Ss1.1-Pig4-TMW8068G19.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTGGGGTATCAGCTTGATTTATTGAGGTGAAACAGCCCCAAGGACAACTAAGGT AAAGCCGCCCTCATGACCGGAGGCAGCACGGACCCTCCCGCGAGCCCCGGCCTCAGCGCC CTGCTTTGGGGTCTTCCGTCCGCGGGTCCAGCAGCTCCCACGTGGACACGTCGCTCCTGT CCTTGATCCTGACGCCGTGCGCGCTCAGGTCCCTGCGCAGGGCGTCGCAGGCCTCCAGCA GGGCCCGTCGCTCCAGCAGCTGCCGTCGCCGCGCCTCCCCAGCGGCCTCTCCCGCGGCCA GCGCGAAGCGGCGGACCGTCTGCCGGAAGCGCACCAGCTCCTCCACCACGCTGTGCAGGG CGGCCGGGCTGCCGGCCCCCGCGGCTCGCTGTCGCTCGGCCAGAGAAATCCCCACCGTCT CGAAGAACTGCTCCACGAAGGACACGAGGGCGCCAAGCACGGCGGGGCTCCTGGGGCCTC GGGGCTCCTCCGCGGCCGCCTTCAGCTCTCTGTTCCCGTGATGGATGAGCTCCACGACGG CGTCCACCGCCCGGGGCGTGTTGAAGTCATCTGCCAGGGCCGCCTGCACGGCCCCCTTGG TGCGGCCCAGCCTGTCCCACAGCACGTCCTCCCGCACGGGGCCACCAGCCAGCTGTCCCC TCATGTAGGCCCGAGCGTCCTCCACGAAGGCGGCCACGGCGTGGAGCAGGCGCCTGGCCT CGAGGATGGCGCCGTCACTGTAGTCAACGGCTGACCTGTAGCTGCTCCGCAGGCAGAAGA GCCGGAAGACGTCGGGGGAGGCTGAGCGGAGGAAGTCCTTGATGGTGACGTAATTCCTGA GCGACTTGGACATCTTCTCCTCCCCGCCCTCCACGTGCAGATGCCCCGAATGCAGGAAGT AGTTCCCCCACTGTGGGCACCGGTGGAAGGCCTCACACTGGGCGATTTCGTTCTCGTGGT GCGGAAAAGCCAGGTCTATGCCGCCCGAGTGGATATCCAGCCGACTCCCAAACACCAAGC TGGAGAGGGTGGAGCATTCAATATGCCAGCCAGGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTGGGGTATCAGCTTGATTTATTGAGGTGAAACAGCCCCAAGGACAACTAAGGT AAAGCCGCCCTCATGACCGGAGGCAGCACGGACCCTCCCGCGAGCCCCGGCCTCAGCGCC CTGCTTTGGGGTCTTCCGTCCGCGGGTCCAGCAGCTCCCACGTGGACACGTCGCTCCTGT CCTTGATCCTGACGCCGTGCGCGCTCAGGTCCCTGCGCAGGGCGTCGCAGGCCTCCAGCA GGGCCCGTCGCTCCAGCAGCTGCCGTCGCCGCGCCTCCCCAGCGGCCTCTCCCGCGGCCA GCGCGAAGCGGCGGACCGTCTGCCGGAAGCGCACCAGCTCCTCCACCACGCTGTGCAGGG CGGCCGGGCTGCCGGCCCCCGCGGCTCGCTGTCGCTCGGCCAGAGAAATCCCCACCGTCT CGAAGAACTGCTCCACGAAGGACACGAGGGCGCCAAGCACGGCGGGGCTCCTGGGGCCTC GGGGCTCCTCCGCGGCCGCCTTCAGCTCTCTGTTCCCGTGATGGATGAGCTCCACGACGG CGTCCACCGCCCGGGGCGTGTTGAAGTCATCTGCCAGGGCCGCCTGCACGGCCCCCTTGG TGCGGCCCAGCCTGTCCCACAGCACGTCCTCCCGCACGGGGCCACCAGCCAGCTGTCCCC TCATGTAGGCCCGAGCGTCCTCCACGAAGGCGGCCACGGCGTGGAGCAGGCGCCTGGCCT CGAGGATGGCGCCGTCACTGTAGTCAACGGCTGACCTGTAGCTGCTCCGCAGGCAGAAGA GCCGGAAGACGTCGGGGGAGGCTGAGCGGAGGAAGTCCTTGATGGTGACGTAATTCCTGA GCGACTTGGACATCTTCTCCTCCCCGCCCTCCACGTGCAGATGCCCCGAATGCAGGAAGT AGTTCCCCCACTGTGGGCACCGGTGGAAGGCCTCACACTGGGCGATTTCGTTCTCGTGGT GCGGAAAAGCCAGGTCTATGCCGCCCGAGTGGATATCCAGCCGACTCCCAAACACCAAGC TGGAGAGGGTGGAGCATTCAATATGCCAGCCAGGCC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
| 181-379, gnl|bosTau2|chr12 (45863654-45863852) | |
| 181-379, gnl|canFam2|chr22 (61857515-61857748) | |
| 181-379, gnl|dasNov1|scaffold_37240 (1350-1562) | |
| 181-379, gnl|echTel1|scaffold_291074 (40351-40584) | |
