Non-Coding RNA Search

Ss1.1-Pig4-TMW8068G17.3

Sequence:


               
               CTTAACCCACTGAGCAAGGCCAGGGATCGAACCTGTGTCCTCAAGGATGCTAGTCAGATT
AGTTTCCACTGAGCCACGACCGGAACTCCCTAACATTCTTTACTGTTTGGTGAAGGTGAG
GTTTAGGTTCATTGTACCTGTTCAGCTCTCTAAATTATTGTCTCAAGTGTTGATGCTTCA
GATAACAACCACATTACTGGTAAATAAATGACTTTAGTAAGTGGGAGAATTGGGAGGTAA
ACAAAAGGTGAGCGATAGTAGCTACACCCATAATAAGGCTGTATCATCAGATAAATTTTT
TTGGATTGGAAAAATATCATAAATTAATCCCTATTCTAAAAAGAAAGAAAGAGAAAGGCT
GCAGTTTCACTGAGTTCTCTGACTTGTTCAGAGGTAGCAGCTTTTGACATTTATCACTTG
AAATTTAATAGTTCTTTGGATTAATGACTTTTTTAGAAGTAAGGTTGGTATTTACATGGT
ATCTACATGCTCCAGAATAGGTTAACAGTGATTATATAAATCATTTGATCCTGACACATC
TTGGCACTTTTTGTTTCTTGTATCGGGTGGATAATGTTAACATTATTCCTCAGAAATGTA
TGATCATGGGAGATAGTTTTTAGGCTAATTACAGGCGTCCTTATCACTACTCTTCACTTT
TTCCCTGGCAATGATAGATATTGTTAGGGAAAAATTTCTCTGTTGAGTTATACACCTGAG
AAGAAGAATTAACTTGGAAGGAAGTAACTAGAGATAGTAGTACCTGTGTAATATCAATGC
CAAATCTTCTACTTTAGAATGTTAATTTTTTTACTTTGGCTTTTGATGCCATCATGTGAT
TTTTAGTGTGCAGTTATGAAAGGTCATGCATTTCCTATTAGGGGAGAGGTATATTTTTTT
GCAGCTTAAATATTAACTGTGACTACAGTATGTACCAAATTTAAAAGCTATACACTGCCC
CTTTCAGTCTTTTCGTTTTGAACTTTACAATTGAAAGACTTTTTAGAAAAAAGGAATTCC
TGAGGTGTAATTTTTTTATGTATGAATAAAGTTGCATCTATATCTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTAACCCACTGAGCAAGGCCAGGGATCGAACCTGTGTCCTCAAGGATGCTAGTCAGATT
AGTTTCCACTGAGCCACGACCGGAACTCCCTAACATTCTTTACTGTTTGGTGAAGGTGAG
GTTTAGGTTCATTGTACCTGTTCAGCTCTCTAAATTATTGTCTCAAGTGTTGATGCTTCA
GATAACAACCACATTACTGGTAAATAAATGACTTTAGTAAGTGGGAGAATTGGGAGGTAA
ACAAAAGGTGAGCGATAGTAGCTACACCCATAATAAGGCTGTATCATCAGATAAATTTTT
TTGGATTGGAAAAATATCATAAATTAATCCCTATTCTAAAAAGAAAGAAAGAGAAAGGCT
GCAGTTTCACTGAGTTCTCTGACTTGTTCAGAGGTAGCAGCTTTTGACATTTATCACTTG
AAATTTAATAGTTCTTTGGATTAATGACTTTTTTAGAAGTAAGGTTGGTATTTACATGGT
ATCTACATGCTCCAGAATAGGTTAACAGTGATTATATAAATCATTTGATCCTGACACATC
TTGGCACTTTTTGTTTCTTGTATCGGGTGGATAATGTTAACATTATTCCTCAGAAATGTA
TGATCATGGGAGATAGTTTTTAGGCTAATTACAGGCGTCCTTATCACTACTCTTCACTTT
TTCCCTGGCAATGATAGATATTGTTAGGGAAAAATTTCTCTGTTGAGTTATACACCTGAG
AAGAAGAATTAACTTGGAAGGAAGTAACTAGAGATAGTAGTACCTGTGTAATATCAATGC
CAAATCTTCTACTTTAGAATGTTAATTTTTTTACTTTGGCTTTTGATGCCATCATGTGAT
TTTTAGTGTGCAGTTATGAAAGGTCATGCATTTCCTATTAGGGGAGAGGTATATTTTTTT
GCAGCTTAAATATTAACTGTGACTACAGTATGTACCAAATTTAAAAGCTATACACTGCCC
CTTTCAGTCTTTTCGTTTTGAACTTTACAATTGAAAGACTTTTTAGAAAAAAGGAATTCC
TGAGGTGTAATTTTTTTATGTATGAATAAAGTTGCATCTATATCTGAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               139-1068, gnl|bosTau2|chr12 (5984622-5983665)
               

               
               139-1068, gnl|Hg17|chr13 (44504178-44505746)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               139-1068, gnl|bosTau2|chr12 (5984622-5983665)
               

               
               139-1068, gnl|Hg17|chr13 (44504178-44505746)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               ton (0.1755)
               

               
               fco (0.157208)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)
               

               
               fco (0.157208)
               

               
               ebs (0.118301)

	139-1068, gnl\|bosTau2\|chr12 (5984622-5983665)
	139-1068, gnl\|Hg17\|chr13 (44504178-44505746)