Non-Coding RNA Search

Ss1.1-Pig4-TMW8068F14.3

Sequence:


               
               CCTTAACACACTTCACCAGGTCAGGGATCGAACCCATGCAGCCATAGAGACAACTGCCAA
ATCCTTAACTCCAAAATGACTCCAAAATGCCCTTATATTTAATACCCTTCTAATCAGTCA
CCCAGACCAGCCATACAAATTTAGTTTGAGAGCTGCAGAATTTATAGAGAAGACTAGAGT
TAATACTTACTTTTATGTTTTATCATGATGAATCAGAACTATTTATTTAATAGTAAAATC
TCCTGGCTTCCCTTAATCCCTTTATTTCAAATTATTTAAGTAGTGGGTTTTTTTGTTTTT
TTTTTTTCAATGGGGGAACATTTGATGTTTTCTCAATGGAAGTATTTTTTTATTTAATTT
GCAATTTGATAGCATTTCATGGCAAATACCAAATAAGCCGGGCAGATATTTTGCATTTTT
GATGGTTTCGTATTCTAGTAGCTACATGTCTCCTGCATTCTCATATATCACACGGCACAA
GATGGCCGGAGAGGCAGCAGCACTGCGAGCTGTCAGGCGTTCCTCCGCGGCCGCGGTGCC
CGCCGGTCGGCGGGGAGCTGCGCCCGGGAGGCCCGCAGGCTCGCGGGAACCCAGCGGCTG
CGGATGGGGCGAGGCGGGCCGCGGGTCGGGCTGGGAGCCCCCGGCAGAGACGCCCGGGGC
AGCCGGGCCCACGACGGGGAAAGCGCCGCTGCGGCAGCGGCTGCGGAGGCTCCTCGGGGC
CCCGGCGGCTCGACCTGGTACGGGCGGGAGGCTCGGGCAGGCGGCCCGGCGCGGGACTCG
GGCGTGAGTGACCAAGGGGTGCTGACCGCGGCGCTCGGACCCGGCAACTTACAAGATTAA
AATTAAATTTGGTTGATGATGGTTCTGGACAAATACAGCTCTTTTATTTGAGGTATGCCA
TTTTGAAGACAGACCCGTGGAATTTTATCCTTGAGGATAGGGGAAATCTTTGTGAAAGTC
TGTATTTTATAAAGCAACAATATGAATCCTGAGGCTGAATTGTCTAAGGGGCCTGTACAG
CGAAATAGATCACCCAGTCAGCTTGAAGAGTCTCAAATGGACCCTACAACTGAGAAATCA
AGATGGCAGTCCACTATGGGAAATGAGAAAAATGGACTAATGCAAGAGTGCTGTGATAAT
AACAACCAAGACAGGGTTCTTTTAACATGGATTTCATGAATGAAGATATAGGTTTCTTAA
CCAACACAATGGACAGTGGATTTGACTTTGGAAAGACTTTTTGTATCATAAAAACAAGAA
CATTTTTGACATTTGGAGAAGAAAGATGACACATTAACAGATGATAGTTTGTATGTCTGG
AATTTTTTGGTTTGATTTGTATGAGAATGACCTTGTGGAATGTTAACTTTAATAAAATTT
CTAACAGTTTAAAAAAAAAAAAAAAAAAAAAAAAAACTAATGGCCACAAACCCTAACATA
