Non-Coding RNA Search

Ss1.1-Pig4-TMW8068F18.3

Sequence:


               
               TGCCCTCACCCCCACAACCTCTTACTAGCAAACCTGTGTCTGCAGTAAAACCCACTGCTG
CCCCTCCAGTAGCTGAGCCCGGAGCTGTCAAGGGTCTGCGCTCAGAACATCGGGAGAAAA
TGAACAGGATGCGGCAGCGCATCGCTCAGCGTCTGAAGGAGGCCCAGAACACCTGCGCGA
TGCTCACCACTTTCAATGAGATTGACATGAGTAACATCCAGGACATGAGGGCTCGGCACA
AAGAAGCTTTTCTGAAGAAACATAACCTCAAACTAGGCTTCATGTCGGCATTTGTGAAGG
CCTCAGCCTTCGCCTTGCAGGAGCAGCCTGTTGTAAATGCAGTGATTGATGATACAACCA
AAGAGGTGGTGTATAGGGATTATATTGACATCAGCGTCGCAGTGGCCACCCCTCGGGGTC
TGGTGGTTCCCGTCATCAGGAATGTGGAAACTATGAATTACGCCGATATTGAGCGAACCA
TCAGTGAACTGGGAGAGAAGGCCAGAAAGAATGAACTTGCTATTGAAGATATGGATGGTG
GCACTTTCACCATCAGCAATGGAGGCGTTTTCGGCTCCCTCTTTGGAACGCCCATCATCA
ACCCCCCGCAGTCTGCCATCCTGGGCATGCACGCCATCGTTGATAGGCCAGTGGCCGTGG
GAGGCAAGGTGGAGATACGGCCCATGATGTACGTGGCCCTGACGTATGATCACCGGCTGA
TCGACGGTAGAGAGGCCGTAACTTTCCTCCGCAAAATCAAGGCAGCGGTAGAGGATCCCA
GAGTCCTCCTACTGGACCTTTAGGAGGAAGCCATGCGCCCTACATGTCAACCACGCAGGA
ACTGAAAACCAGTCTTCTCCCTGTCCCCTCATGGCCCCAGGTTAGCCTGATGACAGACAG
GCATATGCTGTTGGCCTCAAGCAAGGAAACCAGGGCACTATGTAACCAGCAGTCACAGGC
CTCTTCTTGGTGTCTCCTGCCGGGCTCTCTCCCTCTCTGCACCCTTCTCTTACGCTCGAA
TATCTTATTTCCTTAGGCTCGAGGGAGAGAGAGAGCCTTAACAGATGCCGTTAATATTTC
CGCCTTTCCTTCATTAGCCCTCCGCAAAGATGATTTTGTTTCTCCCCGGCGCCAGTATAC
TGGAGAGAAACTGCCAGGGAGGGACCATGTGACTAAGTTTCTGTCTTTTGAAAGTCTGTT
CTCGAGACTCCCAGGAGGGAGCTGTGTCTCCCAGGCTCAGGGCAGCCTCTGTCCTGGCTG
TGCACGTCCTCCCTCGGTTCCCCCTGGGTGGAGGTATTGACCACAGGCAAGAGGTGCTGC
TTTGCTTCCTAAGTGGCACCGCGTTCTCAACTGGCATTGACTTCAGGCTGCCTCTACTAC
CTCTTCCGGGAAGCACAGCCCAGGGGACCTGGTGGGGGGAGGGACGGGTAGGCAGTGTTG
AGAGGGGAAGAGGGCAGATTCTGAGGTCCTATTTTGTAAATGAGACAGGAGCAGAATGGA
GGCTTGCCCTCACATCCTGACTTTGCACCAGGAAAGACCCATTTTGGCACAGACACACAC
GGCTGTGGCTGCACCACCCTTTCTAGGCTGCTAGCTAGGAACCATCCTACCACATTGTTC
TCATTTAGAGCAGATTCTAGCACATCTTGGCAGTGAGACAAAACATGTCACCACCAAAGG
CTGGATGGTGCCTGGTAGAGATTGGAGTGAAGGAGGCTTCCTGTGAACTGGCTCAGATTG
ACTTGAGCTTTTAAATTCCATTGGTGTAGCCCGTGGGCTAAAGAGGCAATTCTGTTTTTG
CATCGTAGCCCTTGGGTAGTGGGGCCTCAGCCCTTCCTCTCCAGAACATAGGTCTGGGGA
AGGATGGATGGTGGTGGAAACCAGCTCCCAAGATGCTAGTACACAGTGGGGAAATGACCA
GTGTCACCTCGGAGGTCTGGGCACAGTCATTGGAATTCCTCGGAGCATGGGTAAATGCAC
ACACCTTGTGGAAGTTCCTGGGTTTTGTGGCTTTGTATGCACTTGCATCCAGGCCTGAGG
CTGCCAGCCTTGACACTGGGAGCCATTTATTCAGTGTAGTGTCTGTTTGTATCTCCAGCA
AAGATGCAAGACCTGGGGGTTGGGGTGGGGGGAATGGATGGGAGCCAGTACTGAGTGCCT
GCAGCATCTACTATGTCTTCACTATTCAGAACTTGTAACTAAAATATTTAAAGAAACTGA
TTTTAAATGCAAATTAAAGGGCAAATGTTCGCAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCCTCACCCCCACAACCTCTTACTAGCAAACCTGTGTCTGCAGTAAAACCCACTGCTG
