Non-Coding RNA Search

Ss1.1-Pig4-TMW8068C18.3

Sequence:


               
               TCTCCGGCACCGAAGAGCCTTCCGGGAGTACCAGACTGCAATTAAAAAACAACCCCCCCC
CCCCAAAAAAAAGATGAGAAATTTTCTTCTGAATGACCTTAAAGGTGATCGGCTTTAAAG
AATATGTTTACATATGCATATCGCTGCACTCAGTCGGACTGAAAGTATTACAAGGAAAAC
AGATCATTCAAGAAAGGAAAGAAGGCCCAAATATTGGCTCTGGGCCGGCTGTTCTTTGAG
GCACTGTGTTTAACGAAGGTAGAAATGCATTCAGTGTTTCCAAATATTACCGAATTTCGA
CCTTTGCTTACAAGAAGTAGTCTCTCTGCATAGGATGTGGTATATATCTCTGTTAATTTT
AAAATGTGGGGCAAAGTTACTGTTTCTAGACAACCCAATTGTTTTCCCTGTGCTGCTTTG
TAAAAGGACATTGGCGCAAGTGACTTCTGCCACAGCGGGGATTTCATAACGGATTTTACA
ATGCTAACGTGGTTTGCCTTGGGGGGAAAAACTGGCAAATAGAATCCTTGTCACTGATAA
GCAAAGGAAACCCTGATTTTTTTGTAAATTATGTGAGACAAGTTGTTTATGGATTTTTAT
ATGAATTACAATTTACTGTACATCAAATATTAGTCTCAGAGGAGTTAATTTATGTAAAGT
GTTTAAAAAGTTTATACTTAAAAAATAAAACGATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTCCGGCACCGAAGAGCCTTCCGGGAGTACCAGACTGCAATTAAAAAACAACCCCCCCC
CCCCAAAAAAAAGATGAGAAATTTTCTTCTGAATGACCTTAAAGGTGATCGGCTTTAAAG
AATATGTTTACATATGCATATCGCTGCACTCAGTCGGACTGAAAGTATTACAAGGAAAAC
AGATCATTCAAGAAAGGAAAGAAGGCCCAAATATTGGCTCTGGGCCGGCTGTTCTTTGAG
GCACTGTGTTTAACGAAGGTAGAAATGCATTCAGTGTTTCCAAATATTACCGAATTTCGA
CCTTTGCTTACAAGAAGTAGTCTCTCTGCATAGGATGTGGTATATATCTCTGTTAATTTT
AAAATGTGGGGCAAAGTTACTGTTTCTAGACAACCCAATTGTTTTCCCTGTGCTGCTTTG
TAAAAGGACATTGGCGCAAGTGACTTCTGCCACAGCGGGGATTTCATAACGGATTTTACA
ATGCTAACGTGGTTTGCCTTGGGGGGAAAAACTGGCAAATAGAATCCTTGTCACTGATAA
GCAAAGGAAACCCTGATTTTTTTGTAAATTATGTGAGACAAGTTGTTTATGGATTTTTAT
ATGAATTACAATTTACTGTACATCAAATATTAGTCTCAGAGGAGTTAATTTATGTAAAGT
GTTTAAAAAGTTTATACTTAAAAAATAAAACGATAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               179-280, + strand, RNAz p=0.997606

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               179-280, + strand, RNAz p=0.997606

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK001336, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK001336, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-696, gnl|bosTau2|chr27 (7101135-7101832)
               

               
               1-696, gnl|Hg17|chr4 (184096724-184097423)
               

               
               1-696, gnl|Mm7|chr8 (47002099-47001394)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-696, gnl|bosTau2|chr27 (7101135-7101832)
               

               
               1-696, gnl|Hg17|chr4 (184096724-184097423)
               

               
               1-696, gnl|Mm7|chr8 (47002099-47001394)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               amn (0.417711)
               

               
               nms (0.213858)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               nms (0.213858)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)

	1-696, gnl\|bosTau2\|chr27 (7101135-7101832)
	1-696, gnl\|Hg17\|chr4 (184096724-184097423)
	1-696, gnl\|Mm7\|chr8 (47002099-47001394)