Non-Coding RNA Search

Ss1.1-Pig4-TMW8068D11.3

Sequence:


               
               GGAGAAGAAGGTCACCATCCTGGAGCTGTTCCGCTCGGCCGCCTACCGCCAGCCCATCCT
CATCGCCGTGGTGCTGCAGCTGTCCCAGCAGCTGTCGGGCATCAACGCGGTTTTCTATTA
CTCCACAAGCATCTTCGAGAAGGCGGGCGTGCAGCAGCCTGTGTATGCCACCATCGGCTC
CGGCATCGTCAACACGGCCTTCACTGTCGTGTCGCTGTTCGTGGTGGAACGAGCCGGCCG
GCGGACCCTGCACCTCATAGGCCTGGCTGGCATGGCGGGCTGCGCGGTGCTCATGACCAT
CGCCTTGGCACTGCTGGAGCAGCTGCCCTGGATGTCCTACCTGAGCATCGTGGCCATCTT
TGGCTTCGTGGCCTTCTTTGAAGTGGGCCCTGGCCCCATCCCATGGTTCATTGTGGCCGA
ACTCTTCAGCCAGGGCCCTCGCCCGGCTGCCATTGCCGTCGCTGGCTTCTCCAACTGGAC
CTCGAATTTCATTGTGGGCATGTGCTTCCAGTATGTGGAGCAACTGTGCGGCCCCTACGT
CTTCATCATCTTCACGGTGCTCCTGGTCCTGTTCTTCATCTTCACCTACTTCAAAGTTCC
CGAGACCAAAGGCCGGACCTTCGATGAGATTGCTTCCGGCTTCCGGCAGGGGGGAGCGAG
CCAAAGCGACAAGACACCCGAGGAGCTGTTCCACCCCCTGGGGGCCGATTCCCAAGTGTG
AGGTGCCCCGCACCCCCAGCCCGGCCTGCTCCCAGCAGCCCAAGGATCTCTCGGAGCACA
GGCAGCTGAATGAGACTCAAACTGACAGATCTCAGCAGAGACGGGCCCCGGGCTCCTTCC
TTCAGCCAGCAGTGATGTCCCGAAGAATATTCAGGGCTCTGCGGCTCCAGGATTTTTAAC
AAAAGCAGGACTGTTGCTCAGATCCATTCAGACAAGCAACAGGTTTTATAATTTTTTTAT
TACTGATTTTGCTATTATTTTTGTATCAGCCAGTCTCCTTTACCCACATCCCACGCTTCA
CCTTGGAGGGCTCAGTGCCTGAGGACGGGGACCGAGCCCTGCCTAGACACTTGCCTTCTC
CGCCAAGCTAATCCGTAGGGCTGGACCTGCGACCCCAGGACACACTAATCGAACTATGAA
CTCAGTCTTCTACCCCAAGAGGTGGCCCTGGCCACTCCCTTCCGCGGGTCTGAGTCTTCC
CACCCAGGGGCCAGGCTCCATTAGGATTCGCCCGCTCCCGTCCCTCCCTGCTCAAACACT
CTGTTTAATCTTCCCTTGCCTGAGACCAGTTGGGAGCACTGGGGTGCAGGGAGGGGAGGG
GAAGGGCCAGGGCTGCCAGGTTCCAGGCTCCCTTGCACTGAGGGCCAGACGATCACCATG
GGAGGCTGAGAACTCACTACTACTCAAGAAGACACGGACACTCCTGCCCTGCTGTGTGTA
TAGACGGAAGATATTTATATATATTTTTTGGTTGTCAATATTAAATACAGACACTAAGTT
ATAGTATATCCGGACAAACCAACTTGTAAATACACCACCTTCCTCACTCTGTAACCCACC
TAAGTAGATAAAAATGGCTGGTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGAAGAAGGTCACCATCCTGGAGCTGTTCCGCTCGGCCGCCTACCGCCAGCCCATCCT
CATCGCCGTGGTGCTGCAGCTGTCCCAGCAGCTGTCGGGCATCAACGCGGTTTTCTATTA
CTCCACAAGCATCTTCGAGAAGGCGGGCGTGCAGCAGCCTGTGTATGCCACCATCGGCTC
CGGCATCGTCAACACGGCCTTCACTGTCGTGTCGCTGTTCGTGGTGGAACGAGCCGGCCG
GCGGACCCTGCACCTCATAGGCCTGGCTGGCATGGCGGGCTGCGCGGTGCTCATGACCAT
CGCCTTGGCACTGCTGGAGCAGCTGCCCTGGATGTCCTACCTGAGCATCGTGGCCATCTT
TGGCTTCGTGGCCTTCTTTGAAGTGGGCCCTGGCCCCATCCCATGGTTCATTGTGGCCGA
ACTCTTCAGCCAGGGCCCTCGCCCGGCTGCCATTGCCGTCGCTGGCTTCTCCAACTGGAC
CTCGAATTTCATTGTGGGCATGTGCTTCCAGTATGTGGAGCAACTGTGCGGCCCCTACGT
CTTCATCATCTTCACGGTGCTCCTGGTCCTGTTCTTCATCTTCACCTACTTCAAAGTTCC
CGAGACCAAAGGCCGGACCTTCGATGAGATTGCTTCCGGCTTCCGGCAGGGGGGAGCGAG
CCAAAGCGACAAGACACCCGAGGAGCTGTTCCACCCCCTGGGGGCCGATTCCCAAGTGTG
AGGTGCCCCGCACCCCCAGCCCGGCCTGCTCCCAGCAGCCCAAGGATCTCTCGGAGCACA
GGCAGCTGAATGAGACTCAAACTGACAGATCTCAGCAGAGACGGGCCCCGGGCTCCTTCC
TTCAGCCAGCAGTGATGTCCCGAAGAATATTCAGGGCTCTGCGGCTCCAGGATTTTTAAC
AAAAGCAGGACTGTTGCTCAGATCCATTCAGACAAGCAACAGGTTTTATAATTTTTTTAT
TACTGATTTTGCTATTATTTTTGTATCAGCCAGTCTCCTTTACCCACATCCCACGCTTCA
CCTTGGAGGGCTCAGTGCCTGAGGACGGGGACCGAGCCCTGCCTAGACACTTGCCTTCTC
CGCCAAGCTAATCCGTAGGGCTGGACCTGCGACCCCAGGACACACTAATCGAACTATGAA
CTCAGTCTTCTACCCCAAGAGGTGGCCCTGGCCACTCCCTTCCGCGGGTCTGAGTCTTCC
CACCCAGGGGCCAGGCTCCATTAGGATTCGCCCGCTCCCGTCCCTCCCTGCTCAAACACT
CTGTTTAATCTTCCCTTGCCTGAGACCAGTTGGGAGCACTGGGGTGCAGGGAGGGGAGGG
GAAGGGCCAGGGCTGCCAGGTTCCAGGCTCCCTTGCACTGAGGGCCAGACGATCACCATG
GGAGGCTGAGAACTCACTACTACTCAAGAAGACACGGACACTCCTGCCCTGCTGTGTGTA
TAGACGGAAGATATTTATATATATTTTTTGGTTGTCAATATTAAATACAGACACTAAGTT
ATAGTATATCCGGACAAACCAACTTGTAAATACACCACCTTCCTCACTCTGTAACCCACC
TAAGTAGATAAAAATGGCTGGTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|11546038|gb|AAF75682.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|11546038|gb|AAF75682.2|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               830-1063, - strand, RNAz p=0.975309
               

