Non-Coding RNA Search

Ss1.1-Pig4-TMW8068D09.3

Sequence:


               
               TGATTTAATTAACTCCATTTTGTACCTAGAATACAGCATAAAATATGTTATTGAGCTGTT
GGAACTCTCAAGGAAAAACAAGTTTGTATCGATTTTATGATGATTTTCATTTCTGCATAG
GTGTTCTAATTCACATTTGAAGGAAATAGGCACACTCTCCAGCACTCTCAAATCAGAGAT
TATTTATTTTTGATTAGGATTTGTTTACTAAAAACCCACAAGCTGCTTTATAGTCACTTG
AATTGAGTGATACCTTAAAAGACATACAGTGAAAATGAACCCCGTCATACCACTGTGCCT
AGTTATTTCAGGGTTCCTCTATCAGTTCCTCATTTTGCAGATTTATTCCAATACCGAGGT
ATGGTTGAACCAGCTGTCCGGCCTTAACTCTTTTTAGTGCCCCTCTGCTAACATTCTTTT
AACTGAGTGATTTGTATATGTTTTAACTGTCCAATGTTTGGATTTTACCTCTTGATAGCT
CCATTTGTCCCTGGTGCTGCTTTTAAAGATGTAGGGCCACGTGATCAGGTATCAAGTTGA
GTAGGTACGCAGTTGGCCTGGTTATGTATCTGTGCCTGTTTTATCTTCTCCCAGGAAGAG
CTGCTTTGGTATACTTAGATGTTTACTTAGATTCAGATAAAGAACGGGGCAGCAATCTTG
GAAAGCTTTCTGAAGCCTATAAGAACCTGAAGGGATTTGGAGGGGGAATAGTAACAAAGG
CTGCCTTTATGTCTTTGAACATGAAGCACATAAATGTATGTTCTGTAAAGACTAAAGCGA
TTGTTATACCAGGGCTTCCTGACCTCTGGGAGAGACTTTGAAAATAGCAGAAAGGTACAC
AAAGTGAAATGAATTTGGTTGGCTTGCTTTATCTGGTTTCTCATTTTCTTTCAATTTAAA
CCTGAATATAACGCCCTTCTCCAATATCTACCCGCAGTCTCCTGGTTGGGAAGCCCTGTA
TTAAATTTTGAGAATGTACCCAGTATCTTTTTTTTTTTTGTACAGTGCTTTACACCTGCT
AAAAATTAACTTGTTTAATGCAAAACAAGACCTTGAAAGGTCAGTCATATTAAAGCTGGT
TTGATTATTAATAGTTATCTTTTAGGAAGAAGCTTTTTCCCTATGTAAGATGTCATACTG
CAGATTTAAAATATAGACTATCAATAAAATGCATGAAGTGATAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATTTAATTAACTCCATTTTGTACCTAGAATACAGCATAAAATATGTTATTGAGCTGTT
GGAACTCTCAAGGAAAAACAAGTTTGTATCGATTTTATGATGATTTTCATTTCTGCATAG
GTGTTCTAATTCACATTTGAAGGAAATAGGCACACTCTCCAGCACTCTCAAATCAGAGAT
TATTTATTTTTGATTAGGATTTGTTTACTAAAAACCCACAAGCTGCTTTATAGTCACTTG
AATTGAGTGATACCTTAAAAGACATACAGTGAAAATGAACCCCGTCATACCACTGTGCCT
AGTTATTTCAGGGTTCCTCTATCAGTTCCTCATTTTGCAGATTTATTCCAATACCGAGGT
ATGGTTGAACCAGCTGTCCGGCCTTAACTCTTTTTAGTGCCCCTCTGCTAACATTCTTTT
AACTGAGTGATTTGTATATGTTTTAACTGTCCAATGTTTGGATTTTACCTCTTGATAGCT
CCATTTGTCCCTGGTGCTGCTTTTAAAGATGTAGGGCCACGTGATCAGGTATCAAGTTGA
GTAGGTACGCAGTTGGCCTGGTTATGTATCTGTGCCTGTTTTATCTTCTCCCAGGAAGAG
CTGCTTTGGTATACTTAGATGTTTACTTAGATTCAGATAAAGAACGGGGCAGCAATCTTG
GAAAGCTTTCTGAAGCCTATAAGAACCTGAAGGGATTTGGAGGGGGAATAGTAACAAAGG
CTGCCTTTATGTCTTTGAACATGAAGCACATAAATGTATGTTCTGTAAAGACTAAAGCGA
TTGTTATACCAGGGCTTCCTGACCTCTGGGAGAGACTTTGAAAATAGCAGAAAGGTACAC
AAAGTGAAATGAATTTGGTTGGCTTGCTTTATCTGGTTTCTCATTTTCTTTCAATTTAAA
CCTGAATATAACGCCCTTCTCCAATATCTACCCGCAGTCTCCTGGTTGGGAAGCCCTGTA
TTAAATTTTGAGAATGTACCCAGTATCTTTTTTTTTTTTGTACAGTGCTTTACACCTGCT
AAAAATTAACTTGTTTAATGCAAAACAAGACCTTGAAAGGTCAGTCATATTAAAGCTGGT
TTGATTATTAATAGTTATCTTTTAGGAAGAAGCTTTTTCCCTATGTAAGATGTCATACTG
CAGATTTAAAATATAGACTATCAATAAAATGCATGAAGTGATAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1182, gnl|bosTau2|chrX (21715423-21716596)
               

               
               1-1182, gnl|Hg17|chrX (73589494-73588347)
               

               
               1-1182, gnl|Mm7|chrX (99285727-99284523)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1182, gnl|bosTau2|chrX (21715423-21716596)
               

               
               1-1182, gnl|Hg17|chrX (73589494-73588347)
               

               
               1-1182, gnl|Mm7|chrX (99285727-99284523)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               fce (0.543183)
               

               
               pro (0.512033)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               liv (0.146284)
               

               
               ese (0.126502)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               pro (0.512033)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               liv (0.146284)
               

               
               ese (0.126502)

	1-1182, gnl\|bosTau2\|chrX (21715423-21716596)
	1-1182, gnl\|Hg17\|chrX (73589494-73588347)
	1-1182, gnl\|Mm7\|chrX (99285727-99284523)

	fce (0.543183)
	pro (0.512033)
	spc (0.226732)
	fcc (0.197785)
	eje (0.197668)
	fty (0.17584)
	fbs (0.175346)
	liv (0.146284)
	ese (0.126502)