Non-Coding RNA Search

Ss1.1-Pig4-TMW8068G01.3

Sequence:


               
               GGTGACCCTGCCGACCTTGCCTTCCTTCGCAGGGCCTTCCCCCGCCTGCATGCCTGGTTC
TCCTGGCTTCATCAGAGCCAGGCAGGGCCGGTACCACTCTCTTACCGCTGGCGGGGCCGG
GACCCAGCCTTGCCAACCTTACTGAACCCCAAGACGCTGCCTTCAGGGCTGGATGACTAT
CCCCGGGCTTCACACCCTTCAGCTACTGAGCGGCACCTGGACCTGCGATGCTGGGTGGCA
CTGGGTGCCCGTGTGTTGATGCGGCTGGCAGAGCAGCTGGGAGAGGCTGAGGCAGCTGCA
GAGCTGGGCCCATTGGCTGTCTCACTGGAAGCTGAGGAGAGCCTGGATGAGCTGCACTGG
GCTCCAGAGCTAGGAGTCTTTGCAGACTTTGGGAACCACACAAAAGCAGTGCAGCTGAAG
CCTCGGCCTCCCCAGGGGATGGTGCGAGTGGTGGGCCGGCCCCACCCTCACTTACAATAT
GTGGATGCCTTGGGCTATGTCAGCCTTTTTCCCTTTCTGCTGCGGCTGCTGGACCCCAAC
TCATCCCGCCTTGGGCCCCTGCTGGATGTTCTAGCTGACAGCCGTCATCTCTGGAGCCCC
TTTGGTTTGCGCTCCCTCGCAGCATCCAGCCCCTTTTACAGCCAGCGCAATTCAGAGCAT
GACCCTCCCTACTGGCGGGGTGCTGTGTGGCTCAATATCAACTACCTGGCCTTGGGGGCC
CTTCACCACTATGGGCATCTGGAGGGCCCCTACCAGGCCCGTGCAGCCAAGCTCCATAGA
GAGCTGCGTGCCAATCTGGTGGGCAACGTGTGGCGGCAATACCAGGCCACGGGGTTCCTG
TGGGAGCAGTACAGTGACCGGGATGGGCGGGGCATGGGCTGCCGCCCCTTCCAGGGCTGG
ACCAGCCTTGTCCTACTGGTCATGGCTGAAGACTACTGAAGTGGGAGGATGGGAGGGGAG
CCAGACCCCTTGTTCCTCTCTGGACTAGAGGGACACGGTCTCTTGCTTCTGCCCCCAGCC
CTCAGATACCAATGCTTCAAACCCTCCTCAGCTCATCTCAGGGGTCTCCTTACTGTCATC
CCACATAGCCCTGGGGTGAATGTGAACTTAAGAGTCTATTTTTCTAAATAAATTGGAAAA
CCATACTCAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGACCCTGCCGACCTTGCCTTCCTTCGCAGGGCCTTCCCCCGCCTGCATGCCTGGTTC
TCCTGGCTTCATCAGAGCCAGGCAGGGCCGGTACCACTCTCTTACCGCTGGCGGGGCCGG
GACCCAGCCTTGCCAACCTTACTGAACCCCAAGACGCTGCCTTCAGGGCTGGATGACTAT
CCCCGGGCTTCACACCCTTCAGCTACTGAGCGGCACCTGGACCTGCGATGCTGGGTGGCA
CTGGGTGCCCGTGTGTTGATGCGGCTGGCAGAGCAGCTGGGAGAGGCTGAGGCAGCTGCA
GAGCTGGGCCCATTGGCTGTCTCACTGGAAGCTGAGGAGAGCCTGGATGAGCTGCACTGG
GCTCCAGAGCTAGGAGTCTTTGCAGACTTTGGGAACCACACAAAAGCAGTGCAGCTGAAG
CCTCGGCCTCCCCAGGGGATGGTGCGAGTGGTGGGCCGGCCCCACCCTCACTTACAATAT
GTGGATGCCTTGGGCTATGTCAGCCTTTTTCCCTTTCTGCTGCGGCTGCTGGACCCCAAC
TCATCCCGCCTTGGGCCCCTGCTGGATGTTCTAGCTGACAGCCGTCATCTCTGGAGCCCC
TTTGGTTTGCGCTCCCTCGCAGCATCCAGCCCCTTTTACAGCCAGCGCAATTCAGAGCAT
GACCCTCCCTACTGGCGGGGTGCTGTGTGGCTCAATATCAACTACCTGGCCTTGGGGGCC
CTTCACCACTATGGGCATCTGGAGGGCCCCTACCAGGCCCGTGCAGCCAAGCTCCATAGA
GAGCTGCGTGCCAATCTGGTGGGCAACGTGTGGCGGCAATACCAGGCCACGGGGTTCCTG
TGGGAGCAGTACAGTGACCGGGATGGGCGGGGCATGGGCTGCCGCCCCTTCCAGGGCTGG
ACCAGCCTTGTCCTACTGGTCATGGCTGAAGACTACTGAAGTGGGAGGATGGGAGGGGAG
CCAGACCCCTTGTTCCTCTCTGGACTAGAGGGACACGGTCTCTTGCTTCTGCCCCCAGCC
CTCAGATACCAATGCTTCAAACCCTCCTCAGCTCATCTCAGGGGTCTCCTTACTGTCATC
CCACATAGCCCTGGGGTGAATGTGAACTTAAGAGTCTATTTTTCTAAATAAATTGGAAAA
CCATACTCAACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61883583|ref|XP_594296.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61883583|ref|XP_594296.1|

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               1-159, - strand, RNAz p=0.939276
               

               
               200-439, - strand, RNAz p=0.760338
               

               
               520-639, - strand, RNAz p=0.662932
               

               
               840-959, + strand, RNAz p=0.727845

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-159, - strand, RNAz p=0.939276
               

               
               200-439, - strand, RNAz p=0.760338
               

               
               520-639, - strand, RNAz p=0.662932
               

               
               840-959, + strand, RNAz p=0.727845

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1144, gnl|bosTau2|chr11 (7816898-7818040)
               

               
               1-1144, gnl|Hg17|chr2 (74600995-74599850)
               

               
               1-1144, gnl|Mm7|chr6 (83143204-83144330)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1144, gnl|bosTau2|chr11 (7816898-7818040)
               

               
               1-1144, gnl|Hg17|chr2 (74600995-74599850)
               

               
               1-1144, gnl|Mm7|chr6 (83143204-83144330)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               amn (0.417711)
               

               
               fce (0.271592)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               cov (0.132153)
               

               
               cly (0.120642)

Expressed library(ies): 9 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               fce (0.271592)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               cov (0.132153)
               

               
               cly (0.120642)

	1-159, - strand, RNAz p=0.939276
	200-439, - strand, RNAz p=0.760338
	520-639, - strand, RNAz p=0.662932
	840-959, + strand, RNAz p=0.727845

	1-1144, gnl\|bosTau2\|chr11 (7816898-7818040)
	1-1144, gnl\|Hg17\|chr2 (74600995-74599850)
	1-1144, gnl\|Mm7\|chr6 (83143204-83144330)

	amn (0.417711)
	fce (0.271592)
	col (0.195008)
	nep (0.183925)
	ill (0.175593)
	ton (0.1755)
	fbs (0.175346)
	cov (0.132153)
	cly (0.120642)