Ss1.1-Pig4-TMW8068G23.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGACCCCAGCCATTGGCTTTTTTATTGAGCACCAGATTTTCAGCACAAGTCACCAGGGGA GGTTATTCTGATTCAGCCAGACTCAGGCCCAGGCCCTGATCCCAGCCCGGGCCCATAATC ACAGGAGAGACGCAGCCGTGCTGAGGTATCCGTGTGTACAGAGACAGGCACTCAGGCGTC ACAGCATCAGTAGCCACCTCTGGAAATCCTAGTCTCCCGGGAAGGAGTAAAGGTAAGCTT ATCGCTCCACCCCAGAGTTGTGAAGACTCGGAGAGGTGGCCACAAAGTCTTCAGGGACGG TGCTCTGCAGAGGACGTGGGCGGCATCCCGTAGGCTTTATAGAGCAGGTCAAGGAGCTCC GTCTTCTCATCATCTGGGAGGAAGCTGGACTTTGCCGCATTGATGTTCAGTCTCTTAAAC TCCTCTTCGGTAAAGCCCATGTCTCGTTTGGTCATCTGGTAATCAGTGTCCAGGGTGGAC TTGAAGATGAGCGGGTCGTCCGTGTTGAGCGAGTAGTTGGCCTGGTCGTTTTTGAACCGG ATGACCGCGTGCTCCGTGCCCGGCTTCCAGGCGCCAGTGAGGTAGCTGGACCAAGGGCAG ACCTCGAAGTGCATGTTCGCTTGCCGCAGCCTGGTGTAAAGGGCCTCGTCCTCCAGCGTG TGGTAGCCGTGCCCCAGCCTCTCCGTCTTGAGAGTGTCCACGGCCTCCTTCACCACCTCC GCTGAGCCCACCTCCCCGGCGTGGACCGTGCGGTGAACACCACTTTTTACAGCCTCCTCG TAGGCCTGCACGTGTCCTGGAAAGAGGCTGCTGCCTTCGATGGTCTCATCTCCAGCCAGG TCAATGGCCACCACGGTCTGCTGCCGGTACTTCTTACACAGCTCCACCACCTCGGGGGAC CAAGTGGGCTGGTGGCGCATGCAGCATAGGATGGACCGCACCTTCACCCCGAAGTCCCGT TCTCCCTCCTGCAGGCCCTGGCCCACCAGATCCACCACCTCATCGGGGGTCAGGTCCCCT TCAGCCTGGTTCCAGGGGATCGGCTCCACTTTGGAGTTGGCCAGCAGGTGCGGGCTGTAG CGCACCTCCACGTACACCACGCCCTCCTTGGCTTTCATCTCCACAAACTCGTAGGCAATC CTTTTGACGGCCTCTCGGGAGCCCGCGATGGCGGGCATGTAGTAGTCGAACTTGGCCAGG AAGGCCGGGAGGCTGAGCGGCTTGTCCATGCCGATGACGTCCTGCAGCTCCTCCGGTGTG TTGGCAGGGAGGGCAATGCCCCTCTTCCTGCCATAATATAAGATGGTTTCGGGCTTGATG GCTCCATCCAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGACCCCAGCCATTGGCTTTTTTATTGAGCACCAGATTTTCAGCACAAGTCACCAGGGGA GGTTATTCTGATTCAGCCAGACTCAGGCCCAGGCCCTGATCCCAGCCCGGGCCCATAATC ACAGGAGAGACGCAGCCGTGCTGAGGTATCCGTGTGTACAGAGACAGGCACTCAGGCGTC ACAGCATCAGTAGCCACCTCTGGAAATCCTAGTCTCCCGGGAAGGAGTAAAGGTAAGCTT ATCGCTCCACCCCAGAGTTGTGAAGACTCGGAGAGGTGGCCACAAAGTCTTCAGGGACGG TGCTCTGCAGAGGACGTGGGCGGCATCCCGTAGGCTTTATAGAGCAGGTCAAGGAGCTCC GTCTTCTCATCATCTGGGAGGAAGCTGGACTTTGCCGCATTGATGTTCAGTCTCTTAAAC TCCTCTTCGGTAAAGCCCATGTCTCGTTTGGTCATCTGGTAATCAGTGTCCAGGGTGGAC TTGAAGATGAGCGGGTCGTCCGTGTTGAGCGAGTAGTTGGCCTGGTCGTTTTTGAACCGG ATGACCGCGTGCTCCGTGCCCGGCTTCCAGGCGCCAGTGAGGTAGCTGGACCAAGGGCAG ACCTCGAAGTGCATGTTCGCTTGCCGCAGCCTGGTGTAAAGGGCCTCGTCCTCCAGCGTG TGGTAGCCGTGCCCCAGCCTCTCCGTCTTGAGAGTGTCCACGGCCTCCTTCACCACCTCC GCTGAGCCCACCTCCCCGGCGTGGACCGTGCGGTGAACACCACTTTTTACAGCCTCCTCG TAGGCCTGCACGTGTCCTGGAAAGAGGCTGCTGCCTTCGATGGTCTCATCTCCAGCCAGG TCAATGGCCACCACGGTCTGCTGCCGGTACTTCTTACACAGCTCCACCACCTCGGGGGAC