Non-Coding RNA Search

Ss1.1-Pig4-TMW8068G09.3

Sequence:


               
               AAAAAAAAAAAAAAAAAAAAAAGGATTTTATGACCAAGGACTTCCTCCTCAGCCCCTTTT
CCCAGCTTTGCCAGTAACTTCTTAAGAGTGAAAATTCTGGCTGAACCAACTGAAAAACAC
ACTTCCAGTGGAGCTGATGTTTTGGGTGGTACATTAAGTTCATATGTTTTTTTAATTCAG
TGAATTTTATTATTTATAGCTGTACAACCATCATCACAACCTAAGTTCATATTTTAAATT
TTAAAAATCCATTTGACATTTAAAAAAAAATGAAATTAGAAAATGTGGCAAGGTGGATTT
TGGGGTGGCCATATATAACATAGGGATGGAAAGCTGTAATCATTAGTTTTAATACAGCCT
GCCTGCTCTGCAGGAATATAGCAGTGTATATTTTCAGTCGTAGCAGACCTCCTGTGCTGG
TCACAACTTCTCGCAGTAATTATGACCGAGACATTCTTTGGTAACTGCCATTTTGCTGCT
AGTTCATTTTATGGCTAGAAAGTCAGTTAAAAGTAAATGTGCCAAATTCACTTTTGTCAG
AATGCAAGAGCAGATGGCCAAGTTCTCTCCTCACCAGAGTGGATCAACAGCAGCAGGGAA
AGTGGGGGAGGGAGTGGAAGGAGAATTTTAGAGACTTTGAAACTGCAGTAAAATTAAATG
AGTCAGGGAGCCTCAGTTAGAAAATAAAGTTAGGGCAGTTTTTGTGAAGAGAGTTAATAT
TTGTTTAGAGCCAGAAAGCACTAGTCTTTGAGGAGACGCACATTCATTTTGCAGGTTTTT
TTCAATTAAAAATAATTCCAAAGATATACCAGCTCACCAACGATAAAGTATCGGCCTTGT
CCCAGACGCCCTCACCTCCTGCCCGAAATAAATCTGATGCCCTGAAAAGGCCTACTTACA
CCACATGCTGTTTCTCCTGAGTATACCCCCTGGGTATATGTATGGTCATTCTCTGATTAG
TTTTAAGATGTAGAAAAGTTAATATTCTTCTCTAACCTATAAGATTAGGGCTCTTTGCCT
GTAATGACAACTGGGATTTCTATAGAACTTAGCAATTTTCACAGCACTTTTTCACTTGCA
TTATATCATTTGAACCTCACAACATTCTCGTGAGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAAAAAAAAAAAAAAAGGATTTTATGACCAAGGACTTCCTCCTCAGCCCCTTTT
CCCAGCTTTGCCAGTAACTTCTTAAGAGTGAAAATTCTGGCTGAACCAACTGAAAAACAC
ACTTCCAGTGGAGCTGATGTTTTGGGTGGTACATTAAGTTCATATGTTTTTTTAATTCAG
TGAATTTTATTATTTATAGCTGTACAACCATCATCACAACCTAAGTTCATATTTTAAATT
TTAAAAATCCATTTGACATTTAAAAAAAAATGAAATTAGAAAATGTGGCAAGGTGGATTT
TGGGGTGGCCATATATAACATAGGGATGGAAAGCTGTAATCATTAGTTTTAATACAGCCT
GCCTGCTCTGCAGGAATATAGCAGTGTATATTTTCAGTCGTAGCAGACCTCCTGTGCTGG
TCACAACTTCTCGCAGTAATTATGACCGAGACATTCTTTGGTAACTGCCATTTTGCTGCT
AGTTCATTTTATGGCTAGAAAGTCAGTTAAAAGTAAATGTGCCAAATTCACTTTTGTCAG
AATGCAAGAGCAGATGGCCAAGTTCTCTCCTCACCAGAGTGGATCAACAGCAGCAGGGAA
AGTGGGGGAGGGAGTGGAAGGAGAATTTTAGAGACTTTGAAACTGCAGTAAAATTAAATG
AGTCAGGGAGCCTCAGTTAGAAAATAAAGTTAGGGCAGTTTTTGTGAAGAGAGTTAATAT
TTGTTTAGAGCCAGAAAGCACTAGTCTTTGAGGAGACGCACATTCATTTTGCAGGTTTTT
TTCAATTAAAAATAATTCCAAAGATATACCAGCTCACCAACGATAAAGTATCGGCCTTGT
CCCAGACGCCCTCACCTCCTGCCCGAAATAAATCTGATGCCCTGAAAAGGCCTACTTACA
CCACATGCTGTTTCTCCTGAGTATACCCCCTGGGTATATGTATGGTCATTCTCTGATTAG
TTTTAAGATGTAGAAAAGTTAATATTCTTCTCTAACCTATAAGATTAGGGCTCTTTGCCT
GTAATGACAACTGGGATTTCTATAGAACTTAGCAATTTTCACAGCACTTTTTCACTTGCA
TTATATCATTTGAACCTCACAACATTCTCGTGAGAT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               78-176, - strand, RNAz p=0.576726
               