| 181-379, gnl|galGal2|chr1 (132167773-132168058) | |
| 181-379, gnl|hg17|chr13 (110092640-110092871) | |
| 181-379, gnl|Hg17|chr13 (110092662-110092860) | |
| 181-379, gnl|loxAfr1|scaffold_16158 (7923-7689) | |
| 181-379, gnl|mm7|chr8 (11482483-11482712) | |
| 181-379, gnl|Mm7|chr8 (11482503-11482701) | |
| 181-379, gnl|panTro1|chr14 (93534194-93534425) | |
| 181-379, gnl|rheMac2|chr17 (90701912-90702143) | |
| 181-379, gnl|rn3|chr16 (82825113-82824882) | |
| 389-500, gnl|bosTau2|chr12 (45864505-45864617) | |
| 389-500, gnl|canFam2|chr22 (61859353-61859502) | |
| 389-500, gnl|dasNov1|scaffold_37240 (5645-5796) | |
| 389-500, gnl|echTel1|scaffold_291074 (42931-43083) | |
| 389-500, gnl|hg17|chr13 (110094716-110094868) | |
| 389-500, gnl|Hg17|chr13 (110094733-110094848) | |
| 389-500, gnl|loxAfr1|scaffold_16158 (3519-3387) | |
| 389-500, gnl|mm7|chr8 (11484145-11484270) | |
| 389-500, gnl|Mm7|chr8 (11484162-11484270) | |
| 389-500, gnl|panTro1|chr14 (93536264-93536416) | |
| 389-500, gnl|rheMac2|chr17 (90704315-90704467) | |
| 389-500, gnl|rn3|chr16 (82823578-82823453) | |
| 389-500, gnl|xenTro1|scaffold_998 (33908-34039) | |
| 594-753, gnl|bosTau2|chr12 (45865854-45866013) | |
| 594-753, gnl|Hg17|chr13 (110097418-110097590) | |
| 594-753, gnl|Mm7|chr8 (11486412-11486558) | |
| 885-1022, gnl|bosTau2|chr12 (45869798-45869935) | |
| 885-1022, gnl|canFam2|chr22 (61872912-61873078) | |
| 885-1022, gnl|danRer3|chr1 (33370971-33371122) | |
| 885-1022, gnl|dasNov1|scaffold_30487 (529-362) | |
| 885-1022, gnl|echTel1|scaffold_110206 (526-357) | |
| 885-1022, gnl|fr1|chrUn (248269970-248269812) | |
| 885-1022, gnl|galGal2|chr1 (132185224-132185379) | |
| 885-1022, gnl|hg17|chr13 (110117673-110117841) | |
| 885-1022, gnl|Hg17|chr13 (110117687-110117824) | |
| 885-1022, gnl|loxAfr1|scaffold_88419 (8650-8818) | |
| 885-1022, gnl|mm7|chr8 (11497577-11497743) | |
| 885-1022, gnl|Mm7|chr8 (11497590-11497727) | |
| 885-1022, gnl|monDom2|scaffold_11 (36339878-36339705) | |
| 885-1022, gnl|oryCun1|scaffold_168477 (1517-1683) | |
| 885-1022, gnl|panTro1|chr14 (93559685-93559853) | |
| 885-1022, gnl|rheMac2|chr17 (90723750-90723918) | |
| 885-1022, gnl|rn3|chr16 (82809470-82809304) | |
| 885-1022, gnl|tetNig1|chr3 (7341704-7341544) | |
| 885-1022, gnl|xenTro1|scaffold_998 (43256-43426) |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 181-379, gnl|bosTau2|chr12 (45863654-45863852) | |
| 181-379, gnl|canFam2|chr22 (61857515-61857748) | |
| 181-379, gnl|dasNov1|scaffold_37240 (1350-1562) | |
| 181-379, gnl|echTel1|scaffold_291074 (40351-40584) | |