CAAGTGGGCTGGTGGCGCATGCAGCATAGGATGGACCGCACCTTCACCCCGAAGTCCCGT TCTCCCTCCTGCAGGCCCTGGCCCACCAGATCCACCACCTCATCGGGGGTCAGGTCCCCT TCAGCCTGGTTCCAGGGGATCGGCTCCACTTTGGAGTTGGCCAGCAGGTGCGGGCTGTAG CGCACCTCCACGTACACCACGCCCTCCTTGGCTTTCATCTCCACAAACTCGTAGGCAATC CTTTTGACGGCCTCTCGGGAGCCCGCGATGGCGGGCATGTAGTAGTCGAACTTGGCCAGG AAGGCCGGGAGGCTGAGCGGCTTGTCCATGCCGATGACGTCCTGCAGCTCCTCCGGTGTG TTGGCAGGGAGGGCAATGCCCCTCTTCCTGCCATAATATAAGATGGTTTCGGGCTTGATG GCTCCATCCAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 400-1123, + strand, RNAz p=0.585504 | |
| 773-891, - strand, RNAz p=0.619683 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 400-1123, + strand, RNAz p=0.585504 | |
| 773-891, - strand, RNAz p=0.619683 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 1-269, gnl|bosTau2|chr13 (53900159-53899894) | |
| 1-269, gnl|canFam2|chr24 (35055906-35056189) | |
| 1-269, gnl|dasNov1|scaffold_5312 (26911-26607) | |
| 1-269, gnl|hg17|chr20 (42681579-42681885) | |
| 1-269, gnl|Hg17|chr20 (42681581-42681857) | |
| 1-269, gnl|loxAfr1|scaffold_13403 (35432-35752) | |
| 1-269, gnl|mm7|chr2 (163467699-163467921) | |
| 1-269, gnl|oryCun1|scaffold_87864 (3283-3009) | |
| 1-269, gnl|panTro1|chr21 (45163942-45164248) | |
| 1-269, gnl|rheMac2|chr10 (19822586-19822280) | |
| 1-269, gnl|rn3|chr3 (154542562-154542792) | |
| 360-538, gnl|bosTau2|chr13 (53898754-53898575) | |
| 773-902, gnl|bosTau2|chr13 (53895673-53895544) | |
| 773-902, gnl|Hg17|chr20 (42686253-42686382) | |
| 773-902, gnl|Mm7|chr2 (163471991-163472120) | |
| 1005-1164, gnl|bosTau2|chr13 (53893518-53893362) | |
| 1005-1164, gnl|canFam2|chr24 (35062043-35062229) | |
| 1005-1164, gnl|danRer3|chr23 (38643616-38643793) | |
| 1005-1164, gnl|echTel1|scaffold_257812 (12826-12638) | |
| 1005-1164, gnl|fr1|chrUn (209419804-209419991) | |
| 1005-1164, gnl|galGal2|chr20 (5093743-5093568) | |
| 1005-1164, gnl|hg17|chr20 (42688495-42688685) | |
| 1005-1164, gnl|Hg17|chr20 (42688495-42688654) | |
| 1005-1164, gnl|mm7|chr2 (163473728-163473919) | |
| 1005-1164, gnl|Mm7|chr2 (163473731-163473887) | |
| 1005-1164, gnl|monDom2|scaffold_1 (157174615-157174418) | |
| 1005-1164, gnl|oryCun1|scaffold_132230 (3380-3571) | |
| 1005-1164, gnl|panTro1|chr21 (45170948-45171138) | |
| 1005-1164, gnl|rheMac2|chr10 (19815533-19815343) | |
| 1005-1164, gnl|rn3|chr3 (154548683-154548874) | |
