28269711-28269836) | |
| 665-788, gnl|dasNov1|scaffold_172037 (3609-3484) | |
| 665-788, gnl|echTel1|scaffold_307407 (7691-7818) | |
| 665-788, gnl|fr1|chrUn (116775142-116775018) | |
| 665-788, gnl|galGal2|chr12 (5930877-5931000) | |
| 665-788, gnl|hg17|chr3 (13647195-13647319) | |
| 665-788, gnl|Hg17|chr3 (13647193-13647316) | |
| 665-788, gnl|loxAfr1|scaffold_49900 (1257-1381) | |
| 665-788, gnl|mm7|chr6 (91350859-91350983) | |
| 665-788, gnl|Mm7|chr6 (91350859-91350980) | |
| 665-788, gnl|monDom2|scaffold_5 (49914955-49915079) | |
| 665-788, gnl|oryCun1|scaffold_133612 (4507-4637) | |
| 665-788, gnl|panTro1|chr2 (14214174-14214298) | |
| 665-788, gnl|rheMac2|chr2 (47400764-47400640) | |
| 665-788, gnl|rn3|chr4 (125681304-125681428) | |
| 665-788, gnl|tetNig1|chr9 (6905618-6905494) | |
| 665-788, gnl|xenTro1|scaffold_1092 (95618-95742) | |
| 1042-1437, gnl|bosTau2|chr22 (45990108-45989708) | |
| 1042-1437, gnl|Hg17|chr3 (13654063-13654440) | |
| 1042-1437, gnl|Mm7|chr6 (91353848-91354211) | |
| 1459-1845, gnl|bosTau2|chr22 (45989656-45989261) | |
| 1459-1845, gnl|Hg17|chr3 (13654475-13654905) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| amn (0.417711) | |
| aor (0.390549) | |
| cly (0.361925) | |
| fat (0.294855) | |
| ese (0.253004) | |
| eep (0.245128) | |
| nms (0.213858) | |
| mas (0.210305) | |
| fbs (0.175346) | |
| csp (0.161186) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| eru (0.120048) | |
| clu (0.119646) | |
| med (0.116252) | |
| jca (0.11396) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| aor (0.390549) | |
| cly (0.361925) | |
| fat (0.294855) | |
| ese (0.253004) | |
| eep (0.245128) | |
| nms (0.213858) | |
| mas (0.210305) | |
| fbs (0.175346) | |
| csp (0.161186) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| eru (0.120048) | |
| clu (0.119646) | |
| med (0.116252) | |
| jca (0.11396) |