Non-Coding RNA Search

Ss1.1-Pig4-TMW8068D19.3

Sequence:


               
               CTATTTCTATTTCAGCAGTACAAAGGCATGTTTTTAAATCTATAAAATAAAGAATAAGGG
ATAGCTTTGTATTTTTGTCATTAACTAAATTGCACCAGAAATGTTTATGGAAGTATATCT
TTAAGACCATTTTATAAAACATAATGAAAAAATGATTGTGGAGGATTTTTATTTGCATGA
TCATCGTTAACCAAATTCCACTGCACATTAATTCTGTACATCAGTTCACAAAGAATGTTC
ATTGTAGATTTCGTTCAATGCCAATGAGTCTGTGATTTTACAATTTGTTCACTTTTGGGA
AGATTATGATGTAAATTTTCCATTTTTCTGTAGAAAAATAGGTGCAATAATGATCAAAGT
TTTGATGTCCTGAGTCTTCATCTTAGGGAATTATCTTATTATTATGTTTAAGCTTAACAT
TTCATGTACTAACATTTGGAGGGCCACATACTCTAAACTAAAGTCAAATTAAGTATGTAT
AAAACGTTAACTGCTAACAGTGGTTAGCAAACTCTTCAGTGATAATGTTCATTTTGAAAA
TATGTACTGTATAAAATTAAGAAACTATTTAACTCACTGTAACAAGTTCCATTATGAAAA
TCTTATGATTCTTCAGTGAGATTATCTTGCTGCACTCTGTAGCAAATCCATTTAATCTAC
AATATAATAAAATTTCTTGCTGCAGTGCAACAGGAAGCTTTTTCAGTGATCTCCACTGTA
TATGTAAATTACAAATGTGGCTGTAAAACTTGTTCCAGGTATTAAAGGTTAAATTCCTTT
CTGTATCTTCTTACAACTTGTAAGTTTTTTAAGATTTCCTTTGCCCACTTGAAGAATGTC
AGGATCTTAAGAATTTGTTTAACTTAGACGTATCTCCCCTACCACATAGTATTATGTCAC
AGTGATGAACAATTGGTATTTAGATAGATAACCAATTTTCAGACACATTTTTGGATTTTC
TGTGAAGTTGAATAAACATGAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTATTTCTATTTCAGCAGTACAAAGGCATGTTTTTAAATCTATAAAATAAAGAATAAGGG
ATAGCTTTGTATTTTTGTCATTAACTAAATTGCACCAGAAATGTTTATGGAAGTATATCT
TTAAGACCATTTTATAAAACATAATGAAAAAATGATTGTGGAGGATTTTTATTTGCATGA
TCATCGTTAACCAAATTCCACTGCACATTAATTCTGTACATCAGTTCACAAAGAATGTTC
ATTGTAGATTTCGTTCAATGCCAATGAGTCTGTGATTTTACAATTTGTTCACTTTTGGGA
AGATTATGATGTAAATTTTCCATTTTTCTGTAGAAAAATAGGTGCAATAATGATCAAAGT
TTTGATGTCCTGAGTCTTCATCTTAGGGAATTATCTTATTATTATGTTTAAGCTTAACAT
TTCATGTACTAACATTTGGAGGGCCACATACTCTAAACTAAAGTCAAATTAAGTATGTAT
AAAACGTTAACTGCTAACAGTGGTTAGCAAACTCTTCAGTGATAATGTTCATTTTGAAAA
TATGTACTGTATAAAATTAAGAAACTATTTAACTCACTGTAACAAGTTCCATTATGAAAA
TCTTATGATTCTTCAGTGAGATTATCTTGCTGCACTCTGTAGCAAATCCATTTAATCTAC
AATATAATAAAATTTCTTGCTGCAGTGCAACAGGAAGCTTTTTCAGTGATCTCCACTGTA
TATGTAAATTACAAATGTGGCTGTAAAACTTGTTCCAGGTATTAAAGGTTAAATTCCTTT
CTGTATCTTCTTACAACTTGTAAGTTTTTTAAGATTTCCTTTGCCCACTTGAAGAATGTC
AGGATCTTAAGAATTTGTTTAACTTAGACGTATCTCCCCTACCACATAGTATTATGTCAC
AGTGATGAACAATTGGTATTTAGATAGATAACCAATTTTCAGACACATTTTTGGATTTTC
TGTGAAGTTGAATAAACATGAAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               400-718, - strand, RNAz p=0.990326