| 181-379, gnl|galGal2|chr1 (132167773-132168058) | |
| 181-379, gnl|hg17|chr13 (110092640-110092871) | |
| 181-379, gnl|Hg17|chr13 (110092662-110092860) | |
| 181-379, gnl|loxAfr1|scaffold_16158 (7923-7689) | |
| 181-379, gnl|mm7|chr8 (11482483-11482712) | |
| 181-379, gnl|Mm7|chr8 (11482503-11482701) | |
| 181-379, gnl|panTro1|chr14 (93534194-93534425) | |
| 181-379, gnl|rheMac2|chr17 (90701912-90702143) | |
| 181-379, gnl|rn3|chr16 (82825113-82824882) | |
| 389-500, gnl|bosTau2|chr12 (45864505-45864617) | |
| 389-500, gnl|canFam2|chr22 (61859353-61859502) | |
| 389-500, gnl|dasNov1|scaffold_37240 (5645-5796) | |
| 389-500, gnl|echTel1|scaffold_291074 (42931-43083) | |
| 389-500, gnl|hg17|chr13 (110094716-110094868) | |
| 389-500, gnl|Hg17|chr13 (110094733-110094848) | |
| 389-500, gnl|loxAfr1|scaffold_16158 (3519-3387) | |
| 389-500, gnl|mm7|chr8 (11484145-11484270) | |
| 389-500, gnl|Mm7|chr8 (11484162-11484270) | |
| 389-500, gnl|panTro1|chr14 (93536264-93536416) | |
| 389-500, gnl|rheMac2|chr17 (90704315-90704467) | |
| 389-500, gnl|rn3|chr16 (82823578-82823453) | |
| 389-500, gnl|xenTro1|scaffold_998 (33908-34039) | |
| 594-753, gnl|bosTau2|chr12 (45865854-45866013) | |
| 594-753, gnl|Hg17|chr13 (110097418-110097590) | |
| 594-753, gnl|Mm7|chr8 (11486412-11486558) | |
| 885-1022, gnl|bosTau2|chr12 (45869798-45869935) | |
| 885-1022, gnl|canFam2|chr22 (61872912-61873078) | |
| 885-1022, gnl|danRer3|chr1 (33370971-33371122) | |
| 885-1022, gnl|dasNov1|scaffold_30487 (529-362) | |
| 885-1022, gnl|echTel1|scaffold_110206 (526-357) | |
| 885-1022, gnl|fr1|chrUn (248269970-248269812) | |
| 885-1022, gnl|galGal2|chr1 (132185224-132185379) | |
| 885-1022, gnl|hg17|chr13 (110117673-110117841) | |
| 885-1022, gnl|Hg17|chr13 (110117687-110117824) | |
| 885-1022, gnl|loxAfr1|scaffold_88419 (8650-8818) | |
| 885-1022, gnl|mm7|chr8 (11497577-11497743) | |
| 885-1022, gnl|Mm7|chr8 (11497590-11497727) | |
| 885-1022, gnl|monDom2|scaffold_11 (36339878-36339705) | |
| 885-1022, gnl|oryCun1|scaffold_168477 (1517-1683) | |
| 885-1022, gnl|panTro1|chr14 (93559685-93559853) | |
| 885-1022, gnl|rheMac2|chr17 (90723750-90723918) | |
| 885-1022, gnl|rn3|chr16 (82809470-82809304) | |
| 885-1022, gnl|tetNig1|chr3 (7341704-7341544) | |
| 885-1022, gnl|xenTro1|scaffold_998 (43256-43426) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| pla (0.401016) | |
| fty (0.17584) | |
| eep (0.122564) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.401016) | |
| fty (0.17584) | |
| eep (0.122564) | |
| nbm (0.0993246) | |
| eje (0.0988338) |