TTTAGTTATTTAGTATTTTAACCTGTAAGGAAATCTTGCCTATCCTTTCCCTAGATTCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTAACACACTTCACCAGGTCAGGGATCGAACCCATGCAGCCATAGAGACAACTGCCAA
ATCCTTAACTCCAAAATGACTCCAAAATGCCCTTATATTTAATACCCTTCTAATCAGTCA
CCCAGACCAGCCATACAAATTTAGTTTGAGAGCTGCAGAATTTATAGAGAAGACTAGAGT
TAATACTTACTTTTATGTTTTATCATGATGAATCAGAACTATTTATTTAATAGTAAAATC
TCCTGGCTTCCCTTAATCCCTTTATTTCAAATTATTTAAGTAGTGGGTTTTTTTGTTTTT
TTTTTTTCAATGGGGGAACATTTGATGTTTTCTCAATGGAAGTATTTTTTTATTTAATTT
GCAATTTGATAGCATTTCATGGCAAATACCAAATAAGCCGGGCAGATATTTTGCATTTTT
GATGGTTTCGTATTCTAGTAGCTACATGTCTCCTGCATTCTCATATATCACACGGCACAA
GATGGCCGGAGAGGCAGCAGCACTGCGAGCTGTCAGGCGTTCCTCCGCGGCCGCGGTGCC
CGCCGGTCGGCGGGGAGCTGCGCCCGGGAGGCCCGCAGGCTCGCGGGAACCCAGCGGCTG
CGGATGGGGCGAGGCGGGCCGCGGGTCGGGCTGGGAGCCCCCGGCAGAGACGCCCGGGGC
AGCCGGGCCCACGACGGGGAAAGCGCCGCTGCGGCAGCGGCTGCGGAGGCTCCTCGGGGC
CCCGGCGGCTCGACCTGGTACGGGCGGGAGGCTCGGGCAGGCGGCCCGGCGCGGGACTCG
GGCGTGAGTGACCAAGGGGTGCTGACCGCGGCGCTCGGACCCGGCAACTTACAAGATTAA
AATTAAATTTGGTTGATGATGGTTCTGGACAAATACAGCTCTTTTATTTGAGGTATGCCA
TTTTGAAGACAGACCCGTGGAATTTTATCCTTGAGGATAGGGGAAATCTTTGTGAAAGTC
TGTATTTTATAAAGCAACAATATGAATCCTGAGGCTGAATTGTCTAAGGGGCCTGTACAG
CGAAATAGATCACCCAGTCAGCTTGAAGAGTCTCAAATGGACCCTACAACTGAGAAATCA
AGATGGCAGTCCACTATGGGAAATGAGAAAAATGGACTAATGCAAGAGTGCTGTGATAAT
AACAACCAAGACAGGGTTCTTTTAACATGGATTTCATGAATGAAGATATAGGTTTCTTAA
CCAACACAATGGACAGTGGATTTGACTTTGGAAAGACTTTTTGTATCATAAAAACAAGAA
CATTTTTGACATTTGGAGAAGAAAGATGACACATTAACAGATGATAGTTTGTATGTCTGG
AATTTTTTGGTTTGATTTGTATGAGAATGACCTTGTGGAATGTTAACTTTAATAAAATTT
CTAACAGTTTAAAAAAAAAAAAAAAAAAAAAAAAAACTAATGGCCACAAACCCTAACATA
TTTAGTTATTTAGTATTTTAACCTGTAAGGAAATCTTGCCTATCCTTTCCCTAGATTCAT