               
               1142-1331, - strand, RNAz p=0.995463
               

               
               1438-1557, - strand, RNAz p=0.514747

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               830-1063, - strand, RNAz p=0.975309
               

               
               1142-1331, - strand, RNAz p=0.995463
               

               
               1438-1557, - strand, RNAz p=0.514747

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-111, gnl|bosTau2|chr11 (43024830-43024720)
               

               
               1-111, gnl|Hg17|chr1 (43064465-43064355)
               

               
               1-111, gnl|Mm7|chr4 (118509870-118509980)
               


               
               214-330, gnl|bosTau2|chr11 (43023901-43023786)
               

               
               214-330, gnl|Hg17|chr1 (43063798-43063683)
               

               
               214-330, gnl|Mm7|chr4 (118510807-118510922)
               


               
               519-1591, gnl|bosTau2|chr11 (43022031-43020941)
               

               
               519-1591, gnl|Hg17|chr1 (43062007-43060920)
               

               
               519-1591, gnl|Mm7|chr4 (118512683-118513769)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-111, gnl|bosTau2|chr11 (43024830-43024720)
               

               
               1-111, gnl|Hg17|chr1 (43064465-43064355)
               

               
               1-111, gnl|Mm7|chr4 (118509870-118509980)
               


               
               214-330, gnl|bosTau2|chr11 (43023901-43023786)
               

               
               214-330, gnl|Hg17|chr1 (43063798-43063683)
               

               
               214-330, gnl|Mm7|chr4 (118510807-118510922)
               


               
               519-1591, gnl|bosTau2|chr11 (43022031-43020941)
               

               
               519-1591, gnl|Hg17|chr1 (43062007-43060920)
               

               
               519-1591, gnl|Mm7|chr4 (118512683-118513769)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               eye (0.852515)
               

               
               amn (0.835422)
               

               
               eru (0.60024)
               

               
               fhi (0.508733)
               

               
               hyp (0.42851)
               

               
               pla (0.401016)
               

               
               nmm (0.398406)
               

               
               eep (0.367692)
               

               
               fce (0.271592)
               

               
               ese (0.253004)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               pty (0.142714)
               

               
               ebs (0.118301)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.852515)
               

               
               amn (0.835422)
               

               
               eru (0.60024)
               

               
               fhi (0.508733)
               

               
               hyp (0.42851)
               

               
               pla (0.401016)
               

               
               nmm (0.398406)
               

               
               eep (0.367692)
               

               
               fce (0.271592)
               

               
               ese (0.253004)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               pty (0.142714)
               

               
               ebs (0.118301)

	830-1063, - strand, RNAz p=0.975309
	1142-1331, - strand, RNAz p=0.995463
	1438-1557, - strand, RNAz p=0.514747

	1-111, gnl\|bosTau2\|chr11 (43024830-43024720)
	1-111, gnl\|Hg17\|chr1 (43064465-43064355)
	1-111, gnl\|Mm7\|chr4 (118509870-118509980)

	214-330, gnl\|bosTau2\|chr11 (43023901-43023786)
	214-330, gnl\|Hg17\|chr1 (43063798-43063683)
	214-330, gnl\|Mm7\|chr4 (118510807-118510922)

	519-1591, gnl\|bosTau2\|chr11 (43022031-43020941)
	519-1591, gnl\|Hg17\|chr1 (43062007-43060920)
	519-1591, gnl\|Mm7\|chr4 (118512683-118513769)

	eye (0.852515)
	amn (0.835422)
	eru (0.60024)
	fhi (0.508733)
	hyp (0.42851)
	pla (0.401016)
	nmm (0.398406)
	eep (0.367692)
	fce (0.271592)
	ese (0.253004)
	nms (0.213858)
	fcc (0.197785)
	nlu (0.191681)
	ton (0.1755)
	cli (0.152812)
	eli (0.151814)
	pty (0.142714)
	ebs (0.118301)