               
               294-488, + strand, RNAz p=0.873328

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               78-176, - strand, RNAz p=0.576726
               

               
               294-488, + strand, RNAz p=0.873328

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_002959, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_002959, +

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               10-176, gnl|bosTau2|chr3 (30473986-30474157)
               

               
               10-176, gnl|canFam2|chr6 (45577399-45576277)
               

               
               10-176, gnl|dasNov1|scaffold_2090 (14279-15365)
               

               
               10-176, gnl|echTel1|scaffold_289808 (30002-30974)
               

               
               10-176, gnl|hg17|chr1 (109567063-109568195)
               

               
               10-176, gnl|Hg17|chr1 (109567627-109567466)
               

               
               10-176, gnl|loxAfr1|scaffold_1838 (135947-137041)
               

               
               10-176, gnl|mm7|chr3 (108177122-108176059)
               

               
               10-176, gnl|Mm7|chr3 (108176575-108176731)
               

               
               10-176, gnl|monDom2|scaffold_0 (7330637-7329534)
               

               
               10-176, gnl|oryCun1|scaffold_206851 (75155-73984)
               

               
               10-176, gnl|panTro1|chr1 (108492013-108493148)
               

               
               10-176, gnl|rheMac2|chr1 (112367874-112368997)
               

               
               10-176, gnl|rn3|chr2 (203891730-203890650)
               


               
               222-1116, gnl|bosTau2|chr3 (30474135-30475023)
               

               
               222-1116, gnl|Hg17|chr1 (109567488-109566588)
               

               
               222-1116, gnl|Mm7|chr3 (108176709-108177548)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-176, gnl|bosTau2|chr3 (30473986-30474157)
               

               
               10-176, gnl|canFam2|chr6 (45577399-45576277)
               

               
               10-176, gnl|dasNov1|scaffold_2090 (14279-15365)
               

               
               10-176, gnl|echTel1|scaffold_289808 (30002-30974)
               

               
               10-176, gnl|hg17|chr1 (109567063-109568195)
               

               
               10-176, gnl|Hg17|chr1 (109567627-109567466)
               

               
               10-176, gnl|loxAfr1|scaffold_1838 (135947-137041)
               

               
               10-176, gnl|mm7|chr3 (108177122-108176059)
               

               
               10-176, gnl|Mm7|chr3 (108176575-108176731)
               

               
               10-176, gnl|monDom2|scaffold_0 (7330637-7329534)
               

               
               10-176, gnl|oryCun1|scaffold_206851 (75155-73984)
               

               
               10-176, gnl|panTro1|chr1 (108492013-108493148)
               

               
               10-176, gnl|rheMac2|chr1 (112367874-112368997)
               

               
               10-176, gnl|rn3|chr2 (203891730-203890650)
               


               
               222-1116, gnl|bosTau2|chr3 (30474135-30475023)
               

               
               222-1116, gnl|Hg17|chr1 (109567488-109566588)
               

               
               222-1116, gnl|Mm7|chr3 (108176709-108177548)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               vin (0.332557)
               

               
               fce (0.271592)
               

               
               spc (0.226732)
               

               
               rec (0.17307)
               

               
               tbr (0.154178)
               

               
               ldo (0.0970026)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               fce (0.271592)
               

               
               spc (0.226732)
               

               
               rec (0.17307)
               

               
               tbr (0.154178)
               

               
               ldo (0.0970026)

	78-176, - strand, RNAz p=0.576726
	294-488, + strand, RNAz p=0.873328

	10-176, gnl\|bosTau2\|chr3 (30473986-30474157)
	10-176, gnl\|canFam2\|chr6 (45577399-45576277)
	10-176, gnl\|dasNov1\|scaffold_2090 (14279-15365)
	10-176, gnl\|echTel1\|scaffold_289808 (30002-30974)
	10-176, gnl\|hg17\|chr1 (109567063-109568195)
	10-176, gnl\|Hg17\|chr1 (109567627-109567466)
	10-176, gnl\|loxAfr1\|scaffold_1838 (135947-137041)
	10-176, gnl\|mm7\|chr3 (108177122-108176059)
	10-176, gnl\|Mm7\|chr3 (108176575-108176731)
	10-176, gnl\|monDom2\|scaffold_0 (7330637-7329534)
	10-176, gnl\|oryCun1\|scaffold_206851 (75155-73984)
	10-176, gnl\|panTro1\|chr1 (108492013-108493148)
	10-176, gnl\|rheMac2\|chr1 (112367874-112368997)
	10-176, gnl\|rn3\|chr2 (203891730-203890650)

	222-1116, gnl\|bosTau2\|chr3 (30474135-30475023)
	222-1116, gnl\|Hg17\|chr1 (109567488-109566588)
	222-1116, gnl\|Mm7\|chr3 (108176709-108177548)

	vin (0.332557)
	fce (0.271592)
	spc (0.226732)
	rec (0.17307)
	tbr (0.154178)
	ldo (0.0970026)