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

Help | Less info


               
               65-468, gnl|bosTau2|chr21 (8018450-8018828)
               

               
               65-468, gnl|Hg17|chr15 (91240979-91241400)
               

               
               65-468, gnl|Mm7|chr7 (69398340-69397615)
               


               
               826-976, gnl|bosTau2|chr6 (6677789-6677640)
               

               
               826-976, gnl|Hg17|chr4 (108917254-108917117)
               


               
               1031-1394, gnl|bosTau2|chr21 (8019405-8019770)
               

               
               1031-1394, gnl|Hg17|chr15 (91241958-91242323)
               

               
               1031-1394, gnl|Mm7|chr7 (69397137-69396791)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               65-468, gnl|bosTau2|chr21 (8018450-8018828)
               

               
               65-468, gnl|Hg17|chr15 (91240979-91241400)
               

               
               65-468, gnl|Mm7|chr7 (69398340-69397615)
               


               
               826-976, gnl|bosTau2|chr6 (6677789-6677640)
               

               
               826-976, gnl|Hg17|chr4 (108917254-108917117)
               


               
               1031-1394, gnl|bosTau2|chr21 (8019405-8019770)
               

               
               1031-1394, gnl|Hg17|chr15 (91241958-91242323)
               

               
               1031-1394, gnl|Mm7|chr7 (69397137-69396791)

Expressed library(ies): 47 entry(ies)

More info

Expressed library(ies): 47 entry(ies)

Help | Less info


               
               gul (1.06553)
               

               
               aor (0.781097)
               

               
               spl (0.715922)
               

               
               rec (0.692281)
               

               
               sin (0.524843)
               

               
               pro (0.512033)
               

               
               thg (0.507164)
               

               
               tra (0.492368)
               

               
               cbe (0.478469)
               

               
               fco (0.471624)
               

               
               bfe (0.449573)
               

               
               lin (0.436808)
               

               
               nms (0.427716)
               

               
               tes (0.415628)
               

               
               pla (0.401016)
               

               
               ret (0.3862)
               

               
               sug (0.381874)
               

               
               sag (0.36543)
               

               
               mgm (0.360685)
               

               
               spc (0.340097)
               

               
               nco (0.323468)
               

               
               mga (0.32041)
               

               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               cst (0.280073)
               

               
               fce (0.271592)
               

               
               lyg (0.266205)
               

               
               kid (0.259471)
               

               
               pgl (0.236967)
               

               
               pan (0.23596)
               

               
               mgp (0.230681)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 47 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (1.06553)
               

               
               aor (0.781097)
               

               
               spl (0.715922)
               

               
               rec (0.692281)
               

               
               sin (0.524843)
               

               
               pro (0.512033)
               

               
               thg (0.507164)
               

               
               tra (0.492368)
               

               
               cbe (0.478469)
               

               
               fco (0.471624)
               

               
               bfe (0.449573)
               

               
               lin (0.436808)
               

               
               nms (0.427716)
               

               
               tes (0.415628)
               

               
               pla (0.401016)
               

               
               ret (0.3862)
               

               
               sug (0.381874)
               

               
               sag (0.36543)
               

               
               mgm (0.360685)
               

               
               spc (0.340097)
               

               
               nco (0.323468)
               

               
               mga (0.32041)
               

               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               cst (0.280073)
               

               
               fce (0.271592)
               

               
               lyg (0.266205)
               

               
               kid (0.259471)
               

               
               pgl (0.236967)
               

               
               pan (0.23596)
               

               
               mgp (0.230681)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	65-468, gnl\|bosTau2\|chr21 (8018450-8018828)
	65-468, gnl\|Hg17\|chr15 (91240979-91241400)
	65-468, gnl\|Mm7\|chr7 (69398340-69397615)

	826-976, gnl\|bosTau2\|chr6 (6677789-6677640)
	826-976, gnl\|Hg17\|chr4 (108917254-108917117)

	1031-1394, gnl\|bosTau2\|chr21 (8019405-8019770)
	1031-1394, gnl\|Hg17\|chr15 (91241958-91242323)
	1031-1394, gnl\|Mm7\|chr7 (69397137-69396791)

	gul (1.06553)
	aor (0.781097)
	spl (0.715922)
	rec (0.692281)
	sin (0.524843)
	pro (0.512033)
	thg (0.507164)
	tra (0.492368)
	cbe (0.478469)
	fco (0.471624)
	bfe (0.449573)
	lin (0.436808)
	nms (0.427716)
	tes (0.415628)
	pla (0.401016)
	ret (0.3862)
	sug (0.381874)
	sag (0.36543)
	mgm (0.360685)
	spc (0.340097)
	nco (0.323468)
	mga (0.32041)
	sme (0.305437)
	cte (0.29274)
	liv (0.292569)
	cst (0.280073)
	fce (0.271592)
	lyg (0.266205)
	kid (0.259471)
	pgl (0.236967)
	pan (0.23596)
	mgp (0.230681)
	fty (0.17584)
	fbs (0.175346)
	fat (0.147427)
	ski (0.146735)
	csk (0.140746)
	nca (0.136874)
	ste (0.135208)
	nmm (0.132802)
	ute (0.132784)
	ova (0.129132)
	bla (0.124347)
	eru (0.120048)
	med (0.116252)
	nbm (0.0993246)
	eje (0.0988338)