| 1005-1164, gnl|tetNig1|chr9 (10095299-10095115) | |
| 1005-1164, gnl|xenTro1|scaffold_184 (1037025-1037215) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-269, gnl|bosTau2|chr13 (53900159-53899894) | |
| 1-269, gnl|canFam2|chr24 (35055906-35056189) | |
| 1-269, gnl|dasNov1|scaffold_5312 (26911-26607) | |
| 1-269, gnl|hg17|chr20 (42681579-42681885) | |
| 1-269, gnl|Hg17|chr20 (42681581-42681857) | |
| 1-269, gnl|loxAfr1|scaffold_13403 (35432-35752) | |
| 1-269, gnl|mm7|chr2 (163467699-163467921) | |
| 1-269, gnl|oryCun1|scaffold_87864 (3283-3009) | |
| 1-269, gnl|panTro1|chr21 (45163942-45164248) | |
| 1-269, gnl|rheMac2|chr10 (19822586-19822280) | |
| 1-269, gnl|rn3|chr3 (154542562-154542792) | |
| 360-538, gnl|bosTau2|chr13 (53898754-53898575) | |
| 773-902, gnl|bosTau2|chr13 (53895673-53895544) | |
| 773-902, gnl|Hg17|chr20 (42686253-42686382) | |
| 773-902, gnl|Mm7|chr2 (163471991-163472120) | |
| 1005-1164, gnl|bosTau2|chr13 (53893518-53893362) | |
| 1005-1164, gnl|canFam2|chr24 (35062043-35062229) | |
| 1005-1164, gnl|danRer3|chr23 (38643616-38643793) | |
| 1005-1164, gnl|echTel1|scaffold_257812 (12826-12638) | |
| 1005-1164, gnl|fr1|chrUn (209419804-209419991) | |
| 1005-1164, gnl|galGal2|chr20 (5093743-5093568) | |
| 1005-1164, gnl|hg17|chr20 (42688495-42688685) | |
| 1005-1164, gnl|Hg17|chr20 (42688495-42688654) | |
| 1005-1164, gnl|mm7|chr2 (163473728-163473919) | |
| 1005-1164, gnl|Mm7|chr2 (163473731-163473887) | |
| 1005-1164, gnl|monDom2|scaffold_1 (157174615-157174418) | |
| 1005-1164, gnl|oryCun1|scaffold_132230 (3380-3571) | |
| 1005-1164, gnl|panTro1|chr21 (45170948-45171138) | |
| 1005-1164, gnl|rheMac2|chr10 (19815533-19815343) | |
| 1005-1164, gnl|rn3|chr3 (154548683-154548874) | |
| 1005-1164, gnl|tetNig1|chr9 (10095299-10095115) | |
| 1005-1164, gnl|xenTro1|scaffold_184 (1037025-1037215) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| duo (2.07361) | |
| ton (1.053) | |
| elu (0.385356) | |
| mas (0.210305) | |
| fty (0.17584) | |
| ill (0.175593) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| eep (0.122564) | |
| med (0.116252) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| duo (2.07361) | |
| ton (1.053) | |
| elu (0.385356) | |
| mas (0.210305) | |
| fty (0.17584) | |
| ill (0.175593) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| eep (0.122564) | |
| med (0.116252) |