Non-Coding RNA Search

Ss1.1-Pig4-TMW8068E07.3

Sequence:


               
               ACAAAATATAGTTTTGAGGACCACCAGATCAGCATCACATAGATGGTTGTTAGAAATGCA
CAATCCCAGAAAACAGTGCATCTGGTCAATATAGTTTATGCCACTTTTCCATGGGAAAGC
TAACATTTCAGGCTTTTTTTTTTTTTTTTTTTTTTAATACTTAGCACTTTTTCTGTGCCT
TTGAGGCTCTCGGATGCTGTTTTTCACAGCAGGTGCAACACTTTTTTAAGATATTTTAAG
GAGAAAATAACATTATTTAGGCCATAGAAGCCTTTCAAAATATATTTTTATGCAAATCAG
ATACTAGGATACAATATTCAAATCCAAATATTGGTTTGTAGCTAATTTTGTTGCTTTATA
ACCAAAAAATGACATAAGCCACAAAGAAGTGGGATTAGGTAACAACTGCAACATGAAAAC
CTGATGTCTAAGACTGGGTACTGCTTATTAAGGTTACAAAATCATGGCCTTAATCTTTAT
ACGCAAGTACTTGAACTTTTGAAATACACAGTGGTTCTCAAAGTTTAGTCTTTCCATCAG
CAGTTATCACTTGTAAACTTGTAAGAATTACATTCTTGATTCTCATCCCAGACCTAGAGA
GTCAAATACTAGGTCTGGGGGCTAGCAGTCTGATTTAACAAGCCCTAAGGATGATTGTTG
ATGCATGCTAAAGTTTGGGAAATTCCGGAATAGTGCTTCTGGTATAATAAGTTTATACTA
AGTTTTGCATCACTAACTTGAATGCAGTTCCACCTGATCAAGTTTGAAAATGTATGAAGG
TTGGAAATGGGACACTAAAATAATGAAACCCAACCTCTATGCTTGGAGATAAGTGCACCC
ATGACCAAGCCTGTGAATTATAAAGAAGTTGATTTATAGCTGATGTAGTTAAAAGTTATT
GCACATTTACTTGATTGTCTACTATGTATGTTTGCAGGATTATTTATAAACTTTGTATGA
TCTTAAGTTTTTTCAAAACTACATTTTTTATGTGTGCAAGGTGAAAATAAAACTTATTTG
CCTGATAGCTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAAAATATAGTTTTGAGGACCACCAGATCAGCATCACATAGATGGTTGTTAGAAATGCA
CAATCCCAGAAAACAGTGCATCTGGTCAATATAGTTTATGCCACTTTTCCATGGGAAAGC
TAACATTTCAGGCTTTTTTTTTTTTTTTTTTTTTTAATACTTAGCACTTTTTCTGTGCCT
TTGAGGCTCTCGGATGCTGTTTTTCACAGCAGGTGCAACACTTTTTTAAGATATTTTAAG
GAGAAAATAACATTATTTAGGCCATAGAAGCCTTTCAAAATATATTTTTATGCAAATCAG
ATACTAGGATACAATATTCAAATCCAAATATTGGTTTGTAGCTAATTTTGTTGCTTTATA
ACCAAAAAATGACATAAGCCACAAAGAAGTGGGATTAGGTAACAACTGCAACATGAAAAC
CTGATGTCTAAGACTGGGTACTGCTTATTAAGGTTACAAAATCATGGCCTTAATCTTTAT
ACGCAAGTACTTGAACTTTTGAAATACACAGTGGTTCTCAAAGTTTAGTCTTTCCATCAG
CAGTTATCACTTGTAAACTTGTAAGAATTACATTCTTGATTCTCATCCCAGACCTAGAGA
GTCAAATACTAGGTCTGGGGGCTAGCAGTCTGATTTAACAAGCCCTAAGGATGATTGTTG
ATGCATGCTAAAGTTTGGGAAATTCCGGAATAGTGCTTCTGGTATAATAAGTTTATACTA
AGTTTTGCATCACTAACTTGAATGCAGTTCCACCTGATCAAGTTTGAAAATGTATGAAGG
TTGGAAATGGGACACTAAAATAATGAAACCCAACCTCTATGCTTGGAGATAAGTGCACCC
ATGACCAAGCCTGTGAATTATAAAGAAGTTGATTTATAGCTGATGTAGTTAAAAGTTATT
GCACATTTACTTGATTGTCTACTATGTATGTTTGCAGGATTATTTATAAACTTTGTATGA
TCTTAAGTTTTTTCAAAACTACATTTTTTATGTGTGCAAGGTGAAAATAAAACTTATTTG
CCTGATAGCTGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               83-200, + strand, RNAz p=0.911551

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               83-200, + strand, RNAz p=0.911551

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               5-425, gnl|bosTau2|chr17 (640306-639879)
               

               
               5-425, gnl|Hg17|chr3 (180593781-180594190)
               


               
               502-1025, gnl|bosTau2|chr17 (639007-638478)
               

               
               502-1025, gnl|Hg17|chr3 (180594645-180595419)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-425, gnl|bosTau2|chr17 (640306-639879)
               

               
               5-425, gnl|Hg17|chr3 (180593781-180594190)
               


               
               502-1025, gnl|bosTau2|chr17 (639007-638478)
               

               
               502-1025, gnl|Hg17|chr3 (180594645-180595419)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               ski (0.440205)
               

               
               gul (0.355177)
               

               
               vin (0.332557)
               

               
               ssp (0.271039)
               

               
               thg (0.253582)
               

               
               eje (0.197668)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               tbr (0.154178)
               

               
               ctl (0.153069)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.440205)
               

               
               gul (0.355177)
               

               
               vin (0.332557)
               

               
               ssp (0.271039)
               

               
               thg (0.253582)
               

               
               eje (0.197668)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               tbr (0.154178)
               

               
               ctl (0.153069)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	5-425, gnl\|bosTau2\|chr17 (640306-639879)
	5-425, gnl\|Hg17\|chr3 (180593781-180594190)

	502-1025, gnl\|bosTau2\|chr17 (639007-638478)
	502-1025, gnl\|Hg17\|chr3 (180594645-180595419)

	ski (0.440205)
	gul (0.355177)
	vin (0.332557)
	ssp (0.271039)
	thg (0.253582)
	eje (0.197668)
	sag (0.182715)
	sin (0.174948)
	tbr (0.154178)
	ctl (0.153069)
	bfe (0.149858)
	lin (0.145603)
	spl (0.143184)
	lnt (0.142308)
	ste (0.135208)
	pla (0.133672)
	spc (0.113366)
	jej (0.0989218)
	ldo (0.0970026)