Ss1.1-Pig4-TMW8068F09.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCTCGGCCACATCTGCTGCCAAACTGGGGAGCCCCAGCGAGGCCACCACACCCTGGACT CCCAGTCCCAGTGAGAAGAATTCTTCCCTCTCAAGGTCTTTGTCCACGCTGACAGCCAGC AGGAACAACGACAGCAGCCCACCTCTGGTGACGCCGCCCCAGTCGCCCCCATCCCCGCAG TCGCCAGCCACGACGCATGCCCATCGGCAGGGGGAGCGTCGCCGGGAGCTGGTGAGGTCG CAGACTCTGCCCCGAACGTCGGGGGCACAGGCCCGGAAGGCGTTGTTTGAGAAATGGGAG CAGGATACAGCGGGCAAGGGGCGGGGTGAGACCCGGGCAAAGCTGAAGCGCTCGCAGAGC TTCGGGGTGGCCAGTGCCAGCAGCATCAAGCAGATCCTGCTCGAGTGGTGCCGCAGCAAG ACGCTCGGCTACCAGCACGTGGACCTGCAGAACTTCTCCTCCAGCTGGAGTGACGGCATG GCCTTCTGCGCCCTGGTGCACTCCTTCTTCCCCGACGCCTTCGACTACAACGCCCTGAGC CCCACGCAGCGGCGGCAGAACTTCGAGCTGGCCTTCACCATGGCCGAGAACCTGGCCAAC TGCGAGCGCCTCATTGAGGTGGAGGACATGATGCTGATGGGCCGAAAGCCGGACCCCATG TGTGTCTTCACTTACGTCCAGTCTCTGTACAACCACCTGCGTCGCTTTGAGTGAAGCCCC TTGGGGCTGGAGAGCCAACCCCCGCACCAGGAGACCACGGGGCTGCCTGTGTAACCGAGT CATGATCCCCCTGCCCCCAAGAGTTGCATTCGGGTGTGAGAGCGCGTTTGGCCTGTGCCC TGTGGCTGCGCTCCCCGTTACCCATGGATAGGACTGCTGAGCTGCTGAGCTGCGCTCCCA CGCAAGGAAATGTTACCAGAGAGAGACATTGGTGCTAAGAAATTCCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCTCGGCCACATCTGCTGCCAAACTGGGGAGCCCCAGCGAGGCCACCACACCCTGGACT CCCAGTCCCAGTGAGAAGAATTCTTCCCTCTCAAGGTCTTTGTCCACGCTGACAGCCAGC AGGAACAACGACAGCAGCCCACCTCTGGTGACGCCGCCCCAGTCGCCCCCATCCCCGCAG TCGCCAGCCACGACGCATGCCCATCGGCAGGGGGAGCGTCGCCGGGAGCTGGTGAGGTCG CAGACTCTGCCCCGAACGTCGGGGGCACAGGCCCGGAAGGCGTTGTTTGAGAAATGGGAG CAGGATACAGCGGGCAAGGGGCGGGGTGAGACCCGGGCAAAGCTGAAGCGCTCGCAGAGC TTCGGGGTGGCCAGTGCCAGCAGCATCAAGCAGATCCTGCTCGAGTGGTGCCGCAGCAAG ACGCTCGGCTACCAGCACGTGGACCTGCAGAACTTCTCCTCCAGCTGGAGTGACGGCATG GCCTTCTGCGCCCTGGTGCACTCCTTCTTCCCCGACGCCTTCGACTACAACGCCCTGAGC CCCACGCAGCGGCGGCAGAACTTCGAGCTGGCCTTCACCATGGCCGAGAACCTGGCCAAC TGCGAGCGCCTCATTGAGGTGGAGGACATGATGCTGATGGGCCGAAAGCCGGACCCCATG TGTGTCTTCACTTACGTCCAGTCTCTGTACAACCACCTGCGTCGCTTTGAGTGAAGCCCC TTGGGGCTGGAGAGCCAACCCCCGCACCAGGAGACCACGGGGCTGCCTGTGTAACCGAGT CATGATCCCCCTGCCCCCAAGAGTTGCATTCGGGTGTGAGAGCGCGTTTGGCCTGTGCCC TGTGGCTGCGCTCCCCGTTACCCATGGATAGGACTGCTGAGCTGCTGAGCTGCGCTCCCA CGCAAGGAAATGTTACCAGAGAGAGACATTGGTGCTAAGAAATTCCTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 135-318, gnl|bosTau2|chr19 (19688858-19688675) | |
| 135-318, gnl|Hg17|chr17 (4445186-4445372) | |
| 135-318, gnl|Mm7|chr11 (72483104-72482921) | |
| 434-588, gnl|bosTau2|chr17 (44276184-44276030) | |
| 434-588, gnl|canFam2|chr18 (41690844-41690678) | |
| 434-588, gnl|danRer3|chrUn (70832273-70832109) | |
| 434-588, gnl|dasNov1|scaffold_12196 (50829-50995) | |
| 434-588, gnl|echTel1|scaffold_260605 (2638-2476) | |
| 434-588, gnl|fr1|chrUn (72571553-72571712) | |
| 434-588, gnl|galGal2|chrUn (103662438-103662604) | |
| 434-588, gnl|hg17|chr11 (57070545-57070711) | |
| 434-588, gnl|Hg17|chr22 (29820283-29820437) | |
| 434-588, gnl|loxAfr1|scaffold_11027 (28190-28028) | |
| 434-588, gnl|Mm7|chr11 (3473973-3473819) | |
| 434-588, gnl|mm7|chr2 (84659169-84658999) | |
| 434-588, gnl|monDom2|scaffold_33 (20695155-20695319) | |
| 434-588, gnl|oryCun1|scaffold_199424 (44002-44165) | |
| 434-588, gnl|panTro1|chr9 (57979661-57979827) | |
| 434-588, gnl|rheMac2|chr14 (15871486-15871320) | |
| 434-588, gnl|rn3|chr3 (67917932-67917762) | |
| 434-588, gnl|tetNig1|chr4 (1450730-1450567) | |
| 434-588, gnl|xenTro1|scaffold_207 (1227365-1227209) | |
| 592-705, gnl|bosTau2|chr17 (44271776-44271663) | |
| 592-705, gnl|canFam2|chr5 (33575435-33575592) | |
| 592-705, gnl|danRer3|chr15 (31356581-31356734) | |