CCCCTCCAGTAGCTGAGCCCGGAGCTGTCAAGGGTCTGCGCTCAGAACATCGGGAGAAAA
TGAACAGGATGCGGCAGCGCATCGCTCAGCGTCTGAAGGAGGCCCAGAACACCTGCGCGA
TGCTCACCACTTTCAATGAGATTGACATGAGTAACATCCAGGACATGAGGGCTCGGCACA
AAGAAGCTTTTCTGAAGAAACATAACCTCAAACTAGGCTTCATGTCGGCATTTGTGAAGG
CCTCAGCCTTCGCCTTGCAGGAGCAGCCTGTTGTAAATGCAGTGATTGATGATACAACCA
AAGAGGTGGTGTATAGGGATTATATTGACATCAGCGTCGCAGTGGCCACCCCTCGGGGTC
TGGTGGTTCCCGTCATCAGGAATGTGGAAACTATGAATTACGCCGATATTGAGCGAACCA
TCAGTGAACTGGGAGAGAAGGCCAGAAAGAATGAACTTGCTATTGAAGATATGGATGGTG
GCACTTTCACCATCAGCAATGGAGGCGTTTTCGGCTCCCTCTTTGGAACGCCCATCATCA
ACCCCCCGCAGTCTGCCATCCTGGGCATGCACGCCATCGTTGATAGGCCAGTGGCCGTGG
GAGGCAAGGTGGAGATACGGCCCATGATGTACGTGGCCCTGACGTATGATCACCGGCTGA
TCGACGGTAGAGAGGCCGTAACTTTCCTCCGCAAAATCAAGGCAGCGGTAGAGGATCCCA
GAGTCCTCCTACTGGACCTTTAGGAGGAAGCCATGCGCCCTACATGTCAACCACGCAGGA
ACTGAAAACCAGTCTTCTCCCTGTCCCCTCATGGCCCCAGGTTAGCCTGATGACAGACAG
GCATATGCTGTTGGCCTCAAGCAAGGAAACCAGGGCACTATGTAACCAGCAGTCACAGGC
CTCTTCTTGGTGTCTCCTGCCGGGCTCTCTCCCTCTCTGCACCCTTCTCTTACGCTCGAA
TATCTTATTTCCTTAGGCTCGAGGGAGAGAGAGAGCCTTAACAGATGCCGTTAATATTTC
CGCCTTTCCTTCATTAGCCCTCCGCAAAGATGATTTTGTTTCTCCCCGGCGCCAGTATAC
TGGAGAGAAACTGCCAGGGAGGGACCATGTGACTAAGTTTCTGTCTTTTGAAAGTCTGTT
CTCGAGACTCCCAGGAGGGAGCTGTGTCTCCCAGGCTCAGGGCAGCCTCTGTCCTGGCTG
TGCACGTCCTCCCTCGGTTCCCCCTGGGTGGAGGTATTGACCACAGGCAAGAGGTGCTGC
TTTGCTTCCTAAGTGGCACCGCGTTCTCAACTGGCATTGACTTCAGGCTGCCTCTACTAC
CTCTTCCGGGAAGCACAGCCCAGGGGACCTGGTGGGGGGAGGGACGGGTAGGCAGTGTTG
AGAGGGGAAGAGGGCAGATTCTGAGGTCCTATTTTGTAAATGAGACAGGAGCAGAATGGA
GGCTTGCCCTCACATCCTGACTTTGCACCAGGAAAGACCCATTTTGGCACAGACACACAC
GGCTGTGGCTGCACCACCCTTTCTAGGCTGCTAGCTAGGAACCATCCTACCACATTGTTC
TCATTTAGAGCAGATTCTAGCACATCTTGGCAGTGAGACAAAACATGTCACCACCAAAGG
CTGGATGGTGCCTGGTAGAGATTGGAGTGAAGGAGGCTTCCTGTGAACTGGCTCAGATTG
ACTTGAGCTTTTAAATTCCATTGGTGTAGCCCGTGGGCTAAAGAGGCAATTCTGTTTTTG
CATCGTAGCCCTTGGGTAGTGGGGCCTCAGCCCTTCCTCTCCAGAACATAGGTCTGGGGA
AGGATGGATGGTGGTGGAAACCAGCTCCCAAGATGCTAGTACACAGTGGGGAAATGACCA
GTGTCACCTCGGAGGTCTGGGCACAGTCATTGGAATTCCTCGGAGCATGGGTAAATGCAC
ACACCTTGTGGAAGTTCCTGGGTTTTGTGGCTTTGTATGCACTTGCATCCAGGCCTGAGG
CTGCCAGCCTTGACACTGGGAGCCATTTATTCAGTGTAGTGTCTGTTTGTATCTCCAGCA
AAGATGCAAGACCTGGGGGTTGGGGTGGGGGGAATGGATGGGAGCCAGTACTGAGTGCCT
GCAGCATCTACTATGTCTTCACTATTCAGAACTTGTAACTAAAATATTTAAAGAAACTGA
TTTTAAATGCAAATTAAAGGGCAAATGTTCGCAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|23271834|gb|AAH24066.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|23271834|gb|AAH24066.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2078-2258, gnl|bosTau2|chr7 (8812285-8812105)
               