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               400-718, - strand, RNAz p=0.990326

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               654-750, + strand, RNAmicro p=0.99999

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               654-750, + strand, RNAmicro p=0.99999

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               406-718, BP396839 Homo sapiens pancreatic islet Homo sapiens cDNA clone 
(dbj|BP396839.1|), blast E-value=0, identity=89.81% 
               

               
               406-718, BX393294 Homo sapiens HELA CELLS COT 25-NORMALIZED Homo sapiens 
(emb|BX393294.2|), blast E-value=0, identity=89.49% 
               

               
               406-688, tz78b09.x1 NCI_CGAP_Pan1 Homo sapiens cDNA clone IMAGE 
(gb|AI636348.1|), blast E-value=0, identity=89.44% 
               

               
               400-718, 1407640 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN549347.1|), 
blast E-value=0, identity=95.61% 
               

               
               400-718, 1404952 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN742208.1|), 
blast E-value=0, identity=95.61% 
               

               
               400-718, Hw_FAT_27_050803_C12 Bos taurus CF-24-HW fat cDNA library Bos 
(gb|DV779405.1|), blast E-value=0, identity=95.61%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               406-718, BP396839 Homo sapiens pancreatic islet Homo sapiens cDNA clone 
(dbj|BP396839.1|), blast E-value=0, identity=89.81% 
               

               
               406-718, BX393294 Homo sapiens HELA CELLS COT 25-NORMALIZED Homo sapiens 
(emb|BX393294.2|), blast E-value=0, identity=89.49% 
               

               
               406-688, tz78b09.x1 NCI_CGAP_Pan1 Homo sapiens cDNA clone IMAGE 
(gb|AI636348.1|), blast E-value=0, identity=89.44% 
               

               
               400-718, 1407640 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN549347.1|), 
blast E-value=0, identity=95.61% 
               

               
               400-718, 1404952 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN742208.1|), 
blast E-value=0, identity=95.61% 
               

               
               400-718, Hw_FAT_27_050803_C12 Bos taurus CF-24-HW fat cDNA library Bos 
(gb|DV779405.1|), blast E-value=0, identity=95.61%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-984, gnl|bosTau2|chr11 (44199490-44198499)
               

               
               1-984, gnl|Hg17|chr13 (32249146-32250153)
               

               
               1-984, gnl|Mm7|chr5 (149742818-149743745)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-984, gnl|bosTau2|chr11 (44199490-44198499)
               

               
               1-984, gnl|Hg17|chr13 (32249146-32250153)
               

               
               1-984, gnl|Mm7|chr5 (149742818-149743745)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ret (0.3862)
               

               
               fco (0.314416)
               

               
               eye (0.170503)
               

               
               tra (0.123092)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.3862)
               

               
               fco (0.314416)
               

               
               eye (0.170503)
               

               
               tra (0.123092)

	406-718, BP396839 Homo sapiens pancreatic islet Homo sapiens cDNA clone (dbj\|BP396839.1\|), blast E-value=0, identity=89.81%
	406-718, BX393294 Homo sapiens HELA CELLS COT 25-NORMALIZED Homo sapiens (emb\|BX393294.2\|), blast E-value=0, identity=89.49%
	406-688, tz78b09.x1 NCI_CGAP_Pan1 Homo sapiens cDNA clone IMAGE (gb\|AI636348.1\|), blast E-value=0, identity=89.44%
	400-718, 1407640 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN549347.1\|), blast E-value=0, identity=95.61%
	400-718, 1404952 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN742208.1\|), blast E-value=0, identity=95.61%
	400-718, Hw_FAT_27_050803_C12 Bos taurus CF-24-HW fat cDNA library Bos (gb\|DV779405.1\|), blast E-value=0, identity=95.61%

	1-984, gnl\|bosTau2\|chr11 (44199490-44198499)
	1-984, gnl\|Hg17\|chr13 (32249146-32250153)
	1-984, gnl\|Mm7\|chr5 (149742818-149743745)