| 592-705, gnl|dasNov1|scaffold_30622 (12873-13030) | |
| 592-705, gnl|echTel1|scaffold_300193 (13323-13174) | |
| 592-705, gnl|fr1|chrUn (98465886-98466021) | |
| 592-705, gnl|galGal2|chrUn (103663906-103664059) | |
| 592-705, gnl|hg17|chr17 (4457400-4457556) | |
| 592-705, gnl|Hg17|chr22 (29824860-29824973) | |
| 592-705, gnl|loxAfr1|scaffold_70057 (2645-2496) | |
| 592-705, gnl|mm7|chr11 (72472994-72472849) | |
| 592-705, gnl|Mm7|chr11 (3469826-3469713) | |
| 592-705, gnl|monDom2|scaffold_33 (20700642-20700753) | |
| 592-705, gnl|oryCun1|scaffold_182579 (6768-6633) | |
| 592-705, gnl|panTro1|chr19 (4767989-4768145) | |
| 592-705, gnl|rheMac2|chr16 (4388180-4388336) | |
| 592-705, gnl|rn3|chr10 (59291330-59291192) | |
| 592-705, gnl|tetNig1|chr16 (6841410-6841533) | |
| 592-705, gnl|xenTro1|scaffold_138 (1587512-1587372) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 135-318, gnl|bosTau2|chr19 (19688858-19688675) | |
| 135-318, gnl|Hg17|chr17 (4445186-4445372) | |
| 135-318, gnl|Mm7|chr11 (72483104-72482921) | |
| 434-588, gnl|bosTau2|chr17 (44276184-44276030) | |
| 434-588, gnl|canFam2|chr18 (41690844-41690678) | |
| 434-588, gnl|danRer3|chrUn (70832273-70832109) | |
| 434-588, gnl|dasNov1|scaffold_12196 (50829-50995) | |
| 434-588, gnl|echTel1|scaffold_260605 (2638-2476) | |
| 434-588, gnl|fr1|chrUn (72571553-72571712) | |
| 434-588, gnl|galGal2|chrUn (103662438-103662604) | |
| 434-588, gnl|hg17|chr11 (57070545-57070711) | |
| 434-588, gnl|Hg17|chr22 (29820283-29820437) | |
| 434-588, gnl|loxAfr1|scaffold_11027 (28190-28028) | |
| 434-588, gnl|Mm7|chr11 (3473973-3473819) | |
| 434-588, gnl|mm7|chr2 (84659169-84658999) | |
| 434-588, gnl|monDom2|scaffold_33 (20695155-20695319) | |
| 434-588, gnl|oryCun1|scaffold_199424 (44002-44165) | |
| 434-588, gnl|panTro1|chr9 (57979661-57979827) | |
| 434-588, gnl|rheMac2|chr14 (15871486-15871320) | |
| 434-588, gnl|rn3|chr3 (67917932-67917762) | |
| 434-588, gnl|tetNig1|chr4 (1450730-1450567) | |
| 434-588, gnl|xenTro1|scaffold_207 (1227365-1227209) | |
| 592-705, gnl|bosTau2|chr17 (44271776-44271663) | |
| 592-705, gnl|canFam2|chr5 (33575435-33575592) | |
| 592-705, gnl|danRer3|chr15 (31356581-31356734) | |
| 592-705, gnl|dasNov1|scaffold_30622 (12873-13030) | |
| 592-705, gnl|echTel1|scaffold_300193 (13323-13174) | |
| 592-705, gnl|fr1|chrUn (98465886-98466021) | |
| 592-705, gnl|galGal2|chrUn (103663906-103664059) | |
| 592-705, gnl|hg17|chr17 (4457400-4457556) | |
| 592-705, gnl|Hg17|chr22 (29824860-29824973) | |
| 592-705, gnl|loxAfr1|scaffold_70057 (2645-2496) | |
| 592-705, gnl|mm7|chr11 (72472994-72472849) | |
| 592-705, gnl|Mm7|chr11 (3469826-3469713) | |
| 592-705, gnl|monDom2|scaffold_33 (20700642-20700753) | |
| 592-705, gnl|oryCun1|scaffold_182579 (6768-6633) | |
| 592-705, gnl|panTro1|chr19 (4767989-4768145) | |
| 592-705, gnl|rheMac2|chr16 (4388180-4388336) | |
| 592-705, gnl|rn3|chr10 (59291330-59291192) | |
| 592-705, gnl|tetNig1|chr16 (6841410-6841533) | |
| 592-705, gnl|xenTro1|scaffold_138 (1587512-1587372) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| tes (0.207814) | |
| nep (0.183925) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| eep (0.122564) | |
| ldo (0.0970026) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| nep (0.183925) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| eep (0.122564) | |
| ldo (0.0970026) |