               
               2078-2258, gnl|Hg17|chr1 (75919908-75919726)
               

               
               2078-2258, gnl|Mm7|chr12 (83133761-83133918)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2078-2258, gnl|bosTau2|chr7 (8812285-8812105)
               

               
               2078-2258, gnl|Hg17|chr1 (75919908-75919726)
               

               
               2078-2258, gnl|Mm7|chr12 (83133761-83133918)

Expressed library(ies): 23 entry(ies)

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Expressed library(ies): 23 entry(ies)

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               ill (0.526778)
               

               
               cje (0.495704)
               

               
               duo (0.345602)
               

               
               cst (0.280073)
               

               
               nca (0.273748)
               

               
               pgl (0.236967)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.526778)
               

               
               cje (0.495704)
               

               
               duo (0.345602)
               

               
               cst (0.280073)
               

               
               nca (0.273748)
               

               
               pgl (0.236967)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	2078-2258, gnl\|bosTau2\|chr7 (8812285-8812105)
	2078-2258, gnl\|Hg17\|chr1 (75919908-75919726)
	2078-2258, gnl\|Mm7\|chr12 (83133761-83133918)

	ill (0.526778)
	cje (0.495704)
	duo (0.345602)
	cst (0.280073)
	nca (0.273748)
	pgl (0.236967)
	ece (0.229305)
	mas (0.210305)
	hea (0.204499)
	fcc (0.197785)
	nep (0.183925)
	fty (0.17584)
	nje (0.16592)
	cki (0.165235)
	ssp (0.13552)
	ute (0.132784)
	cov (0.132153)
	bla (0.124347)
	cly (0.120642)
	ecc (0.115035)
	jca (0.11396)
	jej (0.0989218)
	ldo (